def _test_percents(self, human_classified_pickle, language):
'This method returns ntuple containing (matches, false_positive, false_negative, unknown)'
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
true_positive = 0.0
true_negative = 0.0
matches = 0.0
false_positive = 0.0
false_negative = 0.0
unknown = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability = self.classify(processed_entry.original_entry,
language)
if probability < self._low:
if not human_classified.classification[entry_id]:
matches += 1
true_negative += 1
else:
false_negative += 1
elif probability >= self._high:
if human_classified.classification[entry_id]:
matches += 1
true_positive += 1
else:
false_positive += 1
else:
unknown += 1
return (matches, true_positive, true_negative, false_positive,
false_negative, unknown, entry_count)
def _test_percents(self, human_classified_pickle, language):
'This method returns ntuple containing (matches, false_positive, false_negative, unknown)'
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
true_positive = 0.0
true_negative = 0.0
matches = 0.0
false_positive = 0.0
false_negative = 0.0
unknown = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability = self.classify(processed_entry.original_entry, language)
if probability < self._low:
if not human_classified.classification[entry_id]:
matches += 1
true_negative += 1
else:
false_negative += 1
elif probability >= self._high:
if human_classified.classification[entry_id]:
matches += 1
true_positive += 1
else:
false_positive += 1
else:
unknown += 1
return (matches, true_positive, true_negative, false_positive, false_negative, unknown, entry_count)
def run_tests(self, input_file, language):
'Method for running tests on input file and get time elapsed for classification of one entry'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
tmp = HumanClassification(input_file)
tmp.load()
self._logger.info('Running tests...')
tests = Tests()
tests.set_test_len(len(tmp.classification))
tests.set_train_len(len(self.human.classification))
tests.set_train_positive_len(self.human.get_positively_classified_count(language))
tests.set_train_negative_len(self.human.get_negatively_classified_count(language))
self._logger.info('Calculating corelation...')
tests.set_corelation(self._test_corelation(input_file, language))
self._logger.info('Calculating percentage of classification accuracy...')
tests.set_percents(self._test_percents(input_file, language))
print tests
def _test_corelation(self, human_classified_pickle, language):
'This method prints corelation between user defined input in human_classified_pickle and automatic classification.'
#
# covariance
# |
# C(X,Y) E(XY) - E(X)E(Y)
# corelation = ------------------ = ------------------------------------------- , a = E(XY), b = E(X), c = E(Y), d,= E(X^2), e = E(Y^2)
# d(X)d(Y) sqrt(E(X^2) - E(X)^2) sqrt(E(Y^2) - E(Y)^2)
# |
# standard deviations
#
# X - automatically calculated probabilities
# Y - human input probabilities
#
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
a = 0.0
b = 0.0
c = 0.0
d = 0.0
e = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability_auto = self.classify(processed_entry.original_entry,
language)
if human_classified.classification[entry_id]:
probability_human = self.HUMAN_RATING_PROBABILITY
else:
probability_human = (1 - self.HUMAN_RATING_PROBABILITY)
a += probability_human * probability_auto
b += probability_auto
c += probability_human
d += probability_auto * probability_auto
e += probability_human * probability_human
# E() values
a /= entry_count
b /= entry_count
c /= entry_count
d /= entry_count
e /= entry_count
return (a - (b * c)) / (sqrt(d - (b * b)) * sqrt(e - (c * c)))
def _test_corelation(self, human_classified_pickle, language): 'This method prints corelation between user defined input in human_classified_pickle and automatic classification.' # # covariance # | # C(X,Y) E(XY) - E(X)E(Y) # corelation = ------------------ = ------------------------------------------- , a = E(XY), b = E(X), c = E(Y), d,= E(X^2), e = E(Y^2) # d(X)d(Y) sqrt(E(X^2) - E(X)^2) sqrt(E(Y^2) - E(Y)^2) # | # standard deviations # # X - automatically calculated probabilities # Y - human input probabilities # human_classified = HumanClassification(human_classified_pickle) human_classified.load() entry_count = len(human_classified.classification) a = 0.0 b = 0.0 c = 0.0 d = 0.0 e = 0.0 for entry_id in human_classified.classification: processed_entry = self.db.get_entry_by_id(entry_id) probability_auto = self.classify(processed_entry.original_entry, language) if human_classified.classification[entry_id]: probability_human = self.HUMAN_RATING_PROBABILITY else: probability_human = (1 - self.HUMAN_RATING_PROBABILITY) a += probability_human * probability_auto b += probability_auto c += probability_human d += probability_auto * probability_auto e += probability_human * probability_human # E() values a /= entry_count b /= entry_count c /= entry_count d /= entry_count e /= entry_count return (a - (b * c)) / (sqrt(d - (b * b)) * sqrt(e - (c * c)))
def run_tests(self, input_file, language):
'Method for running tests on input file and get time elapsed for classification of one entry'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
tmp = HumanClassification(input_file)
tmp.load()
self._logger.info('Running tests...')
