hublib_flag = False
# join_our_list = "(Join/ask questions at https://groups.google.com/forum/#!forum/physicell-users)\n"
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
user_tab = UserTab()
svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
return
tab_layout = widgets.Layout(
width='950px', # border='2px solid black',
height=tab_height,
overflow_y='scroll',
)
# create the tabs, but don't display yet
config_tab = ConfigTab()
cells = CellsTab()
tree = ET.parse('data/nanobio_settings.xml'
) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
nanopart = NanoTab(xml_root)
svg = SVGTab()
sub = SubstrateTab()
mydata = DataTab()
def read_config_file_cb(_b):
print("read_config_file")
dirname = os.path.expanduser('~/.local/share/pc4nanobio')
config_file = os.path.join(dirname, read_config_file.value)
fill_gui_params(config_file)
def write_config_file_cb(b):
# print('writing config', b)
# Read in the default xml config file, just to get a valid 'root' to populate a new one
overflow_y='scroll',
)
# create the tabs, but don't display yet
config_tab = ConfigTab()
#cells = CellsTab()
user_tab = UserTab()
#full_filename = os.path.abspath('../config/PhysiCell_settings.xml')
full_xml_filename = os.path.abspath('myconfig.xml')
#print('full_xml_filename=',full_xml_filename)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
svg = SVGTab()
sub = SubstrateTab()
#nanoHUB_flag = "home/nanohub" in os.environ['HOME'] # True/False (running on nanoHUB or not)
nanoHUB_flag = False
def read_config_cb(_b):
with debug_view:
print("read_config", read_config.value)
# e.g. "DEFAULT" -> read_config /Users/heiland/dev/pc4nanobio/data/nanobio_settings.xml
# "<time-stamp>" -> read_config /Users/heiland/.cache/pc4nanobio/pc4nanobio/59c60c0a402e4089b71b140689075f0b
# "t360.xml" -> read_config /Users/heiland/.local/share/pc4nanobio/t360.xml
if read_config.value is None: #rwh: happens when a Run just finishes and we update pulldown with the new cache dir??
return
# create the tabs, but don't display yet
config_tab = ConfigTab()
#full_filename = os.path.abspath('data/PhysiCell_settings.xml')
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
user_tab = UserTab()
svg = SVGTab(nanoHUB_flag)
sub = SubstrateTab(nanoHUB_flag)
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
return
if os.path.isdir(read_config.value):
is_dir = True
config_file = os.path.join(read_config.value, 'config.xml')