def _boolean_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('flag', Boolean))
return ApplyBatchImpl(t, table_args, table_kwargs)
def sqla_metadata(self):
# pylint: disable=no-member
metadata = MetaData(bind=self.get_sqla_engine())
return metadata.reflect()
def _get_meta_data(engine):
"""search db objects like views or tables"""
meta_data = MetaData(engine)
meta_data.reflect(views=True)
return meta_data
"drop_db",
# util
"test_db_connection", "get_contest_list", "is_contest_id",
"ask_for_contest", "get_submissions", "get_submission_results",
"get_datasets_to_judge", "enumerate_files"
]
# Instantiate or import these objects.
version = 39
engine = create_engine(config.database, echo=config.database_debug,
pool_timeout=60, pool_recycle=120)
metadata = MetaData(engine)
from .session import Session, ScopedSession, SessionGen, \
custom_psycopg2_connection
from .types import CastingArray, Codename, Filename, FilenameSchema, \
FilenameSchemaArray, Digest
from .base import Base
from .fsobject import FSObject, LargeObject
from .contest import Contest, Announcement, Presentation
from .user import User, Team, Participation, Message, Question
from .admin import Admin
from .task import Task, Statement, Attachment, Dataset, Manager, Testcase, \
TaskName, TaskTitle
from .submission import Submission, File, Token, SubmissionResult, \
Executable, Evaluation
Table, Numeric)
from sqlalchemy.dialects.postgresql import ARRAY
from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm import relationship
import sqlahelper as sah
from geoalchemy2 import types as geotypes
# import WAM_APP_FRED.app_settings
# from geoalchemy2.types import Geometry
# from WAM_APP_FRED.cli.openFRED import mapped_classes, db_session
# ##########################################SQLAlchemy setup########################################
SCHEMA_1 = 'climate'
SCHEMA_2 = 'supply'
engine = sah.get_engine('oep_engine')
metadata_1 = MetaData(schema=SCHEMA_1, bind=engine)
metadata_2 = MetaData(schema=SCHEMA_2, bind=engine)
# ##########################################TABLE DEFINITION########################################
# included function from github: https://github.com/open-fred/cli/blob/master/openFRED.py
# copied function to avoid dependencies
def mapped_classes(metadata):
""" Returns classes mapped to the openFRED database via SQLAlchemy.
The classes are dynamically created and stored in a dictionary keyed by
class names. The dictionary also contains the special entry `__Base__`,
which an SQLAlchemy `declarative_base` instance used as the base class from
which all mapped classes inherit.
"""
def test_nolength_string(self):
metadata = MetaData()
foo = Table('foo', metadata, Column('one', String))
foo.create(config.db)
foo.drop(config.db)
# define metadata for table
from sqlalchemy import MetaData
from sqlalchemy import Table, Column
from sqlalchemy import Integer, String
metadata = MetaData(
) # metadata is collection of tables and can be traversed like XML DOM
user_table = Table("user", metadata, Column("id", Integer, primary_key=True),
Column("name", String))
# init engine over database
from sqlalchemy import create_engine
engine = create_engine("sqlite://", echo=True)
# create table from metadata
metadata.create_all(engine)
# now load metadata for the table from database
metadata2 = MetaData()
user_table_reflected = Table("user",
metadata2,
autoload=True,
autoload_with=engine)
print("-- TABLE SCHEMA LOADED FROM DB ---------------------")
print(repr(user_table_reflected))
def _fk_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('email', String()),
Column('user_id', Integer, ForeignKey('user.id')))
return ApplyBatchImpl(t, table_args, table_kwargs)
pool_timeout=1200,
pool_reset_on_return='commit')
return eng
engine = get_engine()
Base = declarative_base()
Session = sessionmaker(bind=engine)
db_session = Session()
session_factory = sessionmaker(bind=engine)
ScopedSession = scoped_session(session_factory)
