def run_tardis(
config,
atom_data=None,
packet_source=None,
simulation_callbacks=[],
virtual_packet_logging=False,
):
"""
This function is one of the core functions to run TARDIS from a given
config object.
It will return a model object containing
Parameters
----------
config : str or dict or tardis.io.config_reader.Configuration
filename of configuration yaml file or dictionary or TARDIS Configuration object
atom_data : str or tardis.atomic.AtomData
if atom_data is a string it is interpreted as a path to a file storing
the atomic data. Atomic data to use for this TARDIS simulation. If set to None, the
atomic data will be loaded according to keywords set in the configuration
[default=None]
virtual_packet_logging : bool
option to enable virtual packet logging
[default=False]
Returns
-------
Simulation
"""
from tardis.io.config_reader import Configuration
from tardis.io.atom_data.base import AtomData
from tardis.simulation import Simulation
if atom_data is not None:
try:
atom_data = AtomData.from_hdf(atom_data)
except TypeError:
atom_data = atom_data
if isinstance(config, Configuration):
tardis_config = config
else:
try:
tardis_config = Configuration.from_yaml(config)
except TypeError:
tardis_config = Configuration.from_config_dict(config)
simulation = Simulation.from_config(
tardis_config,
packet_source=packet_source,
atom_data=atom_data,
virtual_packet_logging=virtual_packet_logging,
)
for cb in simulation_callbacks:
simulation.add_callback(*cb)
simulation.run()
return simulation
def simulation_one_loop(
atomic_data_fname, config,
tardis_ref_data, generate_reference):
config.atom_data = atomic_data_fname
config.montecarlo.iterations = 2
config.montecarlo.no_of_packets = int(4e4)
config.montecarlo.last_no_of_packets = int(4e4)
simulation = Simulation.from_config(config)
simulation.run()
if not generate_reference:
return simulation
else:
simulation.model.hdf_properties = [
't_radiative',
'dilution_factor'
]
simulation.runner.hdf_properties = [
'j_estimator',
'nu_bar_estimator',
'output_nu',
'output_energy'
]
simulation.model.to_hdf(
tardis_ref_data,
'',
'test_simulation')
simulation.runner.to_hdf(
tardis_ref_data,
'',
'test_simulation')
pytest.skip(
'Reference data was generated during this run.')
def plasma(self, request, chianti_he_db_fpath, config, tardis_ref_data):
config["atom_data"] = chianti_he_db_fpath
sim = Simulation.from_config(config)
if request.config.getoption("--generate-reference"):
sim.plasma.to_hdf(tardis_ref_data, path=config.plasma.save_path)
pytest.skip(f"Reference data saved at {tardis_ref_data}")
return sim.plasma
def plasma(self, chianti_he_db_fpath, config, reference_fpath, reference):
config['atom_data'] = chianti_he_db_fpath
sim = Simulation.from_config(config)
if pytest.config.getvalue("--generate-reference"):
sim.plasma.to_hdf(reference_fpath, path=config.plasma.save_path)
pytest.skip("Reference data saved at {0}".format(reference_fpath))
return sim.plasma
def simulation_one_loop(raw_model, raw_plasma, tardis_config):
sim = Simulation.from_config(tardis_config,
model=raw_model,
plasma=raw_plasma)
sim.iterate(40000)
return sim
def plasma(self, chianti_he_db_fpath, config, reference_fpath, reference):
config['atom_data'] = chianti_he_db_fpath
sim = Simulation.from_config(config)
if pytest.config.getvalue("--generate-reference"):
sim.plasma.to_hdf(reference_fpath, path=config.plasma.save_path)
pytest.skip("Reference data saved at {0}".format(reference_fpath))
return sim.plasma
def simulation(
self, request, atomic_data_fname,
generate_reference, tardis_ref_data):
name = request.param[0]
config = Configuration.from_yaml(request.param[1])
config['atom_data'] = atomic_data_fname
simulation = Simulation.from_config(config)
simulation.run()
self._test_name = name
if not generate_reference:
return simulation
else:
simulation.plasma.hdf_properties = [
'level_number_density',
]
simulation.model.hdf_properties = [
't_radiative'
]
simulation.plasma.to_hdf(
tardis_ref_data,
self.name,
self._test_name)
simulation.model.to_hdf(
tardis_ref_data,
self.name,
self._test_name)
pytest.skip(
'Reference data was generated during this run.')
