Example #1
0
def voronoiAnalysis(bin_file, density_factor, output_directory, min_size=30):

    # save a record of the clustering parameters.
    bin_dir = os.path.dirname(bin_file)
    if (len(bin_dir) == 0):
        bin_dir = "."

    with open(bin_dir + "/voroni.txt", "w") as fp:
        fp.write("density factor = " + str(density_factor) + "\n")
        fp.write("min_size = " + str(min_size) + "\n")

    cl_bin_file = output_directory + os.path.basename(
        bin_file)[:-8] + "srt_list.bin"

    # find clusters
    if True:
        voronoi.voronoi(bin_file, cl_bin_file, density_factor, min_size)

    # cluster stats
    if True:
        clusterStats.clusterStats(cl_bin_file, min_size - 1)

    # cluster size
    if True:
        clusterSize.clusterSize(cl_bin_file,
                                cl_bin_file[:-8] + "size_list.bin")
Example #2
0
def dbscanAnalysis(bin_file, channel, eps = 40, mc = 10, min_size = 50):

    # save a record of the clustering parameters.
    bin_dir = os.path.dirname(bin_file)
    if (len(bin_dir) == 0):
        bin_dir = "."
    
    with open(bin_dir + "/dbscan.txt", "w") as fp:
        fp.write("eps = " + str(eps) + "\n")
        fp.write("mc = " + str(mc) + "\n")
        fp.write("min_size = " + str(min_size) + "\n")

    cl_bin_file = bin_file[:-8] + "clusters_list.bin"

    # find clusters
    if True:
        findClusters.findClusters(bin_file, cl_bin_file, eps, mc)

    # cluster stats
    if True:
        clusterStats.clusterStats(cl_bin_file, min_size - 1)

    # cluster size
    if True:
        clusterSize.clusterSize(cl_bin_file, cl_bin_file[:-8] + "size_list.bin")
Example #3
0
def voronoiAnalysis(bin_file, density_factor, output_directory, min_size = 30):

    # save a record of the clustering parameters.    
    bin_dir = os.path.dirname(bin_file)
    if (len(bin_dir) == 0):
        bin_dir = "."
    
    with open(bin_dir + "/voroni.txt", "w") as fp:
        fp.write("density factor = " + str(density_factor) + "\n")
        fp.write("min_size = " + str(min_size) + "\n")


    cl_bin_file = output_directory + os.path.basename(bin_file)[:-8] + "srt_list.bin"

    # find clusters
    if True:
        voronoi.voronoi(bin_file, cl_bin_file, density_factor, min_size)

    # cluster stats
    if True:
        clusterStats.clusterStats(cl_bin_file, min_size - 1)

    # cluster size
    if True:
        clusterSize.clusterSize(cl_bin_file, cl_bin_file[:-8] + "size_list.bin")
Example #4
0
def dbscanAnalysis(bin_file, channel, eps=40, mc=10, min_size=50):

    # save a record of the clustering parameters.
    bin_dir = os.path.dirname(bin_file)
    if (len(bin_dir) == 0):
        bin_dir = "."

    with open(bin_dir + "/dbscan.txt", "w") as fp:
        fp.write("eps = " + str(eps) + "\n")
        fp.write("mc = " + str(mc) + "\n")
        fp.write("min_size = " + str(min_size) + "\n")

    cl_bin_file = bin_file[:-8] + "clusters_list.bin"

    # find clusters
    if True:
        findClusters.findClusters(bin_file, cl_bin_file, eps, mc)

    # cluster stats
    if True:
        clusterStats.clusterStats(cl_bin_file, min_size - 1)

    # cluster size
    if True:
        clusterSize.clusterSize(cl_bin_file,
                                cl_bin_file[:-8] + "size_list.bin")