db_scoped_session = ScopedSession()
metadata = MetaData(get_engine())
db_lock = threading.RLock()
__all__ = [
'engine', 'Base', 'db_session', 'metadata', 'db_lock', 'db_scoped_session',
'ScopedSession'
]
# ss = ScopedSession()
# ss2 = ScopedSession()
# if ss is ss2:
# print(1)
# ScopedSession.remove()
#
# if ss is ss2:
# print(1)
def _ix_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('x', String()), Column('y', Integer),
Index('ix1', 'y'))
return ApplyBatchImpl(t, table_args, table_kwargs)
def _sql_ck_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('email', String()))
t.append_constraint(CheckConstraint(t.c.email.like('%@%')))
return ApplyBatchImpl(t, table_args, table_kwargs)
def _uq_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('x', String()), Column('y', Integer),
UniqueConstraint('y', name='uq1'))
return ApplyBatchImpl(t, table_args, table_kwargs)
def _enum_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('thing', Enum('a', 'b', 'c')))
return ApplyBatchImpl(t, table_args, table_kwargs)
def _boolean_no_ck_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('flag', Boolean(create_constraint=False)))
return ApplyBatchImpl(t, table_args, table_kwargs)
def test_basic(self, metadata, connection):
s_table = Table(
"sometable",
metadata,
Column("id_a", Unicode(255), primary_key=True),
Column("id_b", Unicode(255), primary_key=True, unique=True),
Column("group", Unicode(255), primary_key=True),
Column("col", Unicode(255)),
UniqueConstraint("col", "group"),
)
# "group" is a keyword, so lower case
normalind = Index("tableind", s_table.c.id_b, s_table.c.group)
Index(
"compress1", s_table.c.id_a, s_table.c.id_b, oracle_compress=True
)
Index(
"compress2",
s_table.c.id_a,
s_table.c.id_b,
s_table.c.col,
oracle_compress=1,
)
metadata.create_all(connection)
mirror = MetaData()
mirror.reflect(connection)
metadata.drop_all(connection)
mirror.create_all(connection)
inspect = MetaData()
inspect.reflect(connection)
def obj_definition(obj):
return (
obj.__class__,
tuple([c.name for c in obj.columns]),
getattr(obj, "unique", None),
)
# find what the primary k constraint name should be
primaryconsname = connection.scalar(
text(
"""SELECT constraint_name
FROM all_constraints
WHERE table_name = :table_name
AND owner = :owner
AND constraint_type = 'P' """
),
dict(
table_name=s_table.name.upper(),
owner=testing.db.dialect.default_schema_name.upper(),
),
)
reflectedtable = inspect.tables[s_table.name]
# make a dictionary of the reflected objects:
reflected = dict(
[
(obj_definition(i), i)
for i in reflectedtable.indexes | reflectedtable.constraints
]
)
# assert we got primary key constraint and its name, Error
# if not in dict
assert (
reflected[
(PrimaryKeyConstraint, ("id_a", "id_b", "group"), None)
].name.upper()
== primaryconsname.upper()
)
# Error if not in dict
eq_(reflected[(Index, ("id_b", "group"), False)].name, normalind.name)
assert (Index, ("id_b",), True) in reflected
assert (Index, ("col", "group"), True) in reflected
idx = reflected[(Index, ("id_a", "id_b"), False)]
assert idx.dialect_options["oracle"]["compress"] == 2
idx = reflected[(Index, ("id_a", "id_b", "col"), False)]
assert idx.dialect_options["oracle"]["compress"] == 1
eq_(len(reflectedtable.constraints), 1)
eq_(len(reflectedtable.indexes), 5)
def create_tables(engine=user_engine):
meta = MetaData()
meta.create_all(bind=engine, tables=tables)
print('- 创建表成功: ')
for table in tables:
print('- %s' % table)
def upgrade(migrate_engine):
meta = MetaData()
meta.bind = migrate_engine
table = define_hosts_table(meta)
table.create()
def drop_tables(engine=user_engine):
meta = MetaData()
meta.drop_all(bind=engine, tables=tables)
print('- 删除表成功:')
print(tables)
from sqlalchemy import (create_engine, MetaData, Column, Table, Integer,
String, DateTime)
from datetime import datetime
engine = create_engine('sqlite:///teste.db', echo=True)
metadata = MetaData(bind=engine)
user_table = Table(
'usuarios', metadata, Column('id', Integer, primary_key=True),
Column('nome', String(40), index=True),
Column('idade', Integer, nullable=False), Column('senha', String),
Column('Criado_em', DateTime, default=datetime.now),
Column('atualizado_em',
DateTime,
default=datetime.now,
onupdate=datetime.now))
metadata.create_all(engine)
def upgrade():
connection = op.get_bind()
meta = MetaData()
meta.reflect(bind=connection)
commit_table = meta.tables["commit"]
distribution_table = meta.tables["distribution"]
machine_table = meta.tables["machine"]
run_table = meta.tables["run"]
summary_table = meta.tables["summary"]
runs = connection.execute(run_table.select())
commits = connection.execute(commit_table.select())
distributions = connection.execute(distribution_table.select())
machines = connection.execute(machine_table.select())
runs_by_id = {r["id"]: r for r in runs}
commits_by_id = {c["id"]: c for c in commits}
machines_by_id = {m["id"]: m for m in machines}
logging.info("1fed559406c5: Get benchmarks")
summaries = connection.execute(
summary_table.select()
.join(run_table, run_table.c.id == summary_table.c.run_id)
.filter(run_table.c.name.like("commit: %"))
)
i = 1
logging.info("1fed559406c5: Truncate distribution table")
connection.execute(distribution_table.delete())
assert list(connection.execute(distribution_table.select())) == []
for summary in summaries:
run = runs_by_id.get(summary["run_id"])
if not run:
continue
commit = commits_by_id.get(run["commit_id"])
if not commit:
continue
if commit.timestamp is None:
continue
m = machines_by_id[run["machine_id"]]
machine_hash = f"{m.name}-{m.gpu_count}-{m.cpu_core_count}-{m.cpu_thread_count}-{m.memory_bytes}"
distributions = list(
connection.execute(
get_distribution(
summary_table,
run_table,
machine_table,
commit_table,
commit,
summary,
machine_hash,
100,
)
)
)
if not distributions:
continue
distribution = distributions[0]
values = dict(distribution)
machine_hash = values.pop("hash")
values["id"] = uuid.uuid4().hex
values["machine_hash"] = machine_hash
values["limit"] = 100
connection.execute(
insert(distribution_table)
.values(values)
.on_conflict_do_update(
index_elements=["case_id", "context_id", "commit_id", "machine_hash"],
set_=values,
)
)
logging.info(f"1fed559406c5: Processed {i} summary")
i += 1
logging.info("1fed559406c5: Done with migration")
CheckConstraint,
Integer,
String,
DateTime,
Boolean,
Date,
Text,
SmallInteger,
DDL,
sql,
)
from sqlalchemy.dialects.postgresql import ARRAY, UUID, INET, JSONB
metadata = MetaData(
naming_convention={
'fk': '%(table_name)s_fk_%(column_0_name)s',
'ix': '%(table_name)s_idx_%(column_0_name)s',
'pk': '%(table_name)s_pkey',
})
import mbdata.config # noqa: E402
mbdata.config.configure(metadata=metadata, schema='musicbrainz')
sqlalchemy.event.listen(
metadata,
'before_create',
DDL('CREATE SCHEMA IF NOT EXISTS musicbrainz'),
)
account = Table(
'account',
metadata,
def get_sqlalchemy_metadata(self):
sa_engine = self.get_engine()
meta = MetaData()
meta.reflect(bind=sa_engine)
return meta
app = Flask(__name__)
#################################################
# Database Setup
#################################################
DATABASE_URL = os.environ['DATABASE_URL']
app.config["SQLALCHEMY_DATABASE_URI"] = DATABASE_URL
app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = False
# for local "postgres://*****:*****@@127.0.0.1/inc5000"
db = SQLAlchemy(app)
metadata = MetaData(bind=db.engine)
# inc2018_data = Table('inc2018_data', metadata, autoload_with=db.engine)
inc2018_data = Table('inc2018_data', metadata, autoload_with=db.engine)
#session = Session(db.engine)
# reflect an existing database into a new model
Base = automap_base()
# reflect the tables
Base.prepare(db.engine, reflect=True)
session = Session(db.engine)
Base.classes.keys()
# Save references to each table
def create_new_spine_database(db_url, upgrade=True, for_spine_model=False):
"""Create a new Spine database at the given url."""
