def from_uvfits (fitsfile,msname="$MS"):
"""Converts UVFITS file into MS""";
fitsfile,msname = interpolate_locals("fitsfile msname");
if not msname:
msname = fitsfile+".MS";
std.runcasapy("""ms.fromfits(msfile='$msname',fitsfile='$fitsfile')""");
verify_antpos(msname,fix=True);
def from_uvfits(fitsfile, msname="$MS"):
"""Converts UVFITS file into MS"""
fitsfile, msname = interpolate_locals("fitsfile msname")
if not msname:
msname = fitsfile + ".MS"
std.runcasapy("""ms.fromfits(msfile='$msname',fitsfile='$fitsfile')""")
verify_antpos(msname, fix=True)
def fits2casa (input,output):
"""Converts FITS image to CASA image."""
if exists(output):
rm_fr(output)
if not exists(input):
abort("$input does not exist")
std.runcasapy("importfits('$input','$output',overwrite=True)")
def split_rebin(msname="$MS",
output="$MSOUT",
chan=None,
time=None,
field=None,
spw=None,
column="DATA"):
"""Splits and/or resamples MS in frequency with the given channel stepping size, and/or in time
with the give time bin size (e.g. '5s'), and/or breaks out the specified fields and spws"""
msname, output = interpolate_locals("msname output")
args = ""
def list2str(arg):
return ",".join(map(str, stg)) if isinstance(arg,
(list,
tuple)) else str(arg)
if chan:
args += II(",width=[$chan]")
if time:
args += II(",timebin='$time'")
if field:
args += II(",field='%s'" % list2str(field))
if spw:
args += II(",spw='%s'" % list2str(spw))
column = column.lower()
std.runcasapy(
"""split(vis='$msname',outputvis='$output',datacolumn='$column'$args);"""
)
def virtconcat(output="concat.MS", thorough=False, subtables=False):
"""Virtually concatenates the MSs given by MS_List into an output MS."""
output, options = interpolate_locals("output options")
auxfile = II("${output}.dat")
if not v.MS_List:
abort("MS_List must be set before calling ms.virtconcat()")
if len(v.MS_List) != len(set([os.path.basename(x) for x in v.MS_List])):
abort(
"ms.virtconcat: MSs to be concatenated need to have unique basenames. Please rename your MSs accordingly."
)
cmd = ""
if thorough:
cmd = """ms.open("%s", nomodify=False)\n""" % v.MS_List[0]
for msl in v.MS_List[1:]:
cmd += II(
"""ms.virtconcatenate("$msl","$auxfile",'1GHz','1arcsec')\n""")
cmd += II("""ms.close()\nos.remove('$auxfile')\n""")
cmd += """if not ms.createmultims('$output',["%s"],
[],
True, # nomodify
False,# lock
$subtables): # copysubtables from first to all other members
os._exit(1);
ms.close();
""" % '","'.join(v.MS_List)
std.runcasapy(cmd)
info("virtually concatenated %d inputs MSs into $output" % len(v.MS_List))
def fixuvw (msname="$MS",fix=True,rowstep=100000):
"""Fixes the UVW column of an MS by recomputing it from scratch. If fix=False, only prints differences with current
UVW column at every rowstep-th row"""
# these are parameters for the CASA script given by
msname = interpolate_locals("msname");
write_uvw = fix;
std.runcasapy(_utils.casa_scripts.fixuvw_casa,content="_utils.casa_scripts.fixuvw_casa");
if fix:
info("updated UVWs have been written to $msname");
else:
info("fix=False, updated UVWs not written out");
def fixuvw(msname="$MS", fix=True, rowstep=100000):
"""Fixes the UVW column of an MS by recomputing it from scratch. If fix=False, only prints differences with current
UVW column at every rowstep-th row"""
# these are parameters for the CASA script given by
msname = interpolate_locals("msname")
write_uvw = fix
std.runcasapy(_utils.casa_scripts.fixuvw_casa,
content="_utils.casa_scripts.fixuvw_casa")
if fix:
info("updated UVWs have been written to $msname")
else:
info("fix=False, updated UVWs not written out")
def concat (output="concat.MS",thorough=False,subtables=False,freqtol='1MHz',dirtol='1arcsec'):
"""Concatenates the MSs given by MS_List into an output MS."""
output,freqtol,dirtol = interpolate_locals("output freqtol dirtol");
info("concatenating",v.MS_List,"into $output");
if not v.MS_List:
abort("MS_List must be set before calling ms.concat()");
if len(v.MS_List) != len(set([os.path.basename(name) for name in v.MS_List])):
abort("ms.virtconcat: MSs to be concatenated need to have unique basenames. Please rename your MSs accordingly.");
x.sh("cp -a "+v.MS_List[0]+" "+output);
cmd = """ms.open("%s", nomodify=False)\n"""%output;
for msl in v.MS_List[1:]:
cmd += II("""ms.concatenate("$msl",freqtol='$freqtol',dirtol='$dirtol')\n""");
cmd += II("""ms.close()\n""");
std.runcasapy(cmd);
info("concatenated %d inputs MSs into $output"%len(v.MS_List));
def split_rebin (msname="$MS",output="$MSOUT",chan=None,time=None,field=None,spw=None,column="DATA"):
"""Splits and/or resamples MS in frequency with the given channel stepping size, and/or in time
with the give time bin size (e.g. '5s'), and/or breaks out the specified fields and spws""";
msname,output = interpolate_locals("msname output");
args = ""
def list2str (arg):
return ",".join(map(str,stg)) if isinstance(arg,(list,tuple)) else str(arg);
if chan:
args += II(",width=[$chan]");
if time:
args += II(",timebin='$time'");
if field:
args += II(",field='%s'"%list2str(field));
if spw:
args += II(",spw='%s'"%list2str(spw));
column = column.lower();
std.runcasapy("""split(vis='$msname',outputvis='$output',datacolumn='$column'$args);""");
def concat(output="concat.MS",
thorough=False,
subtables=False,
freqtol='1MHz',
dirtol='1arcsec'):
"""Concatenates the MSs given by MS_List into an output MS."""
output, freqtol, dirtol = interpolate_locals("output freqtol dirtol")
info("concatenating", v.MS_List, "into $output")
if not v.MS_List:
abort("MS_List must be set before calling ms.concat()")
if len(v.MS_List) != len(
set([os.path.basename(name) for name in v.MS_List])):
abort(
"ms.virtconcat: MSs to be concatenated need to have unique basenames. Please rename your MSs accordingly."
)
x.sh("cp -a " + v.MS_List[0] + " " + output)
cmd = """ms.open("%s", nomodify=False)\n""" % output
for msl in v.MS_List[1:]:
cmd += II(
"""ms.concatenate("$msl",freqtol='$freqtol',dirtol='$dirtol')\n""")
cmd += II("""ms.close()\n""")
std.runcasapy(cmd)
info("concatenated %d inputs MSs into $output" % len(v.MS_List))
def virtconcat (output="concat.MS",thorough=False,subtables=False):
"""Virtually concatenates the MSs given by MS_List into an output MS."""
output,options = interpolate_locals("output options");
auxfile = II("${output}.dat");
if not v.MS_List:
abort("MS_List must be set before calling ms.virtconcat()");
if len(v.MS_List) != len(set([os.path.basename(x) for x in v.MS_List])):
abort("ms.virtconcat: MSs to be concatenated need to have unique basenames. Please rename your MSs accordingly.");
cmd = "";
if thorough:
cmd = """ms.open("%s", nomodify=False)\n"""%v.MS_List[0];
for msl in v.MS_List[1:]:
cmd += II("""ms.virtconcatenate("$msl","$auxfile",'1GHz','1arcsec')\n""");
cmd += II("""ms.close()\nos.remove('$auxfile')\n""");
cmd += """if not ms.createmultims('$output',["%s"],
[],
True, # nomodify
False,# lock
$subtables): # copysubtables from first to all other members
os._exit(1);
ms.close();
"""%'","'.join(v.MS_List);
std.runcasapy(cmd);
info("virtually concatenated %d inputs MSs into $output"%len(v.MS_List));
def summary (msname="$MS"):
msname = interpolate_locals("msname");
std.runcasapy("listobs('$msname')");
def summary(msname="$MS"):
msname = interpolate_locals("msname")
std.runcasapy("listobs('$msname')")
def rebin_freq (msname="$MS",output="$MSOUT",step=1):
"""Resamples MS in frequency with the given step size""";
msname,output = interpolate_locals("msname output");
std.runcasapy("""ms.open("$msname"); ms.split(outputms='$output',step=$step);""");
def from_uvfits (fitsfile,msname="$MS"):
fitsfile,msname = interpolate_locals("fitsfile msname");
if not msname:
msname = fitsfile+".MS";
std.runcasapy("""ms.fromfits(msfile='$msname',fitsfile='$fitsfile')""");