def maybe_check_quadrature_param(param, name, validate_args):
"""Helper which checks validity of `loc` and `scale` init args."""
with tf.name_scope("check_" + name):
assertions = []
if tensorshape_util.rank(param.shape) is not None:
if tensorshape_util.rank(param.shape) == 0:
raise ValueError("Mixing params must be a (batch of) vector; "
"{}.rank={} is not at least one.".format(
name, tensorshape_util.rank(param.shape)))
elif validate_args:
assertions.append(
assert_util.assert_rank_at_least(
param,
1,
message=("Mixing params must be a (batch of) vector; "
"{}.rank is not at least one.".format(name))))
# TODO(jvdillon): Remove once we support k-mixtures.
if tensorshape_util.with_rank_at_least(param.shape, 1)[-1] is not None:
if tf.compat.dimension_value(param.shape[-1]) != 1:
raise NotImplementedError(
"Currently only bimixtures are supported; "
"{}.shape[-1]={} is not 1.".format(
name, tf.compat.dimension_value(param.shape[-1])))
elif validate_args:
assertions.append(
assert_util.assert_equal(
tf.shape(param)[-1],
1,
message=("Currently only bimixtures are supported; "
"{}.shape[-1] is not 1.".format(name))))
if assertions:
return distribution_util.with_dependencies(assertions, param)
return param
def _maybe_validate_shape_override(self, override_shape, base_is_scalar,
validate_args, name):
"""Helper to __init__ which ensures override batch/event_shape are valid."""
if override_shape is None:
override_shape = []
override_shape = tf.convert_to_tensor(override_shape,
dtype=tf.int32,
name=name)
if not dtype_util.is_integer(override_shape.dtype):
raise TypeError("shape override must be an integer")
override_is_scalar = _is_scalar_from_shape_tensor(override_shape)
if tf.get_static_value(override_is_scalar):
return self._empty
dynamic_assertions = []
if tensorshape_util.rank(override_shape.shape) is not None:
if tensorshape_util.rank(override_shape.shape) != 1:
raise ValueError("shape override must be a vector")
elif validate_args:
dynamic_assertions += [
assert_util.assert_rank(
override_shape,
1,
message="shape override must be a vector")
]
if tf.get_static_value(override_shape) is not None:
if any(s < 0 for s in tf.get_static_value(override_shape)):
raise ValueError(
"shape override must have non-negative elements")
elif validate_args:
dynamic_assertions += [
assert_util.assert_non_negative(
override_shape,
message="shape override must have non-negative elements")
]
is_both_nonscalar = prefer_static.logical_and(
prefer_static.logical_not(base_is_scalar),
prefer_static.logical_not(override_is_scalar))
if tf.get_static_value(is_both_nonscalar) is not None:
if tf.get_static_value(is_both_nonscalar):
raise ValueError("base distribution not scalar")
elif validate_args:
dynamic_assertions += [
assert_util.assert_equal(
is_both_nonscalar,
False,
message="base distribution not scalar")
]
if not dynamic_assertions:
return override_shape
return distribution_util.with_dependencies(dynamic_assertions,
override_shape)
def _assert_valid_sample(self, x):
if not self.validate_args:
return x
return distribution_util.with_dependencies([
assert_util.assert_non_positive(x),
assert_util.assert_near(
tf.zeros([], dtype=self.dtype), tf.reduce_logsumexp(x, axis=[-1])),
], x)
def _maybe_assert_valid_sample(self, x, dtype):
if not self.validate_args:
return x
one = tf.ones([], dtype=dtype)
return distribution_util.with_dependencies([
assert_util.assert_non_negative(x),
assert_util.assert_less_equal(x, one),
assert_util.assert_near(one, tf.reduce_sum(x, axis=[-1])),
], x)
def _check_integer(self, value):
with tf.name_scope("check_integer"):
value = tf.convert_to_tensor(value, name="value")
if not self.validate_args:
return value
dependencies = [
distribution_util.assert_integer_form(
value, message="value has non-integer components.")