try:
engine = create_engine(db_url)
except DatabaseError as e:
raise SpineDBAPIError("Could not connect to '{}': {}".format(
db_url, e.orig.args))
# Drop existing tables. This is a Spine db now...
meta = MetaData(engine)
meta.reflect()
meta.drop_all(engine)
# Create new tables
meta = MetaData(naming_convention=naming_convention)
Table(
"commit",
meta,
Column("id", Integer, primary_key=True),
Column("comment", String(255), nullable=False),
Column("date", DateTime, nullable=False),
Column("user", String(45)),
)
object_class_category = Table(
"object_class_category",
meta,
Column("id", Integer, primary_key=True),
Column("name", String(255), nullable=False, unique=True),
Column("description", String(255), server_default=null()),
Column("commit_id", Integer, ForeignKey("commit.id")),
)
object_class = Table(
"object_class",
meta,
Column("id", Integer, primary_key=True),
Column("name", String(255), nullable=False, unique=True),
Column("description", String(255), server_default=null()),
Column("category_id",
Integer,
ForeignKey("object_class_category.id"),
server_default=null()),
Column("display_order", Integer, server_default="99"),
Column("display_icon", BigInteger, server_default=null()),
Column("hidden", Integer, server_default="0"),
Column("commit_id", Integer, ForeignKey("commit.id")),
)
Table(
"object_category",
meta,
Column("id", Integer, primary_key=True),
Column("object_class_id", Integer, ForeignKey("object_class.id")),
Column("name", String(255), nullable=False, unique=True),
Column("description", String(255), server_default=null()),
Column("commit_id", Integer, ForeignKey("commit.id")),
)
Table(
"object",
meta,
Column("id", Integer, primary_key=True),
Column(
"class_id", Integer,
ForeignKey("object_class.id",
onupdate="CASCADE",
ondelete="CASCADE")),
Column("name", String(255), nullable=False, unique=True),
Column("description", String(255), server_default=null()),
Column("category_id", Integer, ForeignKey("object_category.id")),
Column("commit_id", Integer, ForeignKey("commit.id")),
)
Table(
"relationship_class",
meta,
Column("id", Integer, primary_key=True),
Column("dimension", Integer, primary_key=True),
Column("object_class_id", Integer, ForeignKey("object_class.id")),
Column("name", String(255), nullable=False),
Column("hidden", Integer, server_default="0"),
Column("commit_id", Integer, ForeignKey("commit.id")),
UniqueConstraint("dimension", "name"),
)
Table(
"relationship",
meta,
Column("id", Integer, primary_key=True),
Column("dimension", Integer, primary_key=True),
Column("object_id", Integer, ForeignKey("object.id")),
Column("class_id", Integer, nullable=False),
Column("name", String(255), nullable=False),
Column("commit_id", Integer, ForeignKey("commit.id")),
UniqueConstraint("dimension", "name"),
ForeignKeyConstraint(
("class_id", "dimension"),
("relationship_class.id", "relationship_class.dimension"),
onupdate="CASCADE",
ondelete="CASCADE",
),
)
Table(
"parameter",
meta,
Column("id", Integer, primary_key=True),
Column("name", String(155), nullable=False, unique=True),
Column("description", String(155), server_default=null()),
Column("data_type", String(155), server_default="NUMERIC"),
Column("relationship_class_id", Integer, default=null()),
Column(
"object_class_id",
Integer,
ForeignKey("object_class.id",
onupdate="CASCADE",
ondelete="CASCADE"),
server_default=null(),
),
Column("can_have_time_series", Integer, server_default="0"),
Column("can_have_time_pattern", Integer, server_default="1"),
Column("can_be_stochastic", Integer, server_default="0"),
Column("default_value", String(155), server_default="0"),
Column("is_mandatory", Integer, server_default="0"),
Column("precision", Integer, server_default="2"),
Column("unit", String(155), server_default=null()),
Column("minimum_value", Float, server_default=null()),
Column("maximum_value", Float, server_default=null()),
Column("commit_id", Integer, ForeignKey("commit.id")),
CheckConstraint(
"`relationship_class_id` IS NOT NULL OR `object_class_id` IS NOT NULL"
),
)
Table(
"parameter_value",
meta,
Column("id", Integer, primary_key=True),
Column(
"parameter_id", Integer,