tests = Tests()
tests.set_test_len(len(tmp.classification))
tests.set_train_len(len(self.human.classification))
tests.set_train_positive_len(
self.human.get_positively_classified_count(language))
tests.set_train_negative_len(
self.human.get_negatively_classified_count(language))
self._logger.info('Calculating corelation...')
tests.set_corelation(self._test_corelation(input_file, language))
self._logger.info(
'Calculating percentage of classification accuracy...')
tests.set_percents(self._test_percents(input_file, language))
print tests
def __init__(self, low=0.5, high=0.5):
# classification thresholds
self._low = float(low)
self._high = float(high)
# add and setup logger
self._logger = logging.getLogger()
logging.basicConfig(level=logging.DEBUG)
# db connection
self.db = Connection()
# load info about allready classified entries
self._logger.info('Loading Allready classified entries...')
self.human = HumanClassification(
'/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/HumanClassification'
)
self.human.load()
# load database of words
self._logger.info('Loading word dictionary...')
self.word_dict = WordDictionary(
'/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/WordDictionary'
)
self.word_dict.load()
# timer
self._timer = timeit.Timer()
def human_classify(self, output_pickle, language):
'This method creates output_pickle file containing user defined classifications of entries. May be used for creating test data.'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
new_human_classify = HumanClassification(output_pickle)
new_human_classify.load()
try:
for entry in self.db.entries(language=language, entry_count=None, entry_offset=0):
# when entry was allready processed skip
if entry.id in new_human_classify.classification:
continue
print 'Original entry: \n"'+ entry.original_entry + '"\n automatic classification = ' + str(self.classify(entry.original_entry, language))
automatic_classification = self.classify(entry.original_entry, language)
if automatic_classification < self._low:
auto = 'n'
continue # TODO: odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))['+ auto +']: ')
if answer == 'y':
new_human_classify.classification[entry.id] = True
elif answer == 'n':
new_human_classify.classification[entry.id] = False
elif answer == 'END':
break
else:
if automatic_classification < self._low:
new_human_classify.classification[entry.id] = False
elif automatic_classification >= self._high:
new_human_classify.classification[entry.id] = True
else:
new_human_classify.classification[entry.id] = None
print 'Cassified count = ' + str(len(new_human_classify.classification))
except KeyboardInterrupt:
pass
new_human_classify.store()
def __init__(self, low=0.5, high=0.5):
# classification thresholds
self._low = float(low)
self._high = float(high)
# add and setup logger
self._logger = logging.getLogger()
logging.basicConfig(level=logging.DEBUG)
# db connection
self.db = Connection()
# load info about allready classified entries
self._logger.info('Loading Allready classified entries...')
self.human = HumanClassification('/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/HumanClassification')
self.human.load()
# load database of words
self._logger.info('Loading word dictionary...')
self.word_dict = WordDictionary('/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/WordDictionary')
self.word_dict.load()
# timer
self._timer = timeit.Timer()
def human_classify(self, output_pickle, language):
'This method creates output_pickle file containing user defined classifications of entries. May be used for creating test data.'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
new_human_classify = HumanClassification(output_pickle)
new_human_classify.load()
try:
for entry in self.db.entries(language=language,
entry_count=None,
entry_offset=0):
# when entry was allready processed skip
if entry.id in new_human_classify.classification:
continue
print 'Original entry: \n"' + entry.original_entry + '"\n automatic classification = ' + str(
self.classify(entry.original_entry, language))
automatic_classification = self.classify(
entry.original_entry, language)
if automatic_classification < self._low:
auto = 'n'
continue # TODO: odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))[' +
auto + ']: ')
if answer == 'y':
new_human_classify.classification[entry.id] = True
elif answer == 'n':
new_human_classify.classification[entry.id] = False
elif answer == 'END':
break
else:
if automatic_classification < self._low:
new_human_classify.classification[entry.id] = False
elif automatic_classification >= self._high:
new_human_classify.classification[entry.id] = True
else:
new_human_classify.classification[entry.id] = None
print 'Cassified count = ' + str(
len(new_human_classify.classification))
except KeyboardInterrupt:
pass
new_human_classify.store()
class Classifier:
'''Class using for classification of tweets. Use classify() method for classification, train() method for training of bayesian filter.'''
MAX_TOKEN_SIZE = 6 # defines word count in dictionary tuples
HUMAN_RATING_PROBABILITY = 0.99
def __init__(self, low=0.5, high=0.5):
# classification thresholds
self._low = float(low)
self._high = float(high)
# add and setup logger
self._logger = logging.getLogger()
logging.basicConfig(level=logging.DEBUG)
# db connection
self.db = Connection()
# load info about allready classified entries
self._logger.info('Loading Allready classified entries...')
self.human = HumanClassification('/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/HumanClassification')
self.human.load()
# load database of words
self._logger.info('Loading word dictionary...')
self.word_dict = WordDictionary('/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/WordDictionary')
self.word_dict.load()
# timer
self._timer = timeit.Timer()
def _add_classification(self, entry, classification):
'Add each token to word dictionary for futher classification.'
language = entry.get_language()
for i in xrange(1, self.MAX_TOKEN_SIZE + 1):
# for each token add to word dictionary
for token in entry.get_token(i):
self.word_dict.words.setdefault(language, {}).setdefault(token, {'count':0, 'weight':0})['count'] += 1
if classification:
self.word_dict.words[language][token]['weight'] += self.HUMAN_RATING_PROBABILITY
else:
self.word_dict.words[language][token]['weight'] += (1 - self.HUMAN_RATING_PROBABILITY)
def _add_to_human_classification(self, entry, classification):
'Adds classified text to human classification. Stores classification, text and language of each text.'
self.human.classification[entry.get_id()] = (classification, entry.get_guid(), entry.get_original_entry(), entry.get_language())
if classification is None:
return
self._add_classification(entry, classification)
def train(self, language, count=None, offset=0):
'Given the language and optionaly count or offset shows dialog for realning'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
try:
for entry in self.db.entries(language=language, entry_count=10000, entry_offset=offset):
# when entry was allready processed apply and skip
if entry.id in self.human.classification:
continue
# ask whether entry is relevant
automatic_classification = self.classify(entry.original_entry, language)
print 'Original entry(' + str(entry.id) + '): \n"'+ entry.original_entry + '"\n automatic classification = ' + str(automatic_classification)
if automatic_classification < self._low:
auto = 'n'
continue # TODO:odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))[' + auto + ']: ')
if answer == 'y':
self._add_to_human_classification(entry, True)
elif answer == 'n':
self._add_to_human_classification(entry, False)
elif answer == '?':
continue
elif answer == 'END':
break
else:
if automatic_classification < self._low:
self._add_to_human_classification(entry, False)
elif automatic_classification >= self._high:
self._add_to_human_classification(entry, True)
else:
continue
print 'after classification: ' + str(self.classify(entry.original_entry, language))
except KeyboardInterrupt:
pass
# store human input and word_dictionary
self.human.store()
self.word_dict.store()
def manual_train(self, text, language, classification):
'Method for manual training of bayesian filter.'