return simulation
def simulation_one_loop(atomic_data_fname, config, tardis_ref_data,
generate_reference):
config.atom_data = atomic_data_fname
config.montecarlo.iterations = 2
config.montecarlo.no_of_packets = int(4e4)
config.montecarlo.last_no_of_packets = int(4e4)
simulation = Simulation.from_config(config)
simulation.run()
if not generate_reference:
return simulation
else:
simulation.hdf_properties = [
"iterations_w",
"iterations_t_rad",
"iterations_electron_densities",
"iterations_t_inner",
]
simulation.model.hdf_properties = ["t_radiative", "dilution_factor"]
simulation.runner.hdf_properties = [
"j_estimator",
"nu_bar_estimator",
"output_nu",
"output_energy",
]
simulation.to_hdf(tardis_ref_data, "", "test_simulation")
simulation.model.to_hdf(tardis_ref_data, "", "test_simulation")
simulation.runner.to_hdf(tardis_ref_data, "", "test_simulation")
pytest.skip("Reference data was generated during this run.")
def test_plasma_vboundary(config_init_trad_fname, v_inner_boundary,
v_outer_boundary, atomic_data_fname):
tardis_config = Configuration.from_yaml(config_init_trad_fname)
tardis_config.atom_data = atomic_data_fname
tardis_config.model.structure.v_inner_boundary = (v_inner_boundary * u.km /
u.s)
tardis_config.model.structure.v_outer_boundary = (v_outer_boundary * u.km /
u.s)
simulation = Simulation.from_config(tardis_config)
def setup(self):
self.atom_data_filename = os.path.expanduser(os.path.expandvars(
pytest.config.getvalue('atomic-dataset')))
assert os.path.exists(self.atom_data_filename), ("{0} atomic datafiles"
" does not seem to "
"exist".format(
self.atom_data_filename))
self.config_yaml = yaml_load_config_file(
'tardis/plasma/tests/data/plasma_test_config_lte.yml')
self.config_yaml['atom_data'] = self.atom_data_filename
conf = Configuration.from_config_dict(self.config_yaml)
self.lte_simulation = Simulation.from_config(conf)
self.lte_simulation.run()
self.config_yaml = yaml_load_config_file(
'tardis/plasma/tests/data/plasma_test_config_nlte.yml')
self.config_yaml['atom_data'] = self.atom_data_filename
conf = Configuration.from_config_dict(self.config_yaml)
self.nlte_simulation = Simulation.from_config(conf)
self.nlte_simulation.run()
def simulation_one_loop(atomic_data_fname, config, tardis_ref_data,
generate_reference):
config.atom_data = atomic_data_fname
config.montecarlo.iterations = 2
config.montecarlo.no_of_packets = int(4e4)
config.montecarlo.last_no_of_packets = int(4e4)
simulation = Simulation.from_config(config)
simulation.run()
return simulation
def run_final_models_plus_pickle(params, fname='blondin_model_compare_ddc25.yml'):
model_config = Configuration.from_yaml(fname)
model_config.model.v_inner_boundary = params[2]
model_config.model.v_outer_boundary = 35000*u.km/u.s
model_config.supernova.luminosity_requested = params[1]
model_config.supernova.time_explosion = params[0]
sim = Simulation.from_config(model_config)
print(sim.model.v_boundary_inner)
sim.run()
import pickle
dump = 'Output/ddc25/ddc25_t{}_v{}.pickle'.format(params[0].value, params[2].value)
with open(dump, 'wb') as dumpfile:
pickle.dump(sim, dumpfile)
return 1
def test_montecarlo_main_loop(
config_montecarlo_1e5_verysimple,
atomic_dataset,
tardis_ref_path,
tmpdir,
set_seed_fixture,
random_call_fixture,
request,
):
montecarlo_configuration.LEGACY_MODE_ENABLED = True
# Setup model config from verysimple
atomic_data = deepcopy(atomic_dataset)
config_montecarlo_1e5_verysimple.montecarlo.last_no_of_packets = 1e5
config_montecarlo_1e5_verysimple.montecarlo.no_of_virtual_packets = 0
config_montecarlo_1e5_verysimple.montecarlo.iterations = 1
config_montecarlo_1e5_verysimple.plasma.line_interaction_type = "macroatom"
del config_montecarlo_1e5_verysimple["config_dirname"]
sim = Simulation.from_config(config_montecarlo_1e5_verysimple,
atom_data=atomic_data)
sim.run()
compare_fname = os.path.join(tardis_ref_path,
"montecarlo_1e5_compare_data.h5")
if request.config.getoption("--generate-reference"):
sim.to_hdf(compare_fname, overwrite=True)
