def run():
timings = {}
for testName in [
"mei", "inv", "ins_moleculo", "ins_pacbio", "del_chr1",
"translocation"
]:
print(">", testName, "<")
exportPath = "renderTests/export_{}_new.svg".format(testName)
originalPath = "renderTests/export_{}_original.svg".format(testName)
d = gzip.open("renderTests/{}.pickle.gz".format(testName), "rb")
try:
dataHub = pickle.load(d, encoding="latin1")
except TypeError:
dataHub = pickle.load(d)
dataHub.args = MockArgs()
dataHub.args.thicker_lines = False
dataHub.args.export = exportPath
dataHub.args.context = 0
t0 = time.time()
app.renderSamples(dataHub)
app.ensureExportData(dataHub)
app.runDirectExport(dataHub)
t1 = time.time()
timings[testName] = t1 - t0
no_changes = True
if not os.path.exists(originalPath):
print(" first time running; nothing to compare against")
shutil.copy(exportPath, originalPath)
else:
if filecmp.cmp(originalPath, exportPath, shallow=False):
print(" files identical!")
else:
for a, b in zip(
open(originalPath).readlines(),
open(exportPath).readlines()):
if a != b:
no_changes = (False,
"files differ: {}".format(testName))
print("FILES DIFFER! First line that differs:")
print("Original:", a.strip())
print("New: ", b.strip())
print("...")
time.sleep(3)
utilities.launchFile(exportPath)
utilities.launchFile(originalPath)
break
timingsPath = "renderTests/renderTimings.json.txt"
regenerateTimings = False
try:
oldTimings = json.load(open(timingsPath))
print("{:<20}{:>20}{:>20}".format("Test Name", "Previous", "New"))
for testName in sorted(timings):
try:
remark = "ok"
if timings[testName] > oldTimings[testName] * 1.1:
remark = "** slower! **"
print("{:<20}{:>19.2f}s{:>19.2f}s\t{}".format(
testName, oldTimings[testName], timings[testName], remark))
except KeyError:
print("{:<20}{:>20}s{:>19.2f}s".format(testName, "",
timings[testName]))
regenerateTimings = True
except IOError:
print("unable to load previous timings...")
if not os.path.exists(timingsPath) or regenerateTimings:
print("overwriting previous timings...")
json.dump(timings, open(timingsPath, "w"))
return no_changes, ""
for testName in ["mei", "inv", "ins_moleculo", "ins_pacbio", "del_chr1", "translocation"]:
print ">", testName, "<"
exportPath = "tests/export_{}_new.svg".format(testName)
originalPath = "tests/export_{}_original.svg".format(testName)
dataHub = pickle.load(open("tests/{}.pickle".format(testName)))
dataHub.args = MockArgs()
dataHub.args.thicker_lines = False
dataHub.args.export = exportPath
t0 = time.time()
app.renderSamples(dataHub)
app.ensureExportData(dataHub)
app.runDirectExport(dataHub)
t1 = time.time()
timings[testName] = t1-t0
if not os.path.exists(originalPath):
print " first time running; nothing to compare against"
shutil.copy(exportPath, originalPath)
else:
if filecmp.cmp(originalPath, exportPath, shallow=False):
print " files identical!"
else:
for a, b in zip(open(originalPath).readlines(), open(exportPath).readlines()):
if a != b:
print "FILES DIFFER! First line that differs:"
print "Original:", a.strip()
def run():
timings = {}
for testName in ["mei", "inv", "ins_moleculo", "ins_pacbio", "del_chr1", "translocation"]:
print(">", testName, "<")
exportPath = "renderTests/export_{}_new.svg".format(testName)
originalPath = "renderTests/export_{}_original.svg".format(testName)
d = gzip.open("renderTests/{}.pickle.gz".format(testName), "rb")
try:
dataHub = pickle.load(d, encoding="latin1")
except TypeError:
dataHub = pickle.load(d)
dataHub.args = MockArgs()
dataHub.args.thicker_lines = False
dataHub.args.export = exportPath
dataHub.args.context = 0
t0 = time.time()
app.renderSamples(dataHub)
app.ensureExportData(dataHub)
app.runDirectExport(dataHub)
t1 = time.time()
timings[testName] = t1-t0
no_changes = True
if not os.path.exists(originalPath):
print(" first time running; nothing to compare against")
shutil.copy(exportPath, originalPath)
else:
if filecmp.cmp(originalPath, exportPath, shallow=False):
print(" files identical!")
else:
for a, b in zip(open(originalPath).readlines(), open(exportPath).readlines()):
if a != b:
no_changes = (False, "files differ: {}".format(testName))
print("FILES DIFFER! First line that differs:")
print("Original:", a.strip())
print("New: ", b.strip())
print("...")
time.sleep(3)
utilities.launchFile(exportPath)
utilities.launchFile(originalPath)
break
timingsPath = "renderTests/renderTimings.json.txt"
regenerateTimings = False
try:
oldTimings = json.load(open(timingsPath))
print("{:<20}{:>20}{:>20}".format("Test Name", "Previous", "New"))
for testName in sorted(timings):
try:
remark = "ok"
if timings[testName] > oldTimings[testName] * 1.1:
remark = "** slower! **"
print("{:<20}{:>19.2f}s{:>19.2f}s\t{}".format(testName, oldTimings[testName], timings[testName], remark))
except KeyError:
print("{:<20}{:>20}s{:>19.2f}s".format(testName, "", timings[testName]))
regenerateTimings = True
except IOError:
print("unable to load previous timings...")
if not os.path.exists(timingsPath) or regenerateTimings:
print("overwriting previous timings...")
json.dump(timings, open(timingsPath, "w"))
return no_changes, ""
"mei", "inv", "ins_moleculo", "ins_pacbio", "del_chr1", "translocation"
]:
print ">", testName, "<"
exportPath = "tests/export_{}_new.svg".format(testName)
originalPath = "tests/export_{}_original.svg".format(testName)
dataHub = pickle.load(open("tests/{}.pickle".format(testName)))
dataHub.args = MockArgs()
dataHub.args.thicker_lines = False
dataHub.args.export = exportPath
t0 = time.time()
app.renderSamples(dataHub)
app.ensureExportData(dataHub)
app.runDirectExport(dataHub)
t1 = time.time()
timings[testName] = t1 - t0
if not os.path.exists(originalPath):
print " first time running; nothing to compare against"
shutil.copy(exportPath, originalPath)
else:
if filecmp.cmp(originalPath, exportPath, shallow=False):
print " files identical!"
else:
for a, b in zip(
open(originalPath).readlines(),
open(exportPath).readlines()):
if a != b:
