def __init__(self,
frame,
share_column='vote_share',
group_by='state',
covariate_columns=None,
weight_column=None,
year_column='year',
redistrict_column=None,
district_id='district_id',
missing='drop',
uncontested=None,
break_on_GIGO=True):
super().__init__(frame,
share_column=share_column,
covariates=covariate_columns,
weight_column=weight_column,
year_column=year_column,
redistrict_column=redistrict_column,
district_id=district_id,
missing=missing,
uncontested=uncontested,
break_on_GIGO=break_on_GIGO)
self._years = np.sort(self.long.year.unique())
self._covariate_cols += ['grouped_vs']
self._decade_starts = np.sort(
list(set([_year_to_decade(yr) for yr in self.years])))
self.decades = {dec: [] for dec in self._decade_starts}
for i, (yr, wide) in enumerate(zip(self.years, self.wide)):
if group_by is not None:
grouped_vs = wide.groupby(
group_by).vote_share.mean().to_frame()
grouped_vs.columns = ['grouped_vs']
grouped_vs = grouped_vs.fillna(.5)
self.wide[i] = wide.merge(grouped_vs,
left_on=group_by,
right_index=True)
self.wide[i]['grouped_vs'] = self.wide[i]['grouped_vs'].fillna(
.5)
else:
grouped_vs = wide.vote_share.mean()
self.wide[i]['grouped_vs'] = grouped_vs
self.decades[_year_to_decade(yr)].append(self.wide[i])
self.models = []
for yr in self._decade_starts:
self.decades[yr] = pd.concat(self.decades[yr], axis=0, sort=True)
# WLS Yields incredibly precise simulation values? Not sure why.
X = sm.add_constant(self.decades[yr][self._covariate_cols]).values
Y = self.decades[yr].vote_share.values
Y[np.isnan(Y)] = self.decades[yr]['grouped_vs'].values[np.isnan(Y)]
if weight_column is None:
weights = None
self.models.append(sm.GLS(Y, X).fit())
else:
weights = self.decades[yr].weight
self.models.append(sm.GLS(Y, X, sigma=weights).fit())
def compare_models(y, smaller_model_list, bigger_model_list): model_null = sm.GLS(y,smaller_model_list) model_alternative = sm.GLS(y, bigger_model_list) params_null = sm.GLS(y,smaller_model_list).fit().params params_alternative = sm.GLS(y, bigger_model_list).fit().params null = model_null.loglike(params_null) alternative = model_alternative.loglike(params_alternative) info_small_model = model_null.fit().summary() info_big_model = model_alternative.fit().summary() rejected = llr_test(null, alternative) return rejected, info_small_model, info_big_model
def best_model_in_the_class(dict_data, combinations):
helper_dict = {}
helper_list = []
combinations_dict = {}
r_squared = {i: [] for i in range(0, len(combinations))}
for i in range(0, len(combinations)):
combinations_dict[i] = combinations[i]
#create weights
#create proper data for Linear Regression
for key in combinations_dict.keys():
for i in range(0, len(dict_data['Intel'])):
for item in combinations_dict[key]:
helper_dict[i] = [v[i] for k, v in dict_data.items() if k in combinations_dict[key]]
helper_list = [value for key, value in sorted(helper_dict.items())]
model = sm.GLS(y, helper_list)
regression = model.fit()
r = regression.rsquared
r_squared[key].append(r)
#map the results into final
determination_combination_dict = {}
for k1 in combinations_dict.keys():
for k2 in r_squared.keys():
if k1 == k2:
determination_combination_dict[float(r_squared[k2][0])] = list(combinations_dict[k1])
#choose the best model among the class
best_r = max(determination_combination_dict.keys())
best_model = determination_combination_dict[best_r]
return best_model, determination_combination_dict, r_squared, helper_dict, helper_list