# Load compare data from refdata
expected_nu = pd.read_hdf(compare_fname,
key="/simulation/runner/output_nu").values
expected_energy = pd.read_hdf(
compare_fname, key="/simulation/runner/output_energy").values
expected_nu_bar_estimator = pd.read_hdf(
compare_fname, key="/simulation/runner/nu_bar_estimator").values
expected_j_estimator = pd.read_hdf(
compare_fname, key="/simulation/runner/j_estimator").values
actual_energy = sim.runner.output_energy
actual_nu = sim.runner.output_nu
actual_nu_bar_estimator = sim.runner.nu_bar_estimator
actual_j_estimator = sim.runner.j_estimator
# Compare
npt.assert_allclose(actual_nu_bar_estimator,
expected_nu_bar_estimator,
rtol=1e-13)
npt.assert_allclose(actual_j_estimator, expected_j_estimator, rtol=1e-13)
npt.assert_allclose(actual_energy.value, expected_energy, rtol=1e-13)
npt.assert_allclose(actual_nu.value, expected_nu, rtol=1e-13)
def test_logging_simulation(atomic_data_fname, caplog):
"""
Testing the logs for simulations runs
"""
config = Configuration.from_yaml(
"tardis/io/tests/data/tardis_configv1_verysimple.yml")
config["atom_data"] = atomic_data_fname
simulation = Simulation.from_config(config)
simulation.run()
for record in caplog.records:
assert record.levelno >= logging.INFO
def run_tardis(config,
atom_data=None,
packet_source=None,
simulation_callbacks=[]):
"""
This function is one of the core functions to run TARDIS from a given
config object.
It will return a model object containing
Parameters
----------
config: ~str or ~dict
filename of configuration yaml file or dictionary
atom_data: ~str or ~tardis.atomic.AtomData
if atom_data is a string it is interpreted as a path to a file storing
the atomic data. Atomic data to use for this TARDIS simulation. If set to None, the
atomic data will be loaded according to keywords set in the configuration
[default=None]
"""
from tardis.io.config_reader import Configuration
from tardis.io.atom_data.base import AtomData
from tardis.simulation import Simulation
if atom_data is not None:
try:
atom_data = AtomData.from_hdf(atom_data)
except TypeError:
atom_data = atom_data
try:
tardis_config = Configuration.from_yaml(config)
except TypeError:
tardis_config = Configuration.from_config_dict(config)
simulation = Simulation.from_config(tardis_config,
packet_source=packet_source,
atom_data=atom_data)
for cb in simulation_callbacks:
simulation.add_callback(*cb)
simulation.run()
return simulation
def run_tardis_model(params):
model_config = Configuration.from_yaml('blondin_model_compare_ddc25.yml')
model_config.model.v_inner_boundary = params[2]
model_config.model.v_outer_boundary = 35000*u.km/u.s
model_config.supernova.luminosity_requested = params[1]
model_config.supernova.time_explosion = params[0]
sim = Simulation.from_config(model_config)
print(sim.model.v_boundary_inner)
sim.run()
fname = 'Output/ddc25/ddc25_t{}_v{}.hdf'.format(params[0].value, params[2].value)
with pd.HDFStore(fname) as hdf:
hdf.put('wavelength', pd.Series(sim.runner.spectrum.wavelength.value))
hdf.put('lum', pd.Series(sim.runner.spectrum_integrated.luminosity_density_lambda.value))
hdf.put('w', pd.Series(sim.plasma.w))
hdf.put('t_electrons', pd.Series(sim.plasma.t_electrons))
hdf.put('ion_num_dens', sim.plasma.ion_number_density)
hdf.put('electron_dens', sim.plasma.electron_densities)
return 1
def simulation_one_loop(atomic_data_fname, config, tardis_ref_data,
generate_reference):
config.atom_data = atomic_data_fname
config.montecarlo.iterations = 2
config.montecarlo.no_of_packets = int(4e4)
config.montecarlo.last_no_of_packets = int(4e4)
simulation = Simulation.from_config(config)
simulation.run()
if not generate_reference:
return simulation
else:
simulation.model.hdf_properties = ['t_radiative', 'dilution_factor']
simulation.runner.hdf_properties = [
'j_estimator', 'nu_bar_estimator', 'output_nu', 'output_energy'
]
simulation.model.to_hdf(tardis_ref_data, '', 'test_simulation')
simulation.runner.to_hdf(tardis_ref_data, '', 'test_simulation')
pytest.skip('Reference data was generated during this run.')