e = Entry(None, text, language)
if classification is True:
self._add_classification(e, True)
if classification is False:
self._add_classification(e, False)
self.word_dict.store()
def train_from_human_classification(self, filename, language):
'Method for training current bayesian filter from external human classification file'
filehandler = open(filename, 'rb')
content = pickle.load(filehandler)
for entry_id in content:
e = Entry(entry_id, list(content[entry_id])[1], list(content[entry_id])[2])
if e.get_language() == language:
self._add_to_human_classification(e, list(content[entry_id])[0])
self.human.store()
self.word_dict.store()
def regenerate_word_dict(self):
'regenerate word dictionary according to human_input.'
print self.human.classification
self.word_dict.words = {}
# go through human classification and create new word dictionary using classification
for entry_id in self.human.classification:
e = Entry(entry_id, list(self.human.classification[entry_id])[1], list(self.human.classification[entry_id])[2])
if list(self.human.classification[entry_id])[0] == True:
self._add_classification(e, True)
if list(self.human.classification[entry_id])[0] == False:
self._add_classification(e, False)
self.word_dict.store()
def human_classify(self, output_pickle, language):
'This method creates output_pickle file containing user defined classifications of entries. May be used for creating test data.'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
new_human_classify = HumanClassification(output_pickle)
new_human_classify.load()
try:
for entry in self.db.entries(language=language, entry_count=None, entry_offset=0):
# when entry was allready processed skip
if entry.id in new_human_classify.classification:
continue
print 'Original entry: \n"'+ entry.original_entry + '"\n automatic classification = ' + str(self.classify(entry.original_entry, language))
automatic_classification = self.classify(entry.original_entry, language)
if automatic_classification < self._low:
auto = 'n'
continue # TODO: odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))['+ auto +']: ')
if answer == 'y':
new_human_classify.classification[entry.id] = True
elif answer == 'n':
new_human_classify.classification[entry.id] = False
elif answer == 'END':
break
else:
if automatic_classification < self._low:
new_human_classify.classification[entry.id] = False
elif automatic_classification >= self._high:
new_human_classify.classification[entry.id] = True
else:
new_human_classify.classification[entry.id] = None
print 'Cassified count = ' + str(len(new_human_classify.classification))
except KeyboardInterrupt:
pass
new_human_classify.store()
def classify(self, text, language):
'''Given input text and language, method calculates probability of text being relevant to topic. @result probability that text is relevant'''
input_entry = Entry(id=None, guid=None, entry=text, language=language)
self.word_dict.words.setdefault(language, {})
# for each token claculate probability of being relevant to topic
# and calculate according to bayes theorem
#
# p1p2p3........pn a
# P = ------------------------------------------ = -------
# p1p2p3........pn + (1-p1)(1-p2)...(1-pn) a + b
#
a = 1.0
b = 1.0
for i in xrange(1, self.MAX_TOKEN_SIZE + 1):
for token in input_entry.get_token(i):
if not token in self.word_dict.words[language]:
probability = 0.5
else:
token_stats = self.word_dict.words[language][token]
probability = token_stats['weight'] / token_stats['count']
a *= probability
b *= 1 - probability
if a + b == 0:
return 0
else:
result = a / (a + b)
if result == 0.5:
return -1
else:
return a / (a + b)
def _test_corelation(self, human_classified_pickle, language):
'This method prints corelation between user defined input in human_classified_pickle and automatic classification.'
