def init_anatomy(args):
args = anat.read_cmd_args(
dict(subject=args.subject,
remote_subject_dir=args.remote_subject_dir,
exclude='create_new_subject_blend_file',
ignore_missing=True))
anat.call_main(args)
def anatomy_preproc(args):
args = anat.read_cmd_args(dict(
subject=args.subject,
remote_subject_dir='/autofs/space/lilli_001/users/DARPA-Recons/{subject}',
high_level_atlas_name='darpa_atlas'
))
anat.call_main(args)
def anatomy_preproc(args, subject=''):
args = anat.read_cmd_args(
dict(subject=args.subject if subject == '' else subject,
remote_subject_dir=
'/autofs/space/lilli_001/users/DARPA-Recons/{subject}',
high_level_atlas_name='darpa_atlas',
function='create_annotation,create_high_level_atlas',
ignore_missing=True))
anat.call_main(args)
def calc_anatomy(subject, atlas, remote_subject_dir, n_jobs):
from src.preproc import anatomy as anat
args = anat.read_cmd_args(
dict(subject=subject,
atlas=atlas,
function='all,check_bem',
remote_subject_dir=remote_subject_dir,
exclude='create_new_subject_blend_file',
n_jobs=n_jobs))
anat.call_main(args)