def run_tardis(config, atom_data=None, simulation_callbacks=[]):
"""
This function is one of the core functions to run TARDIS from a given
config object.
It will return a model object containing
Parameters
----------
config: ~str or ~dict
filename of configuration yaml file or dictionary
atom_data: ~str or ~tardis.atomic.AtomData
if atom_data is a string it is interpreted as a path to a file storing
the atomic data. Atomic data to use for this TARDIS simulation. If set to None, the
atomic data will be loaded according to keywords set in the configuration
[default=None]
"""
from tardis.io.config_reader import Configuration
from tardis.io.atom_data.base import AtomData
from tardis.simulation import Simulation
if atom_data is not None:
try:
atom_data = AtomData.from_hdf(atom_data)
except TypeError:
atom_data = atom_data
try:
tardis_config = Configuration.from_yaml(config)
except TypeError:
tardis_config = Configuration.from_config_dict(config)
simulation = Simulation.from_config(tardis_config, atom_data=atom_data)
for cb in simulation_callbacks:
simulation.add_callback(cb)
simulation.run()
return simulation
def simulation(self, request, atomic_data_fname, generate_reference,
tardis_ref_data):
name = request.param[0]
config = Configuration.from_yaml(request.param[1])
config['atom_data'] = atomic_data_fname
simulation = Simulation.from_config(config)
simulation.run()
self._test_name = name
if not generate_reference:
return simulation
else:
simulation.plasma.hdf_properties = [
'level_number_density',
]
simulation.model.hdf_properties = ['t_radiative']
simulation.plasma.to_hdf(tardis_ref_data, self.name,
self._test_name)
simulation.model.to_hdf(tardis_ref_data, self.name,
self._test_name)
pytest.skip('Reference data was generated during this run.')
return simulation
def simulation_verysimple(config_verysimple, atomic_dataset):
atomic_data = deepcopy(atomic_dataset)
sim = Simulation.from_config(config_verysimple, atom_data=atomic_data)
sim.iterate(4000)
return sim
def setup(self, request, reference, data_path, pytestconfig):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# Get capture manager
capmanager = pytestconfig.pluginmanager.getplugin('capturemanager')
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']
self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")
# A quick hack to use atom data per setup. Atom data is ingested from
# local HDF or downloaded and cached from a url, depending on data_path
# keys.
atom_data_name = yaml.load(open(self.config_file))['atom_data']
# Get the path to HDF file:
atom_data_filepath = os.path.join(
data_path['atom_data_path'], atom_data_name
)
# Load atom data file separately, pass it for forming tardis config.
self.atom_data = AtomData.from_hdf(atom_data_filepath)
# Check whether the atom data file in current run and the atom data
# file used in obtaining the reference data are same.
# TODO: hard coded UUID for kurucz atom data file, generalize it later.
# kurucz_data_file_uuid1 = "5ca3035ca8b311e3bb684437e69d75d7"
# assert self.atom_data.uuid1 == kurucz_data_file_uuid1
# Create a Configuration through yaml file and atom data.
tardis_config = Configuration.from_yaml(self.config_file)
# Check whether current run is with less packets.
if request.config.getoption("--less-packets"):
less_packets = request.config.integration_tests_config['less_packets']
tardis_config['montecarlo']['no_of_packets'] = (
less_packets['no_of_packets']
)
tardis_config['montecarlo']['last_no_of_packets'] = (
less_packets['last_no_of_packets']
)
# We now do a run with prepared config and get the simulation object.
self.result = Simulation.from_config(tardis_config,
atom_data=self.atom_data)
capmanager.suspendcapture(True)