]
return distribution_util.with_dependencies(dependencies, value)
def _maybe_assert_valid_sample(self, counts):
"""Check counts for proper shape, values, then return tensor version."""
if not self.validate_args:
return counts
counts = distribution_util.embed_check_nonnegative_integer_form(counts)
msg = ('Sampled counts must be itemwise less than '
'or equal to `total_count` parameter.')
return distribution_util.with_dependencies([
assert_util.assert_less_equal(counts, self.total_count, message=msg),
], counts)
def _maybe_assert_valid(self, x):
if not self.validate_args:
return x
return distribution_util.with_dependencies([
assert_util.assert_non_negative(
x, message="sample must be non-negative"),
assert_util.assert_less_equal(
x,
tf.ones([], self.concentration0.dtype),
message="sample must be no larger than `1`."),
], x)
def _maybe_assert_valid_sample(self, counts):
"""Check counts for proper shape, values, then return tensor version."""
if not self.validate_args:
return counts
counts = distribution_util.embed_check_nonnegative_integer_form(counts)
return distribution_util.with_dependencies([
assert_util.assert_equal(
self.total_count,
tf.reduce_sum(counts, axis=-1),
message='counts last-dimension must sum to `self.total_count`'
),
], counts)
def __init__(self, temperature, validate_args=False, name="softfloor"):
with tf.name_scope(name) as name:
self._temperature = tf.convert_to_tensor(temperature,
name="temperature")
if validate_args:
self._temperature = distribution_util.with_dependencies([
assert_util.assert_positive(
self._temperature,
message="Argument temperature was not positive")
], self._temperature)
super(Softfloor, self).__init__(forward_min_event_ndims=0,
validate_args=validate_args,
dtype=self._temperature.dtype,
name=name)
def _mean(self):
df = tf.convert_to_tensor(self.df)
loc = tf.convert_to_tensor(self.loc)
mean = loc * tf.ones(self._batch_shape_tensor(loc=loc),
dtype=self.dtype)
if self.allow_nan_stats:
return tf.where(df > 1., mean,
dtype_util.as_numpy_dtype(self.dtype)(np.nan))
else:
return distribution_util.with_dependencies([
assert_util.assert_less(
tf.ones([], dtype=self.dtype),
df,
message='mean not defined for components of df <= 1'),
], mean)
def _variance(self):
df = tf.convert_to_tensor(self.df)
scale = tf.convert_to_tensor(self.scale)
# We need to put the tf.where inside the outer tf.where to ensure we never
# hit a NaN in the gradient.
denom = tf.where(df > 2., df - 2., tf.ones_like(df))
# Abs(scale) superfluous.
var = (tf.ones(self._batch_shape_tensor(df=df, scale=scale),
dtype=self.dtype) * tf.square(scale) * df / denom)
# When 1 < df <= 2, variance is infinite.
result_where_defined = tf.where(
df > 2., var,
dtype_util.as_numpy_dtype(self.dtype)(np.inf))
if self.allow_nan_stats:
return tf.where(df > 1., result_where_defined,
dtype_util.as_numpy_dtype(self.dtype)(np.nan))
else:
return distribution_util.with_dependencies([
assert_util.assert_less(
tf.ones([], dtype=self.dtype),
df,
message='variance not defined for components of df <= 1'),
], result_where_defined)
def _create_scale_operator(self, identity_multiplier, diag, tril,
perturb_diag, perturb_factor, shift, validate_args,
dtype):
"""Construct `scale` from various components.
Args:
identity_multiplier: floating point rank 0 `Tensor` representing a scaling
done to the identity matrix.
diag: Floating-point `Tensor` representing the diagonal matrix.`diag` has
shape `[N1, N2, ... k]`, which represents a k x k diagonal matrix.
tril: Floating-point `Tensor` representing the lower triangular matrix.
`tril` has shape `[N1, N2, ... k, k]`, which represents a k x k lower
triangular matrix.
perturb_diag: Floating-point `Tensor` representing the diagonal matrix of
the low rank update.
perturb_factor: Floating-point `Tensor` representing factor matrix.
shift: Floating-point `Tensor` representing `shift in `scale @ X + shift`.
validate_args: Python `bool` indicating whether arguments should be
checked for correctness.
dtype: `DType` for arg `Tensor` conversions.
Returns:
scale. In the case of scaling by a constant, scale is a
floating point `Tensor`. Otherwise, scale is a `LinearOperator`.
Raises:
ValueError: if all of `tril`, `diag` and `identity_multiplier` are `None`.
"""
identity_multiplier = _as_tensor(identity_multiplier, "identity_multiplier",
dtype)
diag = _as_tensor(diag, "diag", dtype)
tril = _as_tensor(tril, "tril", dtype)
perturb_diag = _as_tensor(perturb_diag, "perturb_diag", dtype)
perturb_factor = _as_tensor(perturb_factor, "perturb_factor", dtype)
# If possible, use the low rank update to infer the shape of
# the identity matrix, when scale represents a scaled identity matrix
# with a low rank update.
shape_hint = None
if perturb_factor is not None:
shape_hint = distribution_util.dimension_size(perturb_factor, axis=-2)
if self._is_only_identity_multiplier:
if validate_args:
return distribution_util.with_dependencies([
assert_util.assert_none_equal(
identity_multiplier, tf.zeros([], identity_multiplier.dtype),
["identity_multiplier should be non-zero."])