#
# covariance
# |
# C(X,Y) E(XY) - E(X)E(Y)
# corelation = ------------------ = ------------------------------------------- , a = E(XY), b = E(X), c = E(Y), d,= E(X^2), e = E(Y^2)
# d(X)d(Y) sqrt(E(X^2) - E(X)^2) sqrt(E(Y^2) - E(Y)^2)
# |
# standard deviations
#
# X - automatically calculated probabilities
# Y - human input probabilities
#
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
a = 0.0
b = 0.0
c = 0.0
d = 0.0
e = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability_auto = self.classify(processed_entry.original_entry, language)
if human_classified.classification[entry_id]:
probability_human = self.HUMAN_RATING_PROBABILITY
else:
probability_human = (1 - self.HUMAN_RATING_PROBABILITY)
a += probability_human * probability_auto
b += probability_auto
c += probability_human
d += probability_auto * probability_auto
e += probability_human * probability_human
# E() values
a /= entry_count
b /= entry_count
c /= entry_count
d /= entry_count
e /= entry_count
return (a - (b * c)) / (sqrt(d - (b * b)) * sqrt(e - (c * c)))
def _test_percents(self, human_classified_pickle, language):
'This method returns ntuple containing (matches, false_positive, false_negative, unknown)'
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
true_positive = 0.0
true_negative = 0.0
matches = 0.0
false_positive = 0.0
false_negative = 0.0
unknown = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability = self.classify(processed_entry.original_entry, language)
if probability < self._low:
if not human_classified.classification[entry_id]:
matches += 1
true_negative += 1
else:
false_negative += 1
elif probability >= self._high:
if human_classified.classification[entry_id]:
matches += 1
true_positive += 1
else:
false_positive += 1
else:
unknown += 1
return (matches, true_positive, true_negative, false_positive, false_negative, unknown, entry_count)
def run_tests(self, input_file, language):
'Method for running tests on input file and get time elapsed for classification of one entry'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
tmp = HumanClassification(input_file)
tmp.load()
self._logger.info('Running tests...')
tests = Tests()
tests.set_test_len(len(tmp.classification))
tests.set_train_len(len(self.human.classification))
tests.set_train_positive_len(self.human.get_positively_classified_count(language))
tests.set_train_negative_len(self.human.get_negatively_classified_count(language))
self._logger.info('Calculating corelation...')
tests.set_corelation(self._test_corelation(input_file, language))
self._logger.info('Calculating percentage of classification accuracy...')
tests.set_percents(self._test_percents(input_file, language))
print tests
def get_time(self):
'Method for calculating time needed for one entry classification'
self._logger.info('Downloading entries to run tests on...')
i = 0
imax = 1000
entries = []
for entry in self.db.entries(language='en', entry_count=imax):
i += 1
if i >= imax:
break
entries.append(entry.original_entry)
self._logger.info('Masuring amount of entries to be calculated in 1sec')
repetitions = 100
result_avg = 0.0
for i in xrange(0, repetitions):
average = 0
for j in xrange(0, imax - 1):
start = time.time()
self.classify(entries[j], 'en')
average += time.time() - start
average /= imax
result_avg += average
result_avg /= repetitions
return 'Classifier is able to classify ' + str(round(1/result_avg, 2)) + ' entries in one second.'
def export_to_xml(self, language, specification):
'Method exports all data to xml files'
self.word_dict.to_xml(filename='XML/word_dict', specification=specification)
self.human.to_xml(self.db, 'XML/human_classification', language=language)
def fix_old_human_classification(self, filename):
'method converts old human classification file to new one inlcluding text of tweets'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
file = open(filename, 'rb')
content = pickle.load(file)
new_content = {}
for entry_id in content:
e = self.db.get_entry_by_id(entry_id)
if e:
new_content[entry_id] = (content[entry_id], e.original_entry, e.get_language())
new_file = open(filename +'new', 'wb')
pickle.dump(new_content, new_file)
def fix_old_human_classification2(self, filename):
'method converts old human classification file to new one inlcluding text of tweets'
self.db.connect(user='******', database='meco', host='localhost', port=5432)
file = open(filename, 'rb')
content = pickle.load(file)
new_content = {}
for entry_id in content:
e = self.db.get_entry_by_id(entry_id)
if e:
new_content[entry_id] = (list(content[entry_id])[0], e.get_guid(), e.get_original_entry(), e.get_language())
new_file = open(filename +'_new', 'wb')
pickle.dump(new_content, new_file)
def train_from_file(self, filename, language, classification):
'method trains classifier from some file'
file = open(filename, 'r')
for line in file:
e = Entry(None, None, line, language)
self._add_to_human_classification(e, classification)
self.human.store()
self.word_dict.store()
class Classifier:
'''Class using for classification of tweets. Use classify() method for classification, train() method for training of bayesian filter.'''