# If current test run is just for collecting reference data, store the
# output model to HDF file, save it at specified path. Skip all tests.
# Else simply perform the run and move further for performing
# assertions.
self.result.run()
if request.config.getoption("--generate-reference"):
ref_data_path = os.path.join(
data_path['reference_path'], "{0}.h5".format(self.name)
)
if os.path.exists(ref_data_path):
pytest.skip(
'Reference data {0} does exist and tests will not '
'proceed generating new data'.format(ref_data_path))
self.result.to_hdf(file_path=ref_data_path)
pytest.skip("Reference data saved at {0}".format(
data_path['reference_path']
))
capmanager.resumecapture()
# Get the reference data through the fixture.
self.reference = reference
def setup(self, request, reference, data_path, pytestconfig):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# Get capture manager
capmanager = pytestconfig.pluginmanager.getplugin('capturemanager')
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']
self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")
# A quick hack to use atom data per setup. Atom data is ingested from
# local HDF or downloaded and cached from a url, depending on data_path
# keys.
atom_data_name = yaml.load(
open(self.config_file), Loader=yaml.CLoader)['atom_data']
# Get the path to HDF file:
atom_data_filepath = os.path.join(
data_path['atom_data_path'], atom_data_name
)
# Load atom data file separately, pass it for forming tardis config.
self.atom_data = AtomData.from_hdf(atom_data_filepath)
# Check whether the atom data file in current run and the atom data
# file used in obtaining the reference data are same.
# TODO: hard coded UUID for kurucz atom data file, generalize it later.
# kurucz_data_file_uuid1 = "5ca3035ca8b311e3bb684437e69d75d7"
# assert self.atom_data.uuid1 == kurucz_data_file_uuid1
# Create a Configuration through yaml file and atom data.
tardis_config = Configuration.from_yaml(self.config_file)
# Check whether current run is with less packets.
if request.config.getoption("--less-packets"):
less_packets = request.config.integration_tests_config['less_packets']
tardis_config['montecarlo']['no_of_packets'] = (
less_packets['no_of_packets']
)
tardis_config['montecarlo']['last_no_of_packets'] = (
less_packets['last_no_of_packets']
)
# We now do a run with prepared config and get the simulation object.
self.result = Simulation.from_config(tardis_config,
atom_data=self.atom_data)
capmanager.suspend_global_capture(True)
# If current test run is just for collecting reference data, store the
# output model to HDF file, save it at specified path. Skip all tests.
# Else simply perform the run and move further for performing
# assertions.
self.result.run()
if request.config.getoption("--generate-reference"):
ref_data_path = os.path.join(
data_path['reference_path'], "{0}.h5".format(self.name)
)
if os.path.exists(ref_data_path):
pytest.skip(
'Reference data {0} does exist and tests will not '
'proceed generating new data'.format(ref_data_path))
self.result.to_hdf(file_path=ref_data_path)
pytest.skip("Reference data saved at {0}".format(
data_path['reference_path']
))
capmanager.resume_global_capture()
# Get the reference data through the fixture.
self.reference = reference
console_handler.setFormatter(console_formatter)
logger.addHandler(console_handler)
if args.packet_log_file:
logger = logging.getLogger("tardis_packet_logger")
logger.setLevel(logging.DEBUG)
packet_logging_handler = logging.FileHandler(packet_logging_fname,
mode="w")
packet_logging_handler.setLevel(logging.DEBUG)
packet_logging_formatter = logging.Formatter(
"%(name)s - %(levelname)s - %(message)s")
console_handler.setFormatter(packet_logging_formatter)
logger.addHandler(packet_logging_handler)
tardis_config = config_reader.Configuration.from_yaml(args.config_fname)
simulation = Simulation.from_config(tardis_config)
def get_virtual_spectrum():
# Catch warning when acessing invalid spectrum_virtual
with warnings.catch_warnings(record=True) as w:
spectrum = simulation.runner.spectrum_virtual
if len(w) > 0 and w[-1]._category_name == "UserWarning":
warnings.warn("Virtual spectrum is not available, using the "
"real packet spectrum instead.")