def vcfassoc(formula, covariate_df, groups=None):
y, X = patsy.dmatrices(str(formula), covariate_df, return_type='dataframe')
# get the column containing genotype
ix = get_genotype_ix(X)
Binomial = sm.families.Binomial
logit = sm.families.links.Logit()
if groups is not None:
#covariate_df['grps'] = map(str, range(len(covariate_df) / 8)) * 8
if not isinstance(groups, (pd.DataFrame, np.ndarray)):
cov = Exchangeable()
model = sm.GEE(y,
X,
groups=covariate_df[groups],
cov_struct=cov,
family=Binomial())
else:
model = sm.GLS(logit(y), X, sigma=groups.ix[X.index, X.index])
else:
model = sm.GLM(y, X, missing='drop', family=Binomial())
result = model.fit(maxiter=1000)
res = {
'OR': np.exp(result.params[ix]),
'pvalue': result.pvalues[ix],
'z': result.tvalues[ix],
'OR_CI': tuple(np.exp(result.conf_int().ix[ix, :])),
}
try:
res['df_resid'] = result.df_resid
except AttributeError:
pass
return res
def gls(data, xseq, **params):
"""
Fit GLS
"""
if params['formula']:
return gls_formula(data, xseq, **params)
X = sm.add_constant(data['x'])
Xseq = sm.add_constant(xseq)
init_kwargs, fit_kwargs = separate_method_kwargs(params['method_args'],
sm.OLS, sm.OLS.fit)
model = sm.GLS(data['y'], X, **init_kwargs)
results = model.fit(**fit_kwargs)
data = pd.DataFrame({'x': xseq})
data['y'] = results.predict(Xseq)
if params['se']:
alpha = 1 - params['level']
prstd, iv_l, iv_u = wls_prediction_std(results, Xseq, alpha=alpha)
data['se'] = prstd
data['ymin'] = iv_l
data['ymax'] = iv_u
return data
def simple_regression_example():
# Load data.
spector_data = sm.datasets.spector.load()
spector_data.exog = sm.add_constant(spector_data.exog, prepend=False)
# Fit and summarize model.
# OLS: ordinary least squares for i.i.d. errors Sigma = I.
mod = sm.OLS(spector_data.endog, spector_data.exog)
res = mod.fit()
print(res.summary())
# GLS: generalized least squares for arbitrary covariance Sigma.
mod = sm.GLS(spector_data.endog, spector_data.exog)
res = mod.fit()
print(res.summary())
# WLS: weighted least squares for heteroskedastic errors diag(Sigma).
mod = sm.WLS(spector_data.endog, spector_data.exog)
res = mod.fit()
print(res.summary())
# GLSAR: feasible generalized least squares with autocorrelated AR(p) errors Sigma = Sigma(rho).
mod = sm.GLSAR(spector_data.endog, spector_data.exog)
res = mod.fit()
print(res.summary())
def test_sm_GLSAR():
print("Testing SM, GLSAR...")
X, y = iris_data
est = sm.GLS(y, X, rho=2)
mod = est.fit()
docs = {'name': "GLSAR test"}
fv = X[0, :]
upload(mod, fv, docs)
def simple_model(X, Y, type="LR"):
if type == "LR":
simple_model = sm.GLS(Y, X)
elif type == "NN":
simple_model = NN_FF(10, X.shape[1])
else:
raise NotImplementedError("BAD BOI")
return simple_model
def gls_fit(self, X, y, add_const=True):
if add_const:
X_ = sm.add_constant(X)
mod = sm.GLS(y.values, np.asarray(X_))
res = mod.fit()
#print(res.summary())
res = res.get_robustcov_results()
self.reg = res
print(res.summary()) # Robusted Results
def pgls(responseList, predictor, phyCovMatrix, intercept=True):
#predictor = np.array(predictor).T # transpose it to make sure sm doesn't choke
# TODO: should I set an intercept, or no?
# Add a column of 1s at the beginning of exog so the model incorporates an intercept
if intercept:
predictor = np.array([(1, row)
for row in predictor]) # now it is n x 2
# return the model
return sm.GLS(endog=responseList, exog=predictor, sigma=phyCovMatrix)
def test_sm_GLS():
print("Testing SM, GLS...")
