'''
ranks = 'phylum class order family genus species'.split()
print('taxid', 'orgname', *ranks, 'seq', sep=',')
skipped = 0
for N, seq in enumerate(soup.find_all('tseq')):
taxid = int(seq.find('tseq_taxid').get_text())
lineage = dict(db.lineage_id(taxid, ranks=True))
skip = False
rs = []
for rank in ranks:
if rank in lineage:
rs += [db.sci_name(lineage[rank])]
else:
print(f'{taxid=} has no {rank=} in {lineage=}, skipping...',
file=sys.stderr)
skip = True
break
if skip:
skipped += 1
continue
print(taxid,
seq.find('tseq_orgname').get_text(),
*rs,
seq.find('tseq_sequence').get_text(),
sep=',')
#!/usr/bin/env python3
import sys
from taxadb.taxid import TaxID
taxid = TaxID()
for t in sys.argv[1:]:
name = taxid.sci_name(int(t))
print(name)
#!/usr/bin/env python3
from taxadb.taxid import TaxID
import fileinput
taxid = TaxID()
for line in fileinput.input():
print(taxid.sci_name(line.rstrip()))