def process(self, text, scan, *args, **kws):
# Some folks use more than two spaces! Use regular expression(re) module
scan.L = re.split(" +", strip_first_word(text))
if len(scan.L) == 1 and hasattr(scan, 'N') and scan.N[0] > 1:
# BUT: some folks only use a single-space as a separator!
# perhaps #L was written with single-space separators.?
# Unusual for scan to have only 1 column, but possible
labels = strip_first_word(text).split()
if len(labels) == scan.N[0]:
scan.L = labels
scan.column_first = scan.L[0]
scan.column_last = scan.L[-1]
def process(self, text, scan, *args, **kws):
# Some folks use more than two spaces! Use regular expression(re) module
scan.L = re.split(" +", strip_first_word(text))
if len(scan.L) == 1 and hasattr(scan, 'N') and scan.N[0] > 1:
# BUT: some folks only use a single-space as a separator!
# perhaps #L was written with single-space separators.?
# Unusual for scan to have only 1 column, but possible
labels = strip_first_word(text).split()
if len(labels) == scan.N[0]:
scan.L = labels
scan.column_first = scan.L[0]
scan.column_last = scan.L[-1]
def process(self, text, scan, *args, **kws):
scan.comments.append(strip_first_word(text))
pos = text.find('Scan aborted after ')
if pos > 0:
scan._aborted_ = text[pos:]
if isinstance(scan, SpecDataFileScan):
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
scan.comments.append( strip_first_word(text) )
pos = text.find('Scan aborted after ')
if pos > 0:
scan._aborted_ = text[pos:]
if isinstance(scan, SpecDataFileScan):
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
text = strip_first_word(text)
pos = text.find(" ")
scan.T = text[:pos]
scan.time_name = text[pos:].strip().lstrip('(').rstrip(')')
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
if not hasattr(scan, 'UXML'):
scan.UXML = []
line = strip_first_word(text)
scan.UXML.append(line)
scan.addPostProcessor('UXML_metadata', self.postprocess)
def process(self, text, scan, *args, **kws):
if not hasattr(scan, "UXML"):
scan.UXML = []
line = strip_first_word(text)
scan.UXML.append(line)
scan.addPostProcessor("UXML_metadata", self.postprocess)
def process(self, text, spec_obj, *args, **kws):
args = strip_first_word(text).split()
mne = args[0]
pv = args[1]
if not hasattr(spec_obj, "EPICS_PV"):
# use OrderedDict since it remembers the order we found these
spec_obj.EPICS_PV = OrderedDict()
spec_obj.EPICS_PV[mne] = pv
def process(self, text, scan, *args, **kws):
s = strip_first_word(text).split()
preset_time, elapsed_live_time, elapsed_real_time = map(float, s)
if not hasattr(scan, 'MCA'):
scan.MCA = {}
scan.MCA['preset_time'] = preset_time
scan.MCA['elapsed_live_time'] = elapsed_live_time
scan.MCA['elapsed_real_time'] = elapsed_real_time
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
s = strip_first_word(text).split()
preset_time, elapsed_live_time, elapsed_real_time = map(float, s)
if not hasattr(scan, 'MCA'):
scan.MCA = {}
scan.MCA['preset_time'] = preset_time
scan.MCA['elapsed_live_time'] = elapsed_live_time
scan.MCA['elapsed_real_time'] = elapsed_real_time
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
s = strip_first_word(text).split()
ROI_name = s[0]
first_chan, last_chan = map(int, s[1:])
if not hasattr(scan, 'MCA'):
scan.MCA = {}