MAX_TOKEN_SIZE = 6 # defines word count in dictionary tuples
HUMAN_RATING_PROBABILITY = 0.99
def __init__(self, low=0.5, high=0.5):
# classification thresholds
self._low = float(low)
self._high = float(high)
# add and setup logger
self._logger = logging.getLogger()
logging.basicConfig(level=logging.DEBUG)
# db connection
self.db = Connection()
# load info about allready classified entries
self._logger.info('Loading Allready classified entries...')
self.human = HumanClassification(
'/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/HumanClassification'
)
self.human.load()
# load database of words
self._logger.info('Loading word dictionary...')
self.word_dict = WordDictionary(
'/mnt/minerva1/nlp/projects/twitter_classification/TwitterClassifier/pickles/WordDictionary'
)
self.word_dict.load()
# timer
self._timer = timeit.Timer()
def _add_classification(self, entry, classification):
'Add each token to word dictionary for futher classification.'
language = entry.get_language()
for i in xrange(1, self.MAX_TOKEN_SIZE + 1):
# for each token add to word dictionary
for token in entry.get_token(i):
self.word_dict.words.setdefault(language, {}).setdefault(
token, {
'count': 0,
'weight': 0
})['count'] += 1
if classification:
self.word_dict.words[language][token][
'weight'] += self.HUMAN_RATING_PROBABILITY
else:
self.word_dict.words[language][token]['weight'] += (
1 - self.HUMAN_RATING_PROBABILITY)
def _add_to_human_classification(self, entry, classification):
'Adds classified text to human classification. Stores classification, text and language of each text.'
self.human.classification[entry.get_id()] = (
classification, entry.get_guid(), entry.get_original_entry(),
entry.get_language())
if classification is None:
return
self._add_classification(entry, classification)
def train(self, language, count=None, offset=0):
'Given the language and optionaly count or offset shows dialog for realning'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
try:
for entry in self.db.entries(language=language,
entry_count=10000,
entry_offset=offset):
# when entry was allready processed apply and skip
if entry.id in self.human.classification:
continue
# ask whether entry is relevant
automatic_classification = self.classify(
entry.original_entry, language)
print 'Original entry(' + str(
entry.id
) + '): \n"' + entry.original_entry + '"\n automatic classification = ' + str(
automatic_classification)
if automatic_classification < self._low:
auto = 'n'
continue # TODO:odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))[' +
auto + ']: ')
if answer == 'y':
self._add_to_human_classification(entry, True)
elif answer == 'n':
self._add_to_human_classification(entry, False)
elif answer == '?':
continue
elif answer == 'END':
break
else:
if automatic_classification < self._low:
self._add_to_human_classification(entry, False)
elif automatic_classification >= self._high:
self._add_to_human_classification(entry, True)
else:
continue
print 'after classification: ' + str(
self.classify(entry.original_entry, language))
except KeyboardInterrupt:
pass
# store human input and word_dictionary
self.human.store()
self.word_dict.store()
def manual_train(self, text, language, classification):
'Method for manual training of bayesian filter.'
e = Entry(None, text, language)
if classification is True:
self._add_classification(e, True)
if classification is False:
self._add_classification(e, False)
self.word_dict.store()
def train_from_human_classification(self, filename, language):
'Method for training current bayesian filter from external human classification file'
filehandler = open(filename, 'rb')
content = pickle.load(filehandler)
for entry_id in content:
e = Entry(entry_id,
list(content[entry_id])[1],
list(content[entry_id])[2])
if e.get_language() == language:
self._add_to_human_classification(e,
list(content[entry_id])[0])
self.human.store()
self.word_dict.store()
def regenerate_word_dict(self):
'regenerate word dictionary according to human_input.'