data = sm.datasets.longley.load(as_pandas=False)
X = sm.add_constant(data.exog)
est = sm.GLS(data.endog, X, sigma=1)
mod = est.fit()
docs = {'name': "GLS test"}
fv = X[0, :]
upload(mod, fv, docs)
def compare_models(self, smaller_model_list, bigger_model_list):
y = self.dependent_variable[list(self.dependent_variable.keys())[0]]
model_null = sm.GLS(y, smaller_model_list)
model_alternative = sm.GLS(y, bigger_model_list)
params_null = sm.GLS(y, smaller_model_list).fit().params
params_alternative = sm.GLS(y, bigger_model_list).fit().params
null = model_null.loglike(params_null)
alternative = model_alternative.loglike(params_alternative)
self.info_small_model = model_null.fit().summary()
self.info_big_model = model_alternative.fit().summary()
self.rejected = self.llr_test(null, alternative)
return self.rejected, self.info_small_model, self.info_big_model
def linear_regression(self):
"""
Notes
-----
Only the following combinations make sense for family and link ::
+ ident log logit probit cloglog pow opow nbinom loglog logc
Gaussian | x x x
inv Gaussian | x x x
binomial | x x x x x x x x x
Poission | x x x
neg binomial | x x x x
gamma | x x x
Examples
--------
>>> from cost_functions import *
>>> imp = imp = Import('./', 'nyc-condominium-dataset.csv')
>>> df = imp.import_housing_data()
>>> x_var = ['comp_full_market_value', 'comp2_full_market_value', 'gross_sqft']
>>> reg = Regression(df, 'full_market_value', x_var, 2.5, 2.5)
>>> df_final = reg.linear_regression()
>>> cf = CostFunction(df_final, 'full_market_value', 'predicted', 'district', 10, 2.5, 2.5)
>>> cf.all_glm()
"""
df = self.df
y = df[self.y]
#Remove Outliers
ol = y.describe()['mean'] - self.std_ol * y.describe()['std']
oh = y.describe()['mean'] + self.std_oh * y.describe()['std']
df = df[(df[self.y] > ol) & (df[self.y] < oh)]
#Remove missing values
df = df[(df['comp2_full_market_value'] > 0)
& (df['comp_full_market_value'] > 0) &
(df['full_market_value'] > 0)
& (df[self.y] > ol) & (df[self.y] < oh)]
df = df.reset_index(drop=True)
y = df[self.y]
#y.describe()
x = sm.add_constant(df[self.x])
#x.describe()
#model = sm.GLM(Y, X, family = sm.families.Binomial())
#model = sm.GLM(y, x, family=sm.families.Gaussian())
#Note: GLS returns same results as GLM where you set const=1 and family=sm.families.Gaussian()
m2 = sm.GLS(y, x)
r2 = m2.fit()
df_predicted = pd.DataFrame(r2.predict(), columns=['predicted'])
df_final = df.combine_first(df_predicted)
print r2.summary()
return df_final
def refresh(self, X, Y):
X, Y = self._prepare_data_for_fit(X, Y)
ols_resid = sm.OLS(Y, X).fit().resid # rezidua OLS
res_fit = sm.OLS(ols_resid[1:], ols_resid[:-1]).fit() # vypocet korelace mezi rezidui
rho = res_fit.params # autoregresni parametr
order = toeplitz(np.arange(len(ols_resid))) # some magic