if 'ROI' not in scan.MCA:
scan.MCA['ROI'] = {}
scan.MCA['ROI'][ROI_name] = {}
scan.MCA['ROI'][ROI_name]['first_chan'] = first_chan
scan.MCA['ROI'][ROI_name]['last_chan'] = last_chan
def process(self, text, scan, *args, **kws):
s = strip_first_word(text).split()
ROI_name = s[0]
first_chan, last_chan = map(int, s[1:])
if not hasattr(scan, 'MCA'):
scan.MCA = {}
if 'ROI' not in scan.MCA:
scan.MCA['ROI'] = {}
scan.MCA['ROI'][ROI_name] = {}
scan.MCA['ROI'][ROI_name]['first_chan'] = first_chan
scan.MCA['ROI'][ROI_name]['last_chan'] = last_chan
def process(self, text, scan, *args, **kws):
# #@CHANN 1201 1110 1200 1
s = strip_first_word(text).split()
number_saved, first_saved, last_saved = map(int, s[0:3])
reduction_coef = float(s[-1])
if not hasattr(scan, 'MCA'):
scan.MCA = {}
scan.MCA['number_saved'] = number_saved
scan.MCA['first_saved'] = first_saved
scan.MCA['last_saved'] = last_saved
scan.MCA['reduction_coef'] = reduction_coef
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
# #@CALIB a b c
s = strip_first_word(text).split()
a, b, c = map(float, s)
if not hasattr(scan, 'MCA'):
scan.MCA = {}
if 'CALIB' not in scan.MCA:
scan.MCA['CALIB'] = {}
scan.MCA['CALIB']['a'] = a
scan.MCA['CALIB']['b'] = b
scan.MCA['CALIB']['c'] = c
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
# #@CHANN 1201 1110 1200 1
s = strip_first_word(text).split()
number_saved, first_saved, last_saved = map(int, s[0:3])
reduction_coef = float(s[-1])
if not hasattr(scan, 'MCA'):
scan.MCA = {}
scan.MCA['number_saved'] = number_saved
scan.MCA['first_saved'] = first_saved
scan.MCA['last_saved'] = last_saved
scan.MCA['reduction_coef'] = reduction_coef
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
# #@CALIB a b c
s = strip_first_word(text).split()
a, b, c = map(float, s)
if not hasattr(scan, 'MCA'):
scan.MCA = {}
if 'CALIB' not in scan.MCA:
scan.MCA['CALIB'] = {}
scan.MCA['CALIB']['a'] = a
scan.MCA['CALIB']['b'] = b
scan.MCA['CALIB']['c'] = c
scan.addH5writer(self.key, self.writer)
def process(self, part, spec_obj, *args, **kws):
scan = SpecDataFileScan(spec_obj.headers[-1], part, parent=spec_obj)
text = part.splitlines()[0].strip()
scan.S = strip_first_word(text)
scan.scanNum = scan.S.split()[0]
scan.scanCmd = strip_first_word(scan.S)
if scan.scanNum in spec_obj.scans:
# Before raising an exception,
# Check for duplicate and create alternate name
# write as "%d.%d" % (scan.scanNum, index)
# where index is the lowest integer in
# range(1,really big) that is not already in use.
# really_big < len(total number of scans in data file)
# Will a non-integer scanNum break anything?
for i in range(1, len(scan.parent.scans)):
new_scanNum = "%s.%d" % (scan.scanNum, i)
if new_scanNum not in spec_obj.scans:
scan.scanNum = new_scanNum
break
scan.scanNum = str(scan.scanNum)
if scan.scanNum in spec_obj.scans:
msg = str(scan.scanNum) + ' in ' + spec_obj.fileName
raise DuplicateSpecScanNumber(msg)
spec_obj.scans[scan.scanNum] = scan
def process(self, part, spec_obj, *args, **kws):
scan = SpecDataFileScan(spec_obj.headers[-1], part, parent=spec_obj)
text = part.splitlines()[0].strip()
scan.S = strip_first_word(text)
scan.scanNum = scan.S.split()[0]
scan.scanCmd = strip_first_word(scan.S)
if scan.scanNum in spec_obj.scans:
# Before raising an exception,
# Check for duplicate and create alternate name
# write as "%d.%d" % (scan.scanNum, index)
# where index is the lowest integer in
# range(1,really big) that is not already in use.
# really_big < len(total number of scans in data file)
# Will a non-integer scanNum break anything?
for i in range(1, len(scan.parent.scans)):
new_scanNum = "%s.%d" % (scan.scanNum, i)
if new_scanNum not in spec_obj.scans:
scan.scanNum = new_scanNum
break
scan.scanNum = str(scan.scanNum)
if scan.scanNum in spec_obj.scans:
msg = str(scan.scanNum) + ' in ' + spec_obj.fileName
raise DuplicateSpecScanNumber(msg)
spec_obj.scans[scan.scanNum] = scan
def process(self, text, scan, *args, **kws):
text = strip_first_word(text)
pos = text.rfind(" ")
last_chan = int(text[pos:])
text = text[:pos]
pos = text.rfind(" ")
first_chan = int(text[pos:])
ROI_name = text[:pos].strip()
if not hasattr(scan, 'MCA'):
scan.MCA = {}
if 'ROI' not in scan.MCA:
scan.MCA['ROI'] = {}
scan.MCA['ROI'][ROI_name] = {}
scan.MCA['ROI'][ROI_name]['first_chan'] = first_chan
scan.MCA['ROI'][ROI_name]['last_chan'] = last_chan
def process(self, text, header, *args, **kws):
if not hasattr(header, 'o'):
header.o = []
header.o.append( strip_first_word(text).split() )
header.addPostProcessor('positioner cross-referencing', self.postprocess)
def process(self, text, header, *args, **kws):
header.O.append( strip_first_word(text).split() )
def process(self, text, scan, *args, **kws):
scan.T = strip_first_word(text).split()[0]
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
scan.M, dname = strip_first_word(text).split()
scan.monitor_name = dname.lstrip('(').rstrip(')')
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
s = strip_first_word(text)
if len(s) > 0:
scan.Q = map(float, s.split())
scan.addH5writer(self.key, self.writer)
def process(self, buf, scan, *args, **kws):
header = SpecDataFileHeader(buf, parent=scan)
line = buf.splitlines()[0].strip()
header.epoch = int(strip_first_word(line))
header.interpret() # parse the full header
scan.headers.append(header)
def process(self, text, scan, *args, **kws):
scan.M, dname = strip_first_word(text).split()
scan.monitor_name = dname.lstrip('(').rstrip(')')
scan.addH5writer(self.key, self.writer)
def process(self, text, spec_obj, *args, **kws):
spec_obj.H.append( strip_first_word(text).split() )
def process(self, text, scan, *args, **kws):
scan.date = strip_first_word(text)
if isinstance(scan, SpecDataFileScan):
scan.addH5writer(self.key, self.writer)
def process(self, text, spec_obj, *args, **kws):
s = strip_first_word(text)
if not hasattr(spec_obj, "MyTest"):
# a list allows for more than one #TEST in a scan
spec_obj.MyTest = []
spec_obj.MyTest.append(s)
def process(self, text, spec_file_obj, *args, **kws):
spec_file_obj.specFile = strip_first_word(text)
def process(self, text, scan, *args, **kws):
scan.P.append(strip_first_word(text))
scan.addPostProcessor('motor_positions', self.postprocess)
def process(self, buf, scan, *args, **kws):
header = SpecDataFileHeader(buf, parent=scan)
line = buf.splitlines()[0].strip()
header.epoch = int(strip_first_word(line))
header.interpret() # parse the full header
scan.headers.append(header)
def process(self, text, spec_file_obj, *args, **kws):
spec_file_obj.specFile = strip_first_word(text)
def process(self, text, spec_obj, *args, **kws):
spec_obj.H.append( strip_first_word(text).split() )
def process(self, text, scan, *args, **kws):
scan.P.append( strip_first_word(text) )
scan.addPostProcessor('motor_positions', self.postprocess)
def process(self, text, scan, *args, **kws):
scan.I = float(strip_first_word(text))
def process(self, text, header, *args, **kws):
header.O.append(strip_first_word(text).split())
def process(self, text, scan, *args, **kws):
scan.I = float(strip_first_word(text))
def process(self, text, scan, *args, **kws):
scan.N = map(int, strip_first_word(text).split())
def process(self, text, header, *args, **kws):
if not hasattr(header, 'o'):
header.o = []
header.o.append(strip_first_word(text).split())
header.addPostProcessor('positioner cross-referencing',
self.postprocess)
def process(self, text, scan, *args, **kws):
scan.date = strip_first_word(text)
if isinstance(scan, SpecDataFileScan):
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
scan.N = map(int, strip_first_word(text).split())
def process(self, text, scan, *args, **kws):
scan.T = strip_first_word(text).split()[0]
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
s = strip_first_word(text)
if len(s) > 0:
scan.Q = map(float, s.split())
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
scan.V.append( strip_first_word(text) )
scan.addPostProcessor('unicat_metadata', self.postprocess)
def process(self, text, scan, *args, **kws):
subkey = text.split()[0].lstrip('#')
scan.G[subkey] = strip_first_word(text)
if len(scan.G) > 0:
scan.addH5writer(self.key, self.writer)
def process(self, text, scan, *args, **kws):
scan.V.append( strip_first_word(text) )
scan.addPostProcessor('unicat_metadata', self.postprocess)
def process(self, text, scan, *args, **kws):
subkey = text.split()[0].lstrip('#')
scan.G[subkey] = strip_first_word(text)
if len(scan.G) > 0:
scan.addH5writer(self.key, self.writer)
def test_strip_first_word(self):
self.assertEqual(utils.strip_first_word('one two three'), 'two three')
def test_strip_first_word(self):
self.assertEqual(utils.strip_first_word('one two three'), 'two three')