spectrum = simulation.runner.spectrum
return spectrum
print("Saving the {} spectrum.".format(tardis_config.spectrum.method))
def simulation_one_loop(raw_model, tardis_config):
sim = Simulation(tardis_config)
sim.run_single_montecarlo(raw_model, 40000)
return sim
def simulation_one_loop(raw_model, raw_plasma, tardis_config):
sim = Simulation.from_config(tardis_config, model=raw_model,
plasma=raw_plasma)
sim.iterate(40000)
return sim
def simulation_verysimple(config_verysimple, atomic_dataset):
atomic_data = deepcopy(atomic_dataset)
sim = Simulation.from_config(config_verysimple, atom_data=atomic_data)
sim.iterate(4000)
return sim
def simulation_without_loop(atomic_data_fname, config):
config.atom_data = atomic_data_fname
config.montecarlo.iterations = 2
return Simulation.from_config(config)
def run_tardis(
config,
atom_data=None,
packet_source=None,
simulation_callbacks=[],
virtual_packet_logging=False,
show_cplots=True,
log_level=None,
specific_log_level=None,
**kwargs,
):
"""
Run TARDIS from a given config object.
It will return a model object containing the TARDIS Simulation.
Parameters
----------
config : str or dict or tardis.io.config_reader.Configuration
filename of configuration yaml file or dictionary or TARDIS Configuration object
atom_data : str or tardis.atomic.AtomData, optional
If atom_data is a string it is interpreted as a path to a file storing
the atomic data. Atomic data to use for this TARDIS simulation. If set to None (i.e. default),
the atomic data will be loaded according to keywords set in the configuration
packet_source : class, optional
A custom packet source class or a child class of `tardis.montecarlo.packet_source`
used to override the TARDIS `BasePacketSource` class.
simulation_callbacks : list of lists, default: `[]`, optional
Set of callbacks to call at the end of every iteration of the Simulation.
The format of the lists should look like:
[[callback1, callback_arg1], [callback2, callback_arg2], ...],
where the callback function signature should look like:
callback_function(simulation, extra_arg1, ...)
virtual_packet_logging : bool, default: False, optional
Option to enable virtual packet logging.
log_level : {'NOTSET', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'}, default: None, optional
Set the level of the TARDIS logger (follows native python logging framework log levels).
Use this parameter to override the `log_level` specified in the configuration file.
The default value `None` means that the `log_level` specified in the configuration file will be used.
specific_log_level : bool, default: None, optional
Allows to set specific logging levels, overriding the value in the configuration file.
If True, only show the log messages from a particular log level, set by `log_level`.
If False, the logger shows log messages belonging to the level set and all levels above it in severity.
The default value None means that the `specific_log_level` specified in the configuration file will be used.
show_cplots : bool, default: True, optional
Option to enable tardis convergence plots.
**kwargs : dict, optional
Optional keyword arguments including those
supported by :obj:`tardis.visualization.tools.convergence_plot.ConvergencePlots`.
Returns
-------
tardis.simulation.Simulation
Notes
-----
Please see the `logging tutorial <https://tardis-sn.github.io/tardis/io/optional/logging_configuration.html>`_ to know more about `log_level` and `specific` options.
"""
from tardis.io.logger.logger import logging_state
from tardis.io.config_reader import Configuration
from tardis.io.atom_data.base import AtomData
from tardis.simulation import Simulation
if isinstance(config, Configuration):
tardis_config = config
else:
try:
tardis_config = Configuration.from_yaml(config)
except TypeError:
logger.debug(
"TARDIS Config not available via YAML. Reading through TARDIS Config Dictionary"
)
tardis_config = Configuration.from_config_dict(config)
if not isinstance(show_cplots, bool):
raise TypeError("Expected bool in show_cplots argument")
logging_state(log_level, tardis_config, specific_log_level)
if atom_data is not None:
try:
atom_data = AtomData.from_hdf(atom_data)
except TypeError:
logger.debug(