ForeignKey("parameter.id", onupdate="CASCADE",
ondelete="CASCADE")),
Column("relationship_id", Integer, server_default=null()),
Column("dummy_relationship_dimension", Integer, server_default="0"),
Column("object_id",
Integer,
ForeignKey("object.id", onupdate="CASCADE", ondelete="CASCADE"),
server_default=null()),
Column("index", Integer, server_default="1"),
Column("value", String(155), server_default=null()),
Column("json", String(255), server_default=null()),
Column("expression", String(155), server_default=null()),
Column("time_pattern", String(155), server_default=null()),
Column("time_series_id", String(155), server_default=null()),
Column("stochastic_model_id", String(155), server_default=null()),
Column("commit_id", Integer, ForeignKey("commit.id")),
CheckConstraint(
"`relationship_id` IS NOT NULL OR `object_id` IS NOT NULL"),
UniqueConstraint("parameter_id", "object_id"),
UniqueConstraint("parameter_id", "relationship_id"),
ForeignKeyConstraint(
("relationship_id", "dummy_relationship_dimension"),
("relationship.id", "relationship.dimension"),
onupdate="CASCADE",
ondelete="CASCADE",
),
)
try:
meta.create_all(engine)
except DatabaseError as e:
raise SpineDBAPIError("Unable to create Spine database: {}".format(
e.orig.args))
if not upgrade:
return engine
is_head(db_url, upgrade=True)
if not for_spine_model:
return engine
# Add specific data structure for Spine Model
meta = MetaData(engine, reflect=True)
object_class = meta.tables["object_class"]
object_ = meta.tables["object"]
relationship_class = meta.tables["relationship_class"]
parameter_definition = meta.tables["parameter_definition"]
parameter_tag = meta.tables["parameter_tag"]
parameter_definition_tag = meta.tables["parameter_definition_tag"]
obj_cls = lambda *x: dict(
zip(("id", "name", "description", "display_order", "display_icon"), x))
obj = lambda *x: dict(zip(("class_id", "name", "description"), x))
rel_cls = lambda *x: dict(
zip(("id", "dimension", "object_class_id", "name"), x))
obj_par_def = lambda *x: dict(
zip(("id", "name", "object_class_id", "default_value"), x))
rel_par_def = lambda *x: dict(
zip(("id", "name", "relationship_class_id", "default_value"), x))
par_tag = lambda *x: dict(zip(("id", "tag", "description"), x))
par_def_tag = lambda *x: dict(
zip(("parameter_definition_id", "parameter_tag_id"), x))
try:
engine.execute(
object_class.insert(),
[
obj_cls(1, "direction", "A flow direction", 1, 281105626296654,
0),
obj_cls(
2, "unit",
"An entity where an energy conversion process takes place",
2, 281470681805429, 0),
obj_cls(3, "connection",
"An entity where an energy transfer takes place", 3,
280378317271233, 0),
obj_cls(4, "storage", "A storage", 4, 280376899531934, 0),
obj_cls(5, "commodity", "A commodity", 5, 281473533932880, 0),
obj_cls(6, "node",
"An entity where an energy balance takes place", 6,
280740554077951, 0),
obj_cls(7, "temporal_block", "A temporal block", 7,
280376891207703, 0),
],
)
engine.execute(
object_.insert(),
[
obj(1, "from_node", "From a node, into something else"),
obj(1, "to_node", "Into a node, from something else"),
],
)
engine.execute(
relationship_class.insert(),
[
rel_cls(1, 0, 2, "unit__node__direction__temporal_block"),
rel_cls(1, 1, 6, "unit__node__direction__temporal_block"),
rel_cls(1, 2, 1, "unit__node__direction__temporal_block"),
rel_cls(1, 3, 7, "unit__node__direction__temporal_block"),
rel_cls(2, 0, 3,
"connection__node__direction__temporal_block"),
rel_cls(2, 1, 6,
"connection__node__direction__temporal_block"),
rel_cls(2, 2, 1,
"connection__node__direction__temporal_block"),
rel_cls(2, 3, 7,
"connection__node__direction__temporal_block"),
rel_cls(3, 0, 6, "node__commodity"),
rel_cls(3, 1, 5, "node__commodity"),
rel_cls(4, 0, 2, "unit_group__unit"),
rel_cls(4, 1, 2, "unit_group__unit"),
rel_cls(5, 0, 5, "commodity_group__commodity"),
rel_cls(5, 1, 5, "commodity_group__commodity"),
rel_cls(6, 0, 6, "node_group__node"),
rel_cls(6, 1, 6, "node_group__node"),
rel_cls(7, 0, 2, "unit_group__commodity_group"),
rel_cls(7, 1, 5, "unit_group__commodity_group"),
rel_cls(8, 0, 5, "commodity_group__node_group"),
