def run_ablation_studies(args):
"""
Run the ablation study experiments reported in the paper.
"""
def set_up_lf_for_inference(args):
initialize_model_directory(args)
lf = construct_model(args)
lf.cuda()
lf.batch_size = args.dev_batch_size
lf.load_checkpoint(get_checkpoint_path(args))
lf.eval()
return lf
def rel_change(metrics, ab_system, kg_portion):
ab_system_metrics = metrics[ab_system][kg_portion]
base_metrics = metrics['ours'][kg_portion]
return int(np.round((ab_system_metrics - base_metrics) / base_metrics * 100))
entity_index_path = os.path.join(args.data_dir, 'entity2id.txt')
relation_index_path = os.path.join(args.data_dir, 'relation2id.txt')
if 'NELL' in args.data_dir:
adj_list_path = os.path.join(args.data_dir, 'adj_list.pkl')
seen_entities = data_utils.load_seen_entities(adj_list_path, entity_index_path)
else:
seen_entities = set()
dataset = os.path.basename(args.data_dir)
dev_path = os.path.join(args.data_dir, 'dev.triples')
dev_data = data_utils.load_triples(
dev_path, entity_index_path, relation_index_path, seen_entities=seen_entities, verbose=False)
to_m_rels, to_1_rels, (to_m_ratio, to_1_ratio) = data_utils.get_relations_by_type(args.data_dir, relation_index_path)
relation_by_types = (to_m_rels, to_1_rels)
to_m_ratio *= 100
to_1_ratio *= 100
seen_queries, (seen_ratio, unseen_ratio) = data_utils.get_seen_queries(args.data_dir, entity_index_path, relation_index_path)
seen_ratio *= 100
unseen_ratio *= 100
systems = ['ours', '-ad', '-rs']
mrrs, to_m_mrrs, to_1_mrrs, seen_mrrs, unseen_mrrs = {}, {}, {}, {}, {}
for system in systems:
print('** Evaluating {} system **'.format(system))
if system == '-ad':
args.action_dropout_rate = 0.0
if dataset == 'umls':
# adjust dropout hyperparameters
args.emb_dropout_rate = 0.3
args.ff_dropout_rate = 0.1
elif system == '-rs':
config_path = os.path.join('configs', '{}.sh'.format(dataset.lower()))
args = parser.parse_args()
args = data_utils.load_configs(args, config_path)
lf = set_up_lf_for_inference(args)
pred_scores = lf.forward(dev_data, verbose=False)
_, _, _, _, mrr = src.eval.hits_and_ranks(dev_data, pred_scores, lf.kg.dev_objects, verbose=True)
if to_1_ratio == 0:
to_m_mrr = mrr
to_1_mrr = -1
else:
to_m_mrr, to_1_mrr = src.eval.hits_and_ranks_by_relation_type(
dev_data, pred_scores, lf.kg.dev_objects, relation_by_types, verbose=True)
seen_mrr, unseen_mrr = src.eval.hits_and_ranks_by_seen_queries(
dev_data, pred_scores, lf.kg.dev_objects, seen_queries, verbose=True)
mrrs[system] = {'': mrr * 100}
to_m_mrrs[system] = {'': to_m_mrr * 100}
to_1_mrrs[system] = {'': to_1_mrr * 100}
seen_mrrs[system] = {'': seen_mrr * 100}
unseen_mrrs[system] = {'': unseen_mrr * 100}
_, _, _, _, mrr_full_kg = src.eval.hits_and_ranks(dev_data, pred_scores, lf.kg.all_objects, verbose=True)
if to_1_ratio == 0:
to_m_mrr_full_kg = mrr_full_kg
to_1_mrr_full_kg = -1
else:
to_m_mrr_full_kg, to_1_mrr_full_kg = src.eval.hits_and_ranks_by_relation_type(
dev_data, pred_scores, lf.kg.all_objects, relation_by_types, verbose=True)
seen_mrr_full_kg, unseen_mrr_full_kg = src.eval.hits_and_ranks_by_seen_queries(
dev_data, pred_scores, lf.kg.all_objects, seen_queries, verbose=True)