sigma = rho ** order
self._model = sm.GLS(Y, X, sigma=sigma).fit()
def regr_gls_sm(y: Union[np.ndarray, pd.DataFrame],
x: Union[np.ndarray, pd.DataFrame], **param):
''' Use:
'''
# X = np.column_stack( (np.ones(N), x**2) ) # ones at beg, BUT need length
# if str(type(x)) == "<class 'numpy.ndarray'>" or type(x) is pd.core.frame.DataFrame:
if type(x) == np.ndarray or type(x) is pd.DataFrame:
X = sm.add_constant(x)
else:
X = np.array(x).T
X = sm.add_constant(X)
if not str(type(
y)) == "<class 'numpy.ndarray'>" or not type(y) is pd.DataFrame:
y = np.array(y)
model = sm.OLS(y, X)
fit_ols = model.fit()
# fit_ols = strat['model'][eqn_f]['fit_model']
# y, X = strat['model'][eqn_f]['df_train_filter'].iloc[:,0], strat['model'][eqn_f]['df_train_filter'].iloc[:,1:]
ols_resid = fit_ols.resid
ols_resid = ols_resid.to_numpy()
resid_fit = sm.OLS(ols_resid[1:], sm.add_constant(ols_resid[:-1])).fit()
# print(resid_fit.tvalues[1])
# print(resid_fit.pvalues[1])
rho = resid_fit.params[1]
order = toeplitz(range(len(ols_resid)))
# so that our error covariance structure is actually rho**order which defines an autocorrelation structure
sigma = rho**order
model_gls = sm.GLS(y, X, sigma=sigma)
fit_gls = model_gls.fit()
model_glsar = sm.GLSAR(y, X, 1)
fit_glsar = model_glsar.iterative_fit(1)
# print(strat['model'][eqn_f]['fit_model'].summary())
# print(gls_results.summary())
# print(glsar_results.summary())
# strat['model'][eqn_f]['fit_gls'] = gls_results
# strat['model'][eqn_f]['fit_glsar'] = glsar_results
#
# print(gls_results.params)
# print(glsar_results.params)
# print(gls_results.bse)
# print(glsar_results.bse)
return fit_gls, fit_glsar
"""
def __init__(self, data, normalize=False, t_value_threshold=2.3, **kwargs):
# call parent function.
RegressionModel.__init__(self, data, normalize=normalize, **kwargs)
# placeholders specific to this class.
self.model = None
self.trained_model = None
self.t_value_threshold = t_value_threshold
# initialise a statsmodels OLS instance.
self.model = sm.GLS(self.train_y, self.train_x)
def GLS(Y, X, e, r):
res_fit = sm1.OLS(e[1:], e[:-1]).fit()
rho = res_fit.params
order = toeplitz(np.arange(len(X)))
sigma = rho**order
gls_model = sm1.GLS(Y, X, sigma=sigma)
gls_results = gls_model.fit()
print(gls_results.summary())
E = gls_results.resid
return E
def do_gls(y, X, covariance_matrix):
'''
generalized least squares using the est_covariance
input: data, estimated covariance matrix
output: result, coeff param, residual
'''
gls_mod = sm.GLS(endog=y, exog=X, sigma=covariance_matrix)
gls_res = gls_mod.fit()
residual = gls_res.resid
return gls_res, residual
def LinearRegressionPrediction(mat, minidx, linlag):
# load dataset
n = len(mat);
m = len(mat[0]);
#calculate "latest range"
startidx = max(minidx - linlag, 0); #???