rel_cls(8, 1, 6, "commodity_group__node_group"),
rel_cls(9, 0, 2, "unit__commodity"),
rel_cls(9, 1, 5, "unit__commodity"),
rel_cls(10, 0, 2, "unit__commodity__direction"),
rel_cls(10, 1, 5, "unit__commodity__direction"),
rel_cls(10, 2, 1, "unit__commodity__direction"),
rel_cls(11, 0, 2, "unit__commodity__commodity"),
rel_cls(11, 1, 5, "unit__commodity__commodity"),
rel_cls(11, 2, 5, "unit__commodity__commodity"),
rel_cls(12, 0, 3, "connection__node__direction"),
rel_cls(12, 1, 6, "connection__node__direction"),
rel_cls(12, 2, 1, "connection__node__direction"),
rel_cls(13, 0, 3, "connection__node__node"),
rel_cls(13, 1, 6, "connection__node__node"),
rel_cls(13, 2, 6, "connection__node__node"),
rel_cls(14, 0, 6, "node__temporal_block"),
rel_cls(14, 1, 7, "node__temporal_block"),
rel_cls(15, 0, 4, "storage__unit"),
rel_cls(15, 1, 2, "storage__unit"),
rel_cls(16, 0, 4, "storage__connection"),
rel_cls(16, 1, 3, "storage__connection"),
rel_cls(17, 0, 4, "storage__commodity"),
rel_cls(17, 1, 5, "storage__commodity"),
],
)
engine.execute(
parameter_definition.insert(),
[
obj_par_def(1, "fom_cost", 2, "null"),
obj_par_def(2, "start_up_cost", 2, "null"),
obj_par_def(3, "shut_down_cost", 2, "null"),
obj_par_def(4, "number_of_units", 2, 1),
obj_par_def(5, "avail_factor", 2, 1),
obj_par_def(6, "min_down_time", 2, 0),
obj_par_def(7, "min_up_time", 2, 0),
obj_par_def(8, "start_datetime", 7, "null"),
obj_par_def(9, "end_datetime", 7, "null"),
obj_par_def(10, "time_slice_duration", 7, "null"),
obj_par_def(11, "demand", 6, 0),
obj_par_def(12, "online_variable_type", 2,
'"integer_online_variable"'),
obj_par_def(13, "fix_units_on", 2, "null"),
obj_par_def(14, "stor_state_cap", 4, 0),
obj_par_def(15, "frac_state_loss", 4, 0),
],
)
engine.execute(
parameter_definition.insert(),
[
rel_par_def(1001, "unit_conv_cap_to_flow", 9, 1),
rel_par_def(1002, "unit_capacity", 10, "null"),
rel_par_def(1003, "operating_cost", 10, "null"),
rel_par_def(1004, "vom_cost", 10, "null"),
rel_par_def(1005, "tax_net_flow", 8, "null"),
rel_par_def(1006, "tax_out_flow", 8, "null"),
rel_par_def(1007, "tax_in_flow", 8, "null"),
rel_par_def(1008, "fix_ratio_out_in", 11, "null"),
rel_par_def(1009, "fix_ratio_out_in", 12, "null"),
rel_par_def(1010, "max_ratio_out_in", 11, "null"),
rel_par_def(1011, "max_ratio_out_in", 12, "null"),
rel_par_def(1012, "min_ratio_out_in", 11, "null"),
rel_par_def(1013, "min_ratio_out_in", 12, "null"),
rel_par_def(1014, "minimum_operating_point", 9, "null"),
rel_par_def(1017, "stor_unit_discharg_eff", 15, 1),
rel_par_def(1018, "stor_unit_charg_eff", 15, 1),
rel_par_def(1019, "stor_conn_discharg_eff", 16, 1),
rel_par_def(1020, "stor_conn_charg_eff", 16, 1),
rel_par_def(1021, "max_cum_in_flow_bound", 7, "null"),
rel_par_def(1022, "fix_flow", 10, "null"),
rel_par_def(1023, "fix_trans", 12, "null"),
],
)
engine.execute(
parameter_tag.insert(),
[
par_tag(1, "duration", "duration in time"),
par_tag(2, "date_time", "a specific point in time"),
par_tag(3, "time_series", "time series data"),
par_tag(4, "time_pattern", "time patterned data"),
],
)
engine.execute(
parameter_definition_tag.insert(),
[
par_def_tag(11, 3),
par_def_tag(10, 1),
par_def_tag(8, 2),
par_def_tag(9, 2)
],
)
except DatabaseError as e:
raise SpineDBAPIError(
"Unable to add specific data structure for Spine Model: {}".format(
e.orig.args))
return engine
from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm.exc import NoResultFound
from sqlalchemy.orm.session import Session
from crate_anon.anonymise.config_singleton import config
from crate_anon.anonymise.constants import (
MAX_TRID,
TABLE_KWARGS,
TridType,
)
if TYPE_CHECKING:
from crate_anon.anonymise.scrub import PersonalizedScrubber
log = logging.getLogger(__name__)
admin_meta = MetaData()
AdminBase = declarative_base(metadata=admin_meta)
class PatientInfoConstants(object):
SECRET_MAP_TABLENAME = 'secret_map'
PID_FIELDNAME = "pid"
MPID_FIELDNAME = "mpid"
RID_FIELDNAME = "rid"
MRID_FIELDNAME = "mrid"
TRID_FIELDNAME = "trid"
class PatientInfo(AdminBase):
"""
Represent patient information in the secret admin database.