mrrs[system]['full_kg'] = mrr_full_kg * 100
to_m_mrrs[system]['full_kg'] = to_m_mrr_full_kg * 100
to_1_mrrs[system]['full_kg'] = to_1_mrr_full_kg * 100
seen_mrrs[system]['full_kg'] = seen_mrr_full_kg * 100
unseen_mrrs[system]['full_kg'] = unseen_mrr_full_kg * 100
# overall system comparison (table 3)
print('Partial graph evaluation')
print('--------------------------')
print('Overall system performance')
print('Ours(ConvE)\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f}'.format(mrrs['ours'][''], mrrs['-rs'][''], mrrs['-ad']['']))
print('--------------------------')
# performance w.r.t. relation types (table 4, 6)
print('Performance w.r.t. relation types')
print('\tTo-many\t\t\t\tTo-one\t\t')
print('%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})'.format(
to_m_ratio, to_m_mrrs['ours'][''], to_m_mrrs['-rs'][''], rel_change(to_m_mrrs, '-rs', ''), to_m_mrrs['-ad'][''], rel_change(to_m_mrrs, '-ad', ''),
to_1_ratio, to_1_mrrs['ours'][''], to_1_mrrs['-rs'][''], rel_change(to_1_mrrs, '-rs', ''), to_1_mrrs['-ad'][''], rel_change(to_1_mrrs, '-ad', '')))
print('--------------------------')
# performance w.r.t. seen queries (table 5, 7)
print('Performance w.r.t. seen/unseen queries')
print('\tSeen\t\t\t\tUnseen\t\t')
print('%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})'.format(
seen_ratio, seen_mrrs['ours'][''], seen_mrrs['-rs'][''], rel_change(seen_mrrs, '-rs', ''), seen_mrrs['-ad'][''], rel_change(seen_mrrs, '-ad', ''),
unseen_ratio, unseen_mrrs['ours'][''], unseen_mrrs['-rs'][''], rel_change(unseen_mrrs, '-rs', ''), unseen_mrrs['-ad'][''], rel_change(unseen_mrrs, '-ad', '')))
print()
print('Full graph evaluation')
print('--------------------------')
print('Overall system performance')
print('Ours(ConvE)\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f}'.format(mrrs['ours']['full_kg'], mrrs['-rs']['full_kg'], mrrs['-ad']['full_kg']))
print('--------------------------')
print('Performance w.r.t. relation types')
print('\tTo-many\t\t\t\tTo-one\t\t')
print('%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})'.format(
to_m_ratio, to_m_mrrs['ours']['full_kg'], to_m_mrrs['-rs']['full_kg'], rel_change(to_m_mrrs, '-rs', 'full_kg'), to_m_mrrs['-ad']['full_kg'], rel_change(to_m_mrrs, '-ad', 'full_kg'),
to_1_ratio, to_1_mrrs['ours']['full_kg'], to_1_mrrs['-rs']['full_kg'], rel_change(to_1_mrrs, '-rs', 'full_kg'), to_1_mrrs['-ad']['full_kg'], rel_change(to_1_mrrs, '-ad', 'full_kg')))
print('--------------------------')
print('Performance w.r.t. seen/unseen queries')
print('\tSeen\t\t\t\tUnseen\t\t')
print('%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD')
print('{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})'.format(
seen_ratio, seen_mrrs['ours']['full_kg'], seen_mrrs['-rs']['full_kg'], rel_change(seen_mrrs, '-rs', 'full_kg'), seen_mrrs['-ad']['full_kg'], rel_change(seen_mrrs, '-ad', 'full_kg'),
unseen_ratio, unseen_mrrs['ours']['full_kg'], unseen_mrrs['-rs']['full_kg'], rel_change(unseen_mrrs, '-rs', 'full_kg'), unseen_mrrs['-ad']['full_kg'], rel_change(unseen_mrrs, '-ad', 'full_kg')))
def run_ablation_studies(args):
"""
Run the ablation study experiments reported in the paper.