slopes = np.array([0.0] * m);
slopes2 = np.array([0.0] * m);
intercepts = np.array([0.0] * m);
for i in range(0, m): # per column
ts = mat[:, i];
use_SM = False;
slope = 0.0;
intercept = 0.0;
if use_SM:
model = sm.GLS(np.array(ts[startidx:minidx]), range(startidx, minidx));
model_fit = model.fit();
slope = model_fit.params[0];
intercept = model_fit.scale;
else:
model = scistat.linregress(np.array(range(startidx, minidx)), ts[startidx:minidx]);
slope = model.slope;
intercept = model.intercept;
#end if
slopes[i] = slope;
intercepts[i] = intercept;
slope = slope * 1.1;
adjust_intercept = ts[minidx - 1] - ((minidx - 1) * slope + intercept);
intercept = intercept + adjust_intercept;
#prediction
for j in range(minidx, n):
if (j != minidx) and (((j - minidx) % 8) == 0):
slope *= 0.85;
adjust_intercept = ts[j - 1] - ((j - 1) * slope + intercept); # intercept depends on the slope for continuity of prediction
intercept = intercept + adjust_intercept; # so it has to be re-adjusted if slope is changed
#end if
ts[j] = (j * slope) + intercept;
#end for
slopes2[i] = slope;
mat[:, i] = ts;
#end for
#np.savetxt("/home/zakhar/ReVival/UDF/py_predict/test.txt", np.array([slopes, slopes2, intercepts]));
return mat;
def gls_model():
# Generalized Least Squares (GLS)
data = get_dataset("longley")
data.exog = sm.add_constant(data.exog)
ols_resid = sm.OLS(data.endog, data.exog).fit().resid
res_fit = sm.OLS(ols_resid[1:], ols_resid[:-1]).fit()
rho = res_fit.params
order = toeplitz(np.arange(16))
sigma = rho**order
gls = sm.GLS(data.endog, data.exog, sigma=sigma)
model = gls.fit()
return ModelWithResults(model=model, alg=gls, inference_dataframe=data.exog)
def solve_GLS(X=None, y=None, sigma=None):
"""
Solve a multiple linear problem using statsmodels GLS
"""
goForGLS = X.copy()
regr = sm.GLS(y, goForGLS, sigma=sigma).fit()
while True:
regr = sm.GLS(y, goForGLS, sigma=sigma).fit()
# if (regr.pvalues > 0.05).any():
if (regr.params < 0).any():
# Some variable are 0, drop them.
# goForGLS.drop(goForGLS.columns[regr.pvalues>0.05],axis=1,inplace=True)
# goForGLS.drop(goForGLS.columns[regr.pvalues == max(regr.pvalues)],axis=1,inplace=True)
goForGLS.drop(goForGLS.columns[regr.params == min(regr.params)],axis=1,inplace=True)
else:
# Ok, the run converged
break
if goForGLS.shape[1]==0:
# All variable were droped... Pb
print("Warning: The run did not converge...")
break
# print(regr.summary())
return regr
def getReturn(self):
self._y = np.append(self._pi, self._q)
self._V = np.zeros((self._gammaSigma.shape[0] + self._Omega.shape[0],
self._gammaSigma.shape[0] + self._Omega.shape[0]))
self._V[:self._gammaSigma.shape[0], :self._gammaSigma.
shape[0]] += self._gammaSigma
self._V[self._gammaSigma.shape[0]:,
self._gammaSigma.shape[0]:] += self._Omega
self._X = np.vstack([np.identity(self._N), self._P])
# Below is the statsmodels GLS implementation
import statsmodels.api as sm
self._fit = sm.GLS(self._y, self._X, sigma=self._V).fit()
self._ret = self._fit.params
def test_fast_scanner_statsmodel_gls():
import statsmodels.api as sm
from numpy.linalg import lstsq
def _lstsq(A, B):
return lstsq(A, B, rcond=None)[0]
data = sm.datasets.longley.load()
data.exog = sm.add_constant(data.exog)
ols_resid = sm.OLS(data.endog, data.exog).fit().resid
resid_fit = sm.OLS(ols_resid[1:], sm.add_constant(ols_resid[:-1])).fit()
rho = resid_fit.params[1]
order = toeplitz(range(len(ols_resid)))
sigma = rho ** order
QS = economic_qs(sigma)
lmm = LMM(data.endog, data.exog, QS)
lmm.fit(verbose=False)
sigma = lmm.covariance()
scanner = lmm.get_fast_scanner()
best_beta_se = _lstsq(data.exog.T @ _lstsq(lmm.covariance(), data.exog), eye(7))
best_beta_se = sqrt(best_beta_se.diagonal())
assert_allclose(scanner.null_beta_se, best_beta_se, atol=1e-5)
endog = data.endog.copy()
endog -= endog.mean(0)
endog /= endog.std(0)
exog = data.exog.copy()
exog -= exog.mean(0)
with errstate(invalid="ignore", divide="ignore"):
exog /= exog.std(0)
exog[:, 0] = 1
lmm = LMM(endog, exog, QS)
lmm.fit(verbose=False)
sigma = lmm.covariance()
scanner = lmm.get_fast_scanner()
gls_model = sm.GLS(endog, exog, sigma=sigma)
gls_results = gls_model.fit()
beta_se = gls_results.bse
our_beta_se = sqrt(scanner.null_beta_covariance.diagonal())