from sqlalchemy.dialects.postgresql import UUID
from sqlalchemy.sql import func
convention = {
'all_column_names': lambda constraint, table: '_'.join([
column.name for column in constraint.columns.values()
]),
'ix': 'ix__%(table_name)s__%(all_column_names)s',
'uq': 'uq__%(table_name)s__%(all_column_names)s',
'ck': 'ck__%(table_name)s__%(constraint_name)s',
'fk': 'fk__%(table_name)s__%(all_column_names)s__%(referred_table_name)s',
'pk': 'pk__%(table_name)s'
}
metadata = MetaData(naming_convention=convention)
names_table = Table(
'names',
metadata,
Column('id', Integer, autoincrement=True, primary_key=True, unique=True),
Column('name', String, nullable=False),
Column(
'local_uuid', UUID(as_uuid=True),
primary_key=True, nullable=False, unique=True
),
Column('date', DateTime(timezone=True), server_default=func.now()),
)
parse_company_table = Table(
'parsed_company',
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
from typing import Any
from sqlalchemy import MetaData
from sqlalchemy.ext.declarative import declarative_base
from airflow.configuration import conf
SQL_ALCHEMY_SCHEMA = conf.get("core", "SQL_ALCHEMY_SCHEMA")
metadata = (None if not SQL_ALCHEMY_SCHEMA or SQL_ALCHEMY_SCHEMA.isspace() else
MetaData(schema=SQL_ALCHEMY_SCHEMA))
Base = declarative_base(metadata=metadata) # type: Any
ID_LEN = 250
# used for typing
class Operator:
pass
def get_id_collation_args():
collation = conf.get('core', 'sql_engine_collation_for_ids', fallback=None)
if collation:
return {'collation': collation}
else:
def test_reflect_all(self, connection):
m = MetaData()
m.reflect(connection)
eq_(set(t.name for t in m.tables.values()), set(["admin_docindex"]))
from sqlalchemy.exc import NoSuchTableError
# Need our custom types, but don't import anything else from model
from galaxy.model.custom_types import TrimmedString
log = logging.getLogger( __name__ )
log.setLevel(logging.DEBUG)
handler = logging.StreamHandler( sys.stdout )
format = "%(name)s %(levelname)s %(asctime)s %(message)s"
formatter = logging.Formatter( format )
handler.setFormatter( formatter )
log.addHandler( handler )
now = datetime.datetime.utcnow
metadata = MetaData()
SkipToolTest_table = Table( "skip_tool_test", metadata,
Column( "id", Integer, primary_key=True ),
Column( "create_time", DateTime, default=now ),
Column( "update_time", DateTime, default=now, onupdate=now ),
Column( "repository_metadata_id", Integer, ForeignKey( "repository_metadata.id" ), index=True ),
Column( "initial_changeset_revision", TrimmedString( 255 ), index=True ),
Column( "comment" , TEXT ) )
def upgrade( migrate_engine ):
print __doc__
metadata.bind = migrate_engine
metadata.reflect()
# Initialize.
def _selfref_fk_fixture(self, table_args=(), table_kwargs={}):
m = MetaData()
t = Table('tname', m, Column('id', Integer, primary_key=True),
Column('parent_id', Integer, ForeignKey('tname.id')),
Column('data', String))
return ApplyBatchImpl(t, table_args, table_kwargs)