], identity_multiplier)
return identity_multiplier
scale = distribution_util.make_tril_scale(
loc=shift,
scale_tril=tril,
scale_diag=diag,
scale_identity_multiplier=identity_multiplier,
validate_args=validate_args,
assert_positive=False,
shape_hint=shape_hint)
if perturb_factor is not None:
return tf.linalg.LinearOperatorLowRankUpdate(
scale,
u=perturb_factor,
diag_update=perturb_diag,
is_diag_update_positive=perturb_diag is None,
is_non_singular=True, # Implied by is_positive_definite=True.
is_self_adjoint=True,
is_positive_definite=True,
is_square=True)
return scale
def __init__(self,
df,
scale=None,
scale_tril=None,
input_output_cholesky=False,
validate_args=False,
allow_nan_stats=True,
name="Wishart"):
"""Construct Wishart distributions.
Args:
df: `float` or `double` `Tensor`. Degrees of freedom, must be greater than
or equal to dimension of the scale matrix.
scale: `float` or `double` `Tensor`. The symmetric positive definite
scale matrix of the distribution. Exactly one of `scale` and
'scale_tril` must be passed.
scale_tril: `float` or `double` `Tensor`. The Cholesky factorization
of the symmetric positive definite scale matrix of the distribution.
Exactly one of `scale` and 'scale_tril` must be passed.
input_output_cholesky: Python `bool`. If `True`, functions whose input or
output have the semantics of samples assume inputs are in Cholesky form
and return outputs in Cholesky form. In particular, if this flag is
`True`, input to `log_prob` is presumed of Cholesky form and output from
`sample`, `mean`, and `mode` are of Cholesky form. Setting this
argument to `True` is purely a computational optimization and does not
change the underlying distribution; for instance, `mean` returns the
Cholesky of the mean, not the mean of Cholesky factors. The `variance`
and `stddev` methods are unaffected by this flag.
Default value: `False` (i.e., input/output does not have Cholesky
semantics).
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`, statistics
(e.g., mean, mode, variance) use the value "`NaN`" to indicate the
result is undefined. When `False`, an exception is raised if one or
more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
ValueError: if zero or both of 'scale' and 'scale_tril' are passed in.
"""
parameters = dict(locals())
with tf.name_scope(name) as name:
with tf.name_scope("init"):
if (scale is None) == (scale_tril is None):
raise ValueError(
"Must pass scale or scale_tril, but not both.")
dtype = dtype_util.common_dtype([df, scale, scale_tril],
tf.float32)
df = tf.convert_to_tensor(df, name="df", dtype=dtype)
if scale is not None:
scale = tf.convert_to_tensor(scale,
name="scale",
dtype=dtype)
if validate_args:
scale = distribution_util.assert_symmetric(scale)
scale_tril = tf.linalg.cholesky(scale)
else: # scale_tril is not None
scale_tril = tf.convert_to_tensor(scale_tril,
name="scale_tril",
dtype=dtype)
if validate_args:
scale_tril = distribution_util.with_dependencies([
assert_util.assert_positive(
tf.linalg.diag_part(scale_tril),
message="scale_tril must be positive definite"
),
assert_util.assert_equal(
tf.shape(scale_tril)[-1],
tf.shape(scale_tril)[-2],
message="scale_tril must be square")
], scale_tril)
super(Wishart, self).__init__(
df=df,
scale_operator=tf.linalg.LinearOperatorLowerTriangular(
tril=scale_tril,
is_non_singular=True,
is_positive_definite=True,
is_square=True),
input_output_cholesky=input_output_cholesky,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
name=name)
self._parameters = parameters
def __init__(self,
mix_loc,
temperature,
distribution,
loc=None,
scale=None,
quadrature_size=8,
quadrature_fn=quadrature_scheme_softmaxnormal_quantiles,
validate_args=False,
allow_nan_stats=True,
name="VectorDiffeomixture"):
"""Constructs the VectorDiffeomixture on `R^d`.
The vector diffeomixture (VDM) approximates the compound distribution
```none
p(x) = int p(x | z) p(z) dz,
where z is in the K-simplex, and
p(x | z) := p(x | loc=sum_k z[k] loc[k], scale=sum_k z[k] scale[k])
```
Args:
mix_loc: `float`-like `Tensor` with shape `[b1, ..., bB, K-1]`.
In terms of samples, larger `mix_loc[..., k]` ==>
`Z` is more likely to put more weight on its `kth` component.
temperature: `float`-like `Tensor`. Broadcastable with `mix_loc`.
In terms of samples, smaller `temperature` means one component is