# statsmodels scales the covariance matrix we pass, that is why
# we need to account for it here.
assert_allclose(our_beta_se, beta_se / sqrt(gls_results.scale))
assert_allclose(scanner.null_beta_se, beta_se / sqrt(gls_results.scale))
def best_model_in_the_class(self, combinations):
helper_dict = {}
helper_list = []
combinations_dict = {}
y = self.dependent_variable[list(self.dependent_variable.keys())[0]]
#r_squared = {i: [] for i in range(0, len(combinations))}
aic_coef = {i: [] for i in range(0, len(combinations))}
for i in range(0, len(combinations)):
combinations_dict[i] = combinations[i]
#create weights
#create proper data for Linear Regression
for key in combinations_dict.keys():
for i in range(0, len(self.dict_data['Intel'])):
for item in combinations_dict[key]:
helper_dict[i] = [
v[i] for k, v in self.dict_data.items()
if k in combinations_dict[key]
]
helper_list = [
value for key, value in sorted(helper_dict.items())
]
model = sm.GLS(y, helper_list)
regression = model.fit()
aic = regression.aic
aic_coef[key].append(aic)
#r = regression.rsquared
#r_squared[key].append(r)
#map the results into final
# determination_combination_dict = {}
# for k1 in combinations_dict.keys():
# for k2 in r_squared.keys():
# if k1 == k2:
# determination_combination_dict[float(r_squared[k2][0])] = list(combinations_dict[k1])
aic_combinations_dict = {}
for k1 in combinations_dict.keys():
for k2 in aic_coef.keys():
if k1 == k2:
aic_combinations_dict[float(aic_coef[k2][0])] = list(
combinations_dict[k1])
best_aic = min(aic_combinations_dict.keys())
self.best_model_in_class = aic_combinations_dict[best_aic]
#choose the best model among the class
# best_r = max(determination_combination_dict.keys())
#self.best_model_in_class = determination_combination_dict[best_r]
return self.best_model_in_class
def reg_m(y, x, estimator, weights=None):
ones = np.ones(len(x[0]))
X = sm.add_constant(np.column_stack((x[0], ones)))
for ele in x[1:]:
X = sm.add_constant(np.column_stack((ele, X)))
if estimator == 'ols':
return sm.OLS(y, X).fit()
elif estimator == 'wls':
return sm.WLS(y, X, weights).fit()
elif estimator == 'gls':
return sm.GLS(y, X).fit()
return None
def SPGLS(context):
# 从 Context 中获取相关数据
args = context.args
# 查看上一节点发送的 args.inputData 数据
df = args.inputData
featureColumns = args.featureColumns
labelColumn = args.labelColumn
features = df[featureColumns].values
label = df[labelColumn].values
arma_mod = sm.GLS(label, features, missing=args.missing)
arma_res = arma_mod.fit(method=args.method)
return arma_res
def getReward(self):
"""Computes the metric for our reward"""
# pdb.set_trace()
X = self.X.T[self.features[0]].T
if X.shape[1] == 0:
return 0
results = sm.GLS(self.Y, X).fit()
# estimated weights
# w_linalg = np.dot(np.dot(np.linalg.inv(np.dot(self.X.T[self.features[0]], self.X.T[self.features[0]].T)), self.X.T[self.features[0]]), self.Y)
# # estimate R^2
# R_sqred = np.square(np.dot(self.X.T[self.features[0]].T, w_linalg) - np.mean(self.Y)).sum(axis=0) / np.square(self.Y - np.mean(self.Y)).sum(axis=0)
#
# # estimated adjusted R^2
# adj_R_squard = 1 - (1 - R_sqred**2)*(self.X.shape[0] -1) / (self.X.shape[0] -len(self.features[0])-1)
return results.rsquared_adj