"""
def set_up_lf_for_inference(args):
initialize_model_directory(args)
lf = construct_model(args)
lf.cuda()
lf.batch_size = args.dev_batch_size
lf.load_checkpoint(get_checkpoint_path(args))
lf.eval()
return lf
def rel_change(metrics, ab_system, kg_portion):
ab_system_metrics = metrics[ab_system][kg_portion]
base_metrics = metrics["ours"][kg_portion]
return int(
np.round((ab_system_metrics - base_metrics) / base_metrics * 100))
entity_index_path = os.path.join(args.data_dir, "entity2id.txt")
relation_index_path = os.path.join(args.data_dir, "relation2id.txt")
if "NELL" in args.data_dir:
adj_list_path = os.path.join(args.data_dir, "adj_list.pkl")
seen_entities = data_utils.load_seen_entities(adj_list_path,
entity_index_path)
else:
seen_entities = set()
dataset = os.path.basename(args.data_dir)
dev_path = os.path.join(args.data_dir, "dev.triples")
dev_data = data_utils.load_triples(
dev_path,
entity_index_path,
relation_index_path,
seen_entities=seen_entities,
verbose=False,
)
to_m_rels, to_1_rels, (to_m_ratio,
to_1_ratio) = data_utils.get_relations_by_type(
args.data_dir, relation_index_path)
relation_by_types = (to_m_rels, to_1_rels)
to_m_ratio *= 100
to_1_ratio *= 100
seen_queries, (seen_ratio, unseen_ratio) = data_utils.get_seen_queries(
args.data_dir, entity_index_path, relation_index_path)
seen_ratio *= 100
unseen_ratio *= 100
systems = ["ours", "-ad", "-rs"]
mrrs, to_m_mrrs, to_1_mrrs, seen_mrrs, unseen_mrrs = {}, {}, {}, {}, {}
for system in systems:
print("** Evaluating {} system **".format(system))
if system == "-ad":
args.action_dropout_rate = 0.0
if dataset == "umls":
# adjust dropout hyperparameters
args.emb_dropout_rate = 0.3
args.ff_dropout_rate = 0.1
elif system == "-rs":
config_path = os.path.join("configs",
"{}.sh".format(dataset.lower()))
args = parser.parse_args()
args = data_utils.load_configs(args, config_path)
lf = set_up_lf_for_inference(args)
pred_scores = lf.forward(dev_data, verbose=False)
_, _, _, _, mrr = src.eval.hits_and_ranks(dev_data,
pred_scores,
lf.kg.dev_objects,
verbose=True)
if to_1_ratio == 0:
to_m_mrr = mrr
to_1_mrr = -1
else:
to_m_mrr, to_1_mrr = src.eval.hits_and_ranks_by_relation_type(
dev_data,
pred_scores,
lf.kg.dev_objects,
relation_by_types,
verbose=True,
)
seen_mrr, unseen_mrr = src.eval.hits_and_ranks_by_seen_queries(
dev_data,
pred_scores,
lf.kg.dev_objects,
seen_queries,
verbose=True)
mrrs[system] = {"": mrr * 100}
to_m_mrrs[system] = {"": to_m_mrr * 100}
to_1_mrrs[system] = {"": to_1_mrr * 100}
seen_mrrs[system] = {"": seen_mrr * 100}
unseen_mrrs[system] = {"": unseen_mrr * 100}
_, _, _, _, mrr_full_kg = src.eval.hits_and_ranks(dev_data,
pred_scores,
lf.kg.all_objects,
verbose=True)
if to_1_ratio == 0:
to_m_mrr_full_kg = mrr_full_kg
to_1_mrr_full_kg = -1
else:
(
to_m_mrr_full_kg,
to_1_mrr_full_kg,
) = src.eval.hits_and_ranks_by_relation_type(
dev_data,
pred_scores,
lf.kg.all_objects,
relation_by_types,
verbose=True,
)
seen_mrr_full_kg, unseen_mrr_full_kg = src.eval.hits_and_ranks_by_seen_queries(
dev_data,
pred_scores,
lf.kg.all_objects,
seen_queries,
verbose=True)
mrrs[system]["full_kg"] = mrr_full_kg * 100
to_m_mrrs[system]["full_kg"] = to_m_mrr_full_kg * 100
