def testParser3():
logging.basicConfig(level=logging.DEBUG,
format='%(asctime)s %(levelname)s %(message)s',
datefmt='%d%b%Y %H:%M:%S')
p = Parser()
portionlist = ["ncwa in.nc temp.nc", "ncwa temp.nc temp.nc",
"ncwa temp.nc out.nc"]
portion = "\n".join(portionlist)
cf = CommandFactory(Config.dummyConfig())
p.parseScript(portion, cf)
def testParser2():
logging.basicConfig(level=logging.DEBUG,
format='%(asctime)s %(levelname)s %(message)s',
datefmt='%d%b%Y %H:%M:%S')
wholelist = open("full_resamp.swamp").readlines()
test = [ "".join(wholelist[:10]),
"".join(wholelist[:400]),
"".join(wholelist),
testScript4]
p = Parser()
cf = CommandFactory(Config.dummyConfig())
p.parseScript(test[1], cf)
def testParser():
test1 = """#!/usr/local/bin/bash
# Analysis script for CAM/CLM output.
#export CASEID1=camsomBC_1998d11
ncwa in.nc out.nc
CASEID1=$1
DATA=nothing
export ANLDIR=${DATA}/anl_${CASEID1}
export STB_YR=00
export FRST_YR=0000
export LAST_YR=0014
export MDL=clm2
let Y1=$FRST_YR+1
let Y9=1
let Y9=1+1
mkdir -p ${ANLDIR} #inline comment
mkdir -p ${DATA}/${CASEID1}/tmp
# Move /tmp files into original directories (strictly precautionary):
mv ${DATA}/${CASEID1}/tmp/* ${DATA}/${CASEID1}/
# Move data from year 0 out of the way
mv ${DATA}/${CASEID1}/${CASEID1}.${MDL}.h0.${FRST_YR}-??.nc ${DATA}/${CASEID1}/tmp/
# STEP 1: Create ensemble annual and seasonal means
# Bring in December of year 0 for seasonal mean
mv ${DATA}/${CASEID1}/tmp/${CASEID1}.${MDL}.h0.${FRST_YR}-12.nc ${DATA}/${CASEID1}/
for yr in `seq $Y1 $LAST_YR`; do
YY=`printf "%04d" ${yr}`
let yrm=yr-1
YM=`printf "%04d" ${yrm}`
ncrcat -O ${DATA}/${CASEID1}/${CASEID1}.${MDL}.h0.${YM}-12.nc ${DATA}/${CASEID1}/${CASEID1}.${MDL}.h0.${YY}-??.nc ${ANLDIR}/foo2.nc
"""
logging.basicConfig(level=logging.DEBUG,
format='%(asctime)s %(levelname)s %(message)s',
datefmt='%d%b%Y %H:%M:%S')
# filename='/tmp/myapp.log',
# filemode='w')
p = Parser()
p.parseScript(test1, None)
class SwampTask:
"""Contains objects necessary to manage *ONE* script's running context"""
def __init__(self, remote, config, script, outMap,
customizer=lambda p,s,cf: True):
"""
remote -- a list of executors where jobs can be sent.
config -- a configuration object, e.g. the global config object
script -- the script to be executed
outMap -- a filemap object to be used to map between logical and
physical filenames
customizer -- a function accepting a parser instance, scheduler
instance, and a command factory instance. This function will be
called after construction (but before parsing) to apply any
customization desired or necessary for an environment.
"""
self.config = config
self.parser = Parser()
self.scheduler = Scheduler(config, self._publishIfOutput)
self.parser.commandHandler(self.scheduler.schedule)
self._commandFactory = CommandFactory(self.config)
self.buildTime = time.time()
self.fail = None
if not customizer(self.parser,
self.scheduler,
self._commandFactory):
self.fail = "Error applying frontend customization."
return
self.remoteExec = remote
self.outMap = LinkedMap(outMap, self.taskId())
self._publishedFiles = []
self.stat = statistics.tracker().scriptStart((self.taskId(), script, self))
if True: # set to False to profile the parse step
self._parseScript(script)
self.stat.markParseFinish()
return
try:
pobject = profile.Profile()
presult = pobject.runctx('self._parseScript(script)', globals(),locals())
presult.dump_stats("/home/wangd/parse.pyprofile")
except StandardError, e:
self.fail = str((e,e.__doc__, str(e)))
raise e
self.stat.markParseFinish()
pass
