def doProcessRender(self, request):
args = {'title': 'Administration'}
self.setApplicationLayout('registered/base.html', args)
self.addPageletBinding('navBar', NavBarPagelet())
self.addPageletBinding('center-1', WorkbenchPagelet())
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
args = {'title': 'Tag/GeneLink Manager'}
self.setApplicationLayout('registered/base.html', args)
self.addPageletBinding('navBar', NavBarPagelet())
self.addPageletBinding('center-1', TGManagerPagelet())
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
args = {'title': 'Advanced Search'}
self.setApplicationLayout('public/base.html', args)
self.addPageletBinding('navBar', NavBarPagelet())
self.addPageletBinding('center-1', AdvancedSearchPagelet())
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
args = {
'title' : 'Homepage'
}
self.setApplicationLayout('public/base.html', args)
#self.addPageletBinding('navBar', NavBarPagelet(addHelpButton=True))
self.addPageletBinding('navBar', NavBarPagelet(addHelpButton=True, isHomePage=True))
self.addPageletBinding('center-1', HomePagelet())
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
self.addPageletBinding('navBar', NavBarPagelet())
numSearch = 0
searchImageDesc = str(request.GET.get('searchImageDesc',
'')).lower() == "true"
searchImageNotes = str(request.GET.get('searchImageNotes',
'')).lower() == "true"
searchGeneName = str(request.GET.get('searchGeneName',
'')).lower() == "true"
searchGeneSymbol = str(request.GET.get('searchGeneSymbol',
'')).lower() == "true"
searchGeneID = str(request.GET.get('searchGeneID',
'')).lower() == "true"
query = Util.getDelimitedList(request.GET, 'query')
#print searchImageDesc
#print searchImageNotes
#print searchGeneName
#print searchGeneSymbol
#print searchGeneID
candidate_cat = []
if searchImageDesc:
query = Util.getDelimitedList(request.GET, 'query')
print query
print len(query)
candidates_ImgDesc = []
candidate_cat.append('Image Description')
if query:
pictures = Picture.objects.filter(
description__icontains=query[0])
print pictures
candidates_ImgDesc.append(pictures)
formatQuery = ""
if query:
formatQuery += 'General Query: "' + ", ".join(query) + '"'
search = {
'candidate_cat': candidate_cat,
'candidates_ImgDesc': candidates_ImgDesc,
'query': formatQuery
}
#if searchImageDesc:
numSearch += 1
self.addPageletBinding('center-' + str(numSearch),
ImageSearchPagelet().setSearchParams(search))
args = {'title': 'Search', 'numPagelets': numSearch}
self.setApplicationLayout('public/search.html', args)
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
args = {}
self.addPageletBinding('navBar', NavBarPagelet(addHelpButton=True))
if (request.user.is_authenticated() and request.user.is_staff):
args['title'] = 'Image Editor'
self.addPageletBinding('center-1', AdminPagelet())
else:
args['title'] = 'Image Viewer'
self.addPageletBinding('center-1', PublicPagelet())
self.setApplicationLayout('public/base.html', args)
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
self.addPageletBinding('navBar', NavBarPagelet(addHelpButton=True))
numSearch = 0
searchCats = list('00000')
searchImageDesc = str(request.GET.get('searchImageDesc',
'')).lower() == "true"
searchImageNotes = str(request.GET.get('searchImageNotes',
'')).lower() == "true"
searchGeneName = str(request.GET.get('searchGeneName',
'')).lower() == "true"
searchGeneSymbol = str(request.GET.get('searchGeneSymbol',
'')).lower() == "true"
searchGeneID = str(request.GET.get('searchGeneID',
'')).lower() == "true"
query = Util.getDelimitedList(request.GET, 'query')
if not query:
query = list()
query.append('')
#candidates = [['Image Description'], ['Image Notes'], ['Gene Name'], ['Gene Symbol'], ['Gene ID']]
candidates = [['0'], ['1'], ['2'], ['3'], ['4']]
if searchImageDesc:
candidates[0][0] = 'Image Description'
searchCats[0] = '1'
pictures = Picture.objects.filter(description__icontains=query[0])
for picture in pictures:
candidates[0].append(picture)
if searchImageNotes:
candidates[1][0] = 'Image Notes'
searchCats[1] = '1'
pNotes = PictureNotes.objects.filter(notes__icontains=query[0])
pictureIDs = []
for note in pNotes:
pictureID = note.picture.pk
if not pictureID in pictureIDs:
pictureIDs.append(pictureID)
candidates[1].append(pictureID)
if searchGeneName:
candidates[2][0] = 'Gene Name'
searchCats[2] = '1'
pictureIDs = []
pMgdbs = PictureMgdb.objects.filter(
locus_full_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if not pictureID in pictureIDs:
pictureIDs.append(pictureID)
candidates[2].append(pictureID)
if searchGeneSymbol:
candidates[3][0] = 'Gene Symbol'
searchCats[3] = '1'
pictureIDs = []
pMgdbs = PictureMgdb.objects.filter(locus_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if not pictureID in pictureIDs:
pictureIDs.append(pictureID)
candidates[3].append(pictureID)
if searchGeneID:
candidates[4][0] = 'Gene ID'
searchCats[4] = '1'
pictureIDs = []
pIDs = PictureGeneID.objects.filter(gene_id__icontains=query[0])
for pID in pIDs:
pictureID = pID.picture.pk
if pictureID not in pictureIDs:
pictureIDs.append(pictureID)
candidates[4].append(pictureID)
# Store searching keyword
if str(request.user) != 'AnonymousUser':
catSettings = ''.join(searchCats)
newKeyword, created = iSearchHistory.objects.get_or_create(
keyword=query[0], user=request.user)
if created:
updateKeyword = iSearchHistory.objects.get(
pk__exact=newKeyword.pk)
updateKeyword.catSettings = catSettings
updateKeyword.save()
else:
newKeyword.catSettings = catSettings
newKeyword.save()
formatQuery = ""
if query:
formatQuery += 'General Query: "' + ", ".join(query) + '"'
search = {'candidates': candidates, 'query': query[0]}
numSearch += 1
self.addPageletBinding('center-' + str(numSearch),
iSearchPagelet().setSearchParams(search))
args = {'title': 'Image search', 'numPagelets': numSearch}
self.setApplicationLayout('public/iSearch.html', args)
self.addPageletBinding('footer', FooterPagelet())
def doProcessRender(self, request):
self.addPageletBinding('navBar', NavBarPagelet())
numSearch = 0
searchImages = str(request.GET.get('searchImages', '')).lower() == "true"
searchGenomes = str(request.GET.get('searchGenomes', '')).lower() == "true"
if searchImages or searchGenomes:
query = Util.getDelimitedList(request.GET,'query')
organismId = Util.getDelimitedList(request.GET, 'organismId')
candidates = []
if organismId:
organisms = Organism.objects.filter(pk__in=organismId)
candidates.append(organisms)
if query:
for subquery in query:
splitQuery = subquery.strip().split(' ')
if (len(splitQuery) == 1):
if organismId:
candidate = Organism.objects.filter(species=splitQuery[0]).exclude(organism_id__in=organismId)
else:
candidate = Organism.objects.filter(species=splitQuery[0])
candidates.append(candidate)
elif(len(splitQuery) == 2):
if organismId:
candidate = Organism.objects.filter(Q(species=splitQuery[1]) & Q(genus=splitQuery[0])).exclude(organism_id__in=organismId)
else:
candidate = Organism.objects.filter(Q(species=splitQuery[1]) & Q(genus=splitQuery[0]))
candidates.append(candidate)
else:
if organismId:
candidate = Organism.objects.filter(common_name=subquery).exclude(organism_id__in=organismId)
else:
candidate = Organism.objects.filter(common_name=subquery)
candidates.append(candidate)
formatQuery = ""
if query:
formatQuery += 'General Query: "' + ", ".join(query) + '"'
if organismId:
amp = " & " if query else ""
formatQuery += amp + 'Organism Id Query: "' + ", ".join(organismId) + '"'
search = {
'candidates' : candidates,
'query' : formatQuery
}
if searchImages:
numSearch += 1
self.addPageletBinding('center-' + str(numSearch), ImageSearchPagelet().setSearchParams(search))
if searchGenomes:
numSearch += 1
self.addPageletBinding('center-' + str(numSearch), GBrowseSearchPagelet().setSearchParams(search))
args = {
'title' : 'Search',
'numPagelets' : numSearch
}
self.setApplicationLayout('public/search.html', args)
self.addPageletBinding('footer', FooterPagelet())