print self.human.classification
self.word_dict.words = {}
# go through human classification and create new word dictionary using classification
for entry_id in self.human.classification:
e = Entry(entry_id,
list(self.human.classification[entry_id])[1],
list(self.human.classification[entry_id])[2])
if list(self.human.classification[entry_id])[0] == True:
self._add_classification(e, True)
if list(self.human.classification[entry_id])[0] == False:
self._add_classification(e, False)
self.word_dict.store()
def human_classify(self, output_pickle, language):
'This method creates output_pickle file containing user defined classifications of entries. May be used for creating test data.'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
new_human_classify = HumanClassification(output_pickle)
new_human_classify.load()
try:
for entry in self.db.entries(language=language,
entry_count=None,
entry_offset=0):
# when entry was allready processed skip
if entry.id in new_human_classify.classification:
continue
print 'Original entry: \n"' + entry.original_entry + '"\n automatic classification = ' + str(
self.classify(entry.original_entry, language))
automatic_classification = self.classify(
entry.original_entry, language)
if automatic_classification < self._low:
auto = 'n'
continue # TODO: odstranit
elif automatic_classification >= self._high:
auto = 'y'
else:
auto = '?'
answer = raw_input('Is this entry relevant? (y/n/?/END))[' +
auto + ']: ')
if answer == 'y':
new_human_classify.classification[entry.id] = True
elif answer == 'n':
new_human_classify.classification[entry.id] = False
elif answer == 'END':
break
else:
if automatic_classification < self._low:
new_human_classify.classification[entry.id] = False
elif automatic_classification >= self._high:
new_human_classify.classification[entry.id] = True
else:
new_human_classify.classification[entry.id] = None
print 'Cassified count = ' + str(
len(new_human_classify.classification))
except KeyboardInterrupt:
pass
new_human_classify.store()
def classify(self, text, language):
'''Given input text and language, method calculates probability of text being relevant to topic. @result probability that text is relevant'''
input_entry = Entry(id=None, guid=None, entry=text, language=language)
self.word_dict.words.setdefault(language, {})
# for each token claculate probability of being relevant to topic
# and calculate according to bayes theorem
#
# p1p2p3........pn a
# P = ------------------------------------------ = -------
# p1p2p3........pn + (1-p1)(1-p2)...(1-pn) a + b
#
a = 1.0
b = 1.0
for i in xrange(1, self.MAX_TOKEN_SIZE + 1):
for token in input_entry.get_token(i):
if not token in self.word_dict.words[language]:
probability = 0.5
else:
token_stats = self.word_dict.words[language][token]
probability = token_stats['weight'] / token_stats['count']
a *= probability
b *= 1 - probability
if a + b == 0:
return 0
else:
result = a / (a + b)
if result == 0.5:
return -1
else:
return a / (a + b)
def _test_corelation(self, human_classified_pickle, language):
'This method prints corelation between user defined input in human_classified_pickle and automatic classification.'
#
# covariance
# |
# C(X,Y) E(XY) - E(X)E(Y)
# corelation = ------------------ = ------------------------------------------- , a = E(XY), b = E(X), c = E(Y), d,= E(X^2), e = E(Y^2)
# d(X)d(Y) sqrt(E(X^2) - E(X)^2) sqrt(E(Y^2) - E(Y)^2)
# |
# standard deviations
#
# X - automatically calculated probabilities
# Y - human input probabilities
#
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
a = 0.0
b = 0.0
c = 0.0
d = 0.0
e = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability_auto = self.classify(processed_entry.original_entry,
language)
if human_classified.classification[entry_id]:
probability_human = self.HUMAN_RATING_PROBABILITY
else:
probability_human = (1 - self.HUMAN_RATING_PROBABILITY)
a += probability_human * probability_auto
b += probability_auto
c += probability_human
d += probability_auto * probability_auto
e += probability_human * probability_human
# E() values
a /= entry_count
b /= entry_count
c /= entry_count
d /= entry_count
e /= entry_count
return (a - (b * c)) / (sqrt(d - (b * b)) * sqrt(e - (c * c)))
def _test_percents(self, human_classified_pickle, language):
'This method returns ntuple containing (matches, false_positive, false_negative, unknown)'
human_classified = HumanClassification(human_classified_pickle)
human_classified.load()
entry_count = len(human_classified.classification)
true_positive = 0.0
true_negative = 0.0
matches = 0.0
false_positive = 0.0
false_negative = 0.0
unknown = 0.0
for entry_id in human_classified.classification:
processed_entry = self.db.get_entry_by_id(entry_id)
probability = self.classify(processed_entry.original_entry,
language)
if probability < self._low:
if not human_classified.classification[entry_id]:
matches += 1
true_negative += 1
else:
false_negative += 1
elif probability >= self._high:
if human_classified.classification[entry_id]:
matches += 1
true_positive += 1
else:
false_positive += 1
else:
unknown += 1
return (matches, true_positive, true_negative, false_positive,
false_negative, unknown, entry_count)
def run_tests(self, input_file, language):
'Method for running tests on input file and get time elapsed for classification of one entry'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
tmp = HumanClassification(input_file)
tmp.load()
self._logger.info('Running tests...')
tests = Tests()
tests.set_test_len(len(tmp.classification))
tests.set_train_len(len(self.human.classification))
tests.set_train_positive_len(
self.human.get_positively_classified_count(language))
tests.set_train_negative_len(
self.human.get_negatively_classified_count(language))
self._logger.info('Calculating corelation...')
tests.set_corelation(self._test_corelation(input_file, language))
self._logger.info(
'Calculating percentage of classification accuracy...')
tests.set_percents(self._test_percents(input_file, language))
print tests
def get_time(self):
'Method for calculating time needed for one entry classification'
self._logger.info('Downloading entries to run tests on...')
i = 0
imax = 1000
entries = []
for entry in self.db.entries(language='en', entry_count=imax):
i += 1
if i >= imax:
break
entries.append(entry.original_entry)
self._logger.info(
'Masuring amount of entries to be calculated in 1sec')
repetitions = 100
result_avg = 0.0
for i in xrange(0, repetitions):
average = 0
for j in xrange(0, imax - 1):
start = time.time()
self.classify(entries[j], 'en')
average += time.time() - start
average /= imax
result_avg += average
result_avg /= repetitions
return 'Classifier is able to classify ' + str(round(
1 / result_avg, 2)) + ' entries in one second.'
def export_to_xml(self, language, specification):
'Method exports all data to xml files'
self.word_dict.to_xml(filename='XML/word_dict',
specification=specification)
self.human.to_xml(self.db,
'XML/human_classification',
language=language)
def fix_old_human_classification(self, filename):
'method converts old human classification file to new one inlcluding text of tweets'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
file = open(filename, 'rb')
content = pickle.load(file)
new_content = {}
for entry_id in content:
e = self.db.get_entry_by_id(entry_id)
if e:
new_content[entry_id] = (content[entry_id], e.original_entry,
e.get_language())
new_file = open(filename + 'new', 'wb')
pickle.dump(new_content, new_file)
def fix_old_human_classification2(self, filename):
'method converts old human classification file to new one inlcluding text of tweets'
self.db.connect(user='******',
database='meco',
host='localhost',
port=5432)
file = open(filename, 'rb')
content = pickle.load(file)
new_content = {}
for entry_id in content:
e = self.db.get_entry_by_id(entry_id)
if e:
new_content[entry_id] = (list(content[entry_id])[0],
e.get_guid(), e.get_original_entry(),
e.get_language())
new_file = open(filename + '_new', 'wb')
pickle.dump(new_content, new_file)
def train_from_file(self, filename, language, classification):
'method trains classifier from some file'
file = open(filename, 'r')
for line in file:
e = Entry(None, None, line, language)
self._add_to_human_classification(e, classification)
self.human.store()
self.word_dict.store()