def calibrate(volume_duration, strikes, reps):
volume_duration = volume_duration.unstack(['Half-spread', 'Strike'])
arrival_rate = volume_duration.groupby('Class').apply(
lambda c: compute_arrival_rate(c.loc[c.name, 'Volume'], c.loc[
c.name, 'Duration'], strikes[c.name]))
arrival_rate.name = 'Arrival rate'
arrival_rate.index = arrival_rate.index.reorder_levels(
['Class', 'Strike', 'Half-spread'])
sbs = volume_duration.groupby('Class').apply(lambda c: StationaryBootstrap(
25, volume=c.loc[c.name, 'Volume'], duration=c.loc[c.name, 'Duration'])
)
conf_int = sbs.groupby('Class').apply(lambda c: pd.DataFrame(
c[c.name].conf_int(lambda volume, duration: compute_arrival_rate(
volume, duration, strikes[c.name]),
reps=reps), ['2.5%', '97.5%'], arrival_rate.loc[
c.name].index))
conf_int = conf_int.T.stack('Class')
conf_int.index = conf_int.index.reorder_levels(
['Class', 'Strike', 'Half-spread'])
sigma = sbs.groupby('Class').apply(lambda c: pd.DataFrame(
c[c.name].cov(lambda volume, duration: compute_arrival_rate(
volume, duration, strikes[c.name]),
reps=reps), arrival_rate.loc[c.name].index, arrival_rate.
loc[c.name].index))
sigma = sigma.groupby('Strike').apply(
lambda k: k.xs(k.name, level='Strike', axis=1))
sigma.dropna(how='all', inplace=True)
gls = arrival_rate.loc[sigma.index].groupby(
['Class', 'Strike']).apply(lambda k: sm.GLS(
k.values,
sm.add_constant(k.index.get_level_values('Half-spread')),
sigma=sigma.xs(k.name, level=['Class', 'Strike']).dropna(axis=1)).
fit())
params = gls.apply(lambda g: pd.Series([np.exp(g.params[0]), -g.params[1]],
['A', '$\\kappa$']))
base_conf_int = gls.apply(lambda g: pd.Series(
np.exp(g.conf_int(alpha=.1)[0]), ['A 5%', 'A 95%']))
decay_conf_int = gls.apply(lambda g: pd.Series(
-g.conf_int(alpha=.1)[1, ::-1], ['$\\kappa$ 5%', '$\\kappa$ 95%']))
params = pd.concat([params, base_conf_int, decay_conf_int], axis=1)
arrival_rate = np.exp(pd.concat([arrival_rate, conf_int], axis=1))
return arrival_rate, params
def gls(data, xseq, **params):
"""
Fit GLS
"""
X = sm.add_constant(data['x'])
Xseq = sm.add_constant(xseq)
results = sm.GLS(data['y'], X).fit(**params['method_args'])
data = pd.DataFrame({'x': xseq})
data['y'] = results.predict(Xseq)
if params['se']:
alpha = 1 - params['level']
prstd, iv_l, iv_u = wls_prediction_std(results, Xseq, alpha=alpha)
data['se'] = prstd
data['ymin'] = iv_l
data['ymax'] = iv_u
return data
def LL(X, Y, Xs, Ys, error):
n = len(X)
h = 0.1
mean_of_error = np.zeros((len(Xs), len(Ys)))
for i in range(len(Xs)):
for j in range(len(Ys)):
u1 = ((X - Xs[i]) / h)**2
u2 = ((Y - Ys[j]) / h)**2
k = (0.9375 *
(1 - ((X - Xs[i]) / h)**2)**2) * (0.9375 *
(1 -
((Y - Ys[j]) / h)**2)**2)
K = np.diag(k)
indep = np.matrix(np.array([np.ones(n), X - Xs[i], Y - Ys[j]]).T)
dep = np.matrix(np.array([error]).T)
gls_model = sm.GLS(dep, indep, sigma=K)
gls_results = gls_model.fit()
mean_of_error[i, j] = gls_results.params[0]
return mean_of_error