"Atom Data Cannot be Read from HDF. Setting to Default Atom Data"
)
atom_data = atom_data
simulation = Simulation.from_config(
tardis_config,
packet_source=packet_source,
atom_data=atom_data,
virtual_packet_logging=virtual_packet_logging,
show_cplots=show_cplots,
**kwargs,
)
for cb in simulation_callbacks:
simulation.add_callback(*cb)
simulation.run()
return simulation
def test_montecarlo_main_loop(
config_verysimple,
atomic_dataset,
tardis_ref_path,
tmpdir,
set_seed_fixture,
random_call_fixture,
):
montecarlo_configuration.LEGACY_MODE_ENABLED = True
# Load C data from refdata
C_fname = os.path.join(tardis_ref_path, "montecarlo_1e5_compare_data.h5")
expected_nu = pd.read_hdf(C_fname,
key="/simulation/runner/output_nu").values
expected_energy = pd.read_hdf(
C_fname, key="/simulation/runner/output_energy").values
expected_nu_bar_estimator = pd.read_hdf(
C_fname, key="/simulation/runner/nu_bar_estimator").values
expected_j_estimator = pd.read_hdf(
C_fname, key="/simulation/runner/j_estimator").values
# Setup model config from verysimple
atomic_data = deepcopy(atomic_dataset)
config_verysimple.montecarlo.last_no_of_packets = 1e5
config_verysimple.montecarlo.no_of_virtual_packets = 0
config_verysimple.montecarlo.iterations = 1
config_verysimple.montecarlo.single_packet_seed = 0
del config_verysimple["config_dirname"]
sim = Simulation.from_config(config_verysimple, atom_data=atomic_data)
# Init model
numba_plasma = numba_plasma_initialize(sim.plasma,
line_interaction_type="macroatom")
runner = sim.runner
model = sim.model
runner._initialize_geometry_arrays(model)
runner._initialize_estimator_arrays(numba_plasma.tau_sobolev.shape)
runner._initialize_packets(model.t_inner.value, 100000, 0)
# Init parameters
montecarlo_configuration.v_packet_spawn_start_frequency = (
runner.virtual_spectrum_spawn_range.end.to(
u.Hz, equivalencies=u.spectral()).value)
montecarlo_configuration.v_packet_spawn_end_frequency = (
runner.virtual_spectrum_spawn_range.start.to(
u.Hz, equivalencies=u.spectral()).value)
montecarlo_configuration.temporary_v_packet_bins = 20000
montecarlo_configuration.full_relativity = runner.enable_full_relativity
montecarlo_configuration.single_packet_seed = 0
# Init packet collection from runner
packet_collection = PacketCollection(
runner.input_nu,
runner.input_mu,
runner.input_energy,
runner._output_nu,
runner._output_energy,
)
# Init model from runner
numba_model = NumbaModel(
runner.r_inner_cgs,
runner.r_outer_cgs,
model.time_explosion.to("s").value,
)
# Init estimators from runner
estimators = Estimators(
runner.j_estimator,
runner.nu_bar_estimator,
runner.j_blue_estimator,
runner.Edotlu_estimator,
)
# Empty vpacket collection
vpacket_collection = VPacketCollection(0, np.array([0, 0],
dtype=np.float64), 0,
np.inf, 0, 0)
# output arrays
output_nus = np.empty_like(packet_collection.packets_output_nu)
output_energies = np.empty_like(packet_collection.packets_output_nu)
# IMPORTANT: seeds RNG state within JIT
seed = 23111963
set_seed_fixture(seed)
for i in range(len(packet_collection.packets_input_nu)):
# Generate packet
packet = r_packet.RPacket(
numba_model.r_inner[0],
packet_collection.packets_input_mu[i],
packet_collection.packets_input_nu[i],
packet_collection.packets_input_energy[i],
seed,
i,
0,
)
# Loop packet
spl.single_packet_loop(packet, numba_model, numba_plasma, estimators,
vpacket_collection)
output_nus[i] = packet.nu
if packet.status == r_packet.PacketStatus.REABSORBED:
output_energies[i] = -packet.energy
elif packet.status == r_packet.PacketStatus.EMITTED:
output_energies[i] = packet.energy
# RNG to match C
random_call_fixture()
packet_collection.packets_output_energy[:] = output_energies[:]
packet_collection.packets_output_nu[:] = output_nus[:]
actual_energy = packet_collection.packets_output_energy
actual_nu = packet_collection.packets_output_nu
actual_nu_bar_estimator = estimators.nu_bar_estimator
actual_j_estimator = estimators.j_estimator
# Compare
npt.assert_allclose(actual_nu_bar_estimator,
expected_nu_bar_estimator,
rtol=1e-13)
npt.assert_allclose(actual_j_estimator, expected_j_estimator, rtol=1e-13)
npt.assert_allclose(actual_energy, expected_energy, rtol=1e-13)
npt.assert_allclose(actual_nu, expected_nu, rtol=1e-13)