to_1_mrrs[system]["full_kg"] = to_1_mrr_full_kg * 100
seen_mrrs[system]["full_kg"] = seen_mrr_full_kg * 100
unseen_mrrs[system]["full_kg"] = unseen_mrr_full_kg * 100
# overall system comparison (table 3)
print("Partial graph evaluation")
print("--------------------------")
print("Overall system performance")
print("Ours(ConvE)\t-RS\t-AD")
print("{:.1f}\t{:.1f}\t{:.1f}".format(mrrs["ours"][""], mrrs["-rs"][""],
mrrs["-ad"][""]))
print("--------------------------")
# performance w.r.t. relation types (table 4, 6)
print("Performance w.r.t. relation types")
print("\tTo-many\t\t\t\tTo-one\t\t")
print("%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD")
print(
"{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})"
.format(
to_m_ratio,
to_m_mrrs["ours"][""],
to_m_mrrs["-rs"][""],
rel_change(to_m_mrrs, "-rs", ""),
to_m_mrrs["-ad"][""],
rel_change(to_m_mrrs, "-ad", ""),
to_1_ratio,
to_1_mrrs["ours"][""],
to_1_mrrs["-rs"][""],
rel_change(to_1_mrrs, "-rs", ""),
to_1_mrrs["-ad"][""],
rel_change(to_1_mrrs, "-ad", ""),
))
print("--------------------------")
# performance w.r.t. seen queries (table 5, 7)
print("Performance w.r.t. seen/unseen queries")
print("\tSeen\t\t\t\tUnseen\t\t")
print("%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD")
print(
"{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})"
.format(
seen_ratio,
seen_mrrs["ours"][""],
seen_mrrs["-rs"][""],
rel_change(seen_mrrs, "-rs", ""),
seen_mrrs["-ad"][""],
rel_change(seen_mrrs, "-ad", ""),
unseen_ratio,
unseen_mrrs["ours"][""],
unseen_mrrs["-rs"][""],
rel_change(unseen_mrrs, "-rs", ""),
unseen_mrrs["-ad"][""],
rel_change(unseen_mrrs, "-ad", ""),
))
print()
print("Full graph evaluation")
print("--------------------------")
print("Overall system performance")
print("Ours(ConvE)\t-RS\t-AD")
print("{:.1f}\t{:.1f}\t{:.1f}".format(mrrs["ours"]["full_kg"],
mrrs["-rs"]["full_kg"],
mrrs["-ad"]["full_kg"]))
print("--------------------------")
print("Performance w.r.t. relation types")
print("\tTo-many\t\t\t\tTo-one\t\t")
print("%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD")
print(
"{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})"
.format(
to_m_ratio,
to_m_mrrs["ours"]["full_kg"],
to_m_mrrs["-rs"]["full_kg"],
rel_change(to_m_mrrs, "-rs", "full_kg"),
to_m_mrrs["-ad"]["full_kg"],
rel_change(to_m_mrrs, "-ad", "full_kg"),
to_1_ratio,
to_1_mrrs["ours"]["full_kg"],
to_1_mrrs["-rs"]["full_kg"],
rel_change(to_1_mrrs, "-rs", "full_kg"),
to_1_mrrs["-ad"]["full_kg"],
rel_change(to_1_mrrs, "-ad", "full_kg"),
))
print("--------------------------")
print("Performance w.r.t. seen/unseen queries")
print("\tSeen\t\t\t\tUnseen\t\t")
print("%\tOurs\t-RS\t-AD\t%\tOurs\t-RS\t-AD")
print(
"{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})\t{:.1f}\t{:.1f}\t{:.1f} ({:d})\t{:.1f} ({:d})"
.format(
seen_ratio,
seen_mrrs["ours"]["full_kg"],
seen_mrrs["-rs"]["full_kg"],
rel_change(seen_mrrs, "-rs", "full_kg"),
seen_mrrs["-ad"]["full_kg"],
rel_change(seen_mrrs, "-ad", "full_kg"),
unseen_ratio,
unseen_mrrs["ours"]["full_kg"],
unseen_mrrs["-rs"]["full_kg"],
rel_change(unseen_mrrs, "-rs", "full_kg"),
unseen_mrrs["-ad"]["full_kg"],
rel_change(unseen_mrrs, "-ad", "full_kg"),
))