def handle(self, *args, **options):
print("Working on file {}".format(options['pdb_file']))
header = parse_pdb_header(options['pdb_file'])
print(header['compound'])
sp = SequenceParser(options['pdb_file'])
c = list(sp.mapping.keys())[0]
poly = sp.get_chain_peptides(c)
for peptide in poly:
print("Start: {} Stop: {} Len: {}".format(peptide[0].id[1], peptide[-1].id[1], len(peptide)))
sp.map_to_wt_blast(c, peptide, None, int(peptide[0].id[1]))
sp.map_seqres()
sp.save_excel_report("test.xlsx")
#sp.get_report()
