def map_reduce(last_elem: tf.Tensor, data: tf.data.Dataset, map_fn, reduce_fn=tf.add, **kwargs):
"""
Iterate over elements in a tf.data.Dataset.
Fetches new elements until "last_elem" appears at `idx[-1]`.
TODO: remove 'last_elem' as soon as tensorflow iterators support some `has_next` functionality
:param last_elem: the last element
:param data: tf.data.Dataset containing `(idx, val)` with idx as a vector of shape `(batch_size,)`
:param map_fn: function taking arguments `(idx, val)`
:param reduce_fn: function taking two return values of `map_fn` and reducing them into one return value
:param kwargs: additional arguments passed to the `tf.while loop`
:return:
"""
iterator = data.make_initializable_iterator()
def cond(idx, val):
return tf.not_equal(tf.gather(idx, tf.size(idx) - 1), last_elem)
def body_fn(old_idx, old_val):
idx, val = iterator.get_next()
return idx, reduce_fn(old_val, map_fn(idx, val))
def init_vals():
idx, val = iterator.get_next()
return idx, map_fn(idx, val)
with tf.control_dependencies([iterator.initializer]):
_, reduced = tf.while_loop(cond, body_fn, init_vals(), **kwargs)
return reduced
def get_input_nodes(dataset: tf.data.Dataset) -> Dict[str, str]:
"""
Args:
dataset: A `tf.data.Dataset` instance.
Returns:
Dictionary from input feature-name to the corresponding node in the graph.
"""
dataset_iter = dataset.make_initializable_iterator()
features = dataset_iter.get_next()
if isinstance(features, tuple): # thus including input, target, etc.
features = features[0] # input only, assuming that input is the first.
if isinstance(features, dict):
raise TypeError
input_nodes = {}
for input_name, tensor in features.items():
input_nodes[input_name] = tensor.name
return input_nodes
def fit_dataset(self, dataset: tf.data.Dataset):
dataset = dataset.batch(self.default_batch_size).prefetch(
self.default_batch_size)
iterator = dataset.make_initializable_iterator()
with tf.Session() as self._sess:
for i in range(5):
self._sess.run(iterator.initializer)
logging.info('Fitting layer %d' % i)
batch_n = 0
self._load_or_init_session()
while True:
try:
batch = iterator.get_next()
stack_batch_op = tf.stack(batch)
stacked_batch = self._sess.run(stack_batch_op)
for step in range(self.epochs):
feed_dict = {
self._x0: stacked_batch,
self._corruption_level: self.corruption_level
}
self._sess.run(self.train_steps[i],
feed_dict=feed_dict)
self._log_progress(batch_n, step, stacked_batch, i)
batch_n += 1
if (batch_n + 1) % 25 == 0:
self._write_summaries(stacked_batch)
except tf.errors.OutOfRangeError:
break
logging.info(
'Saving trained params to %s with global_step %s' %
(self.checkpoint_file, self.global_step))
self._saver.save(self._sess,
self.checkpoint_file,
global_step=self.global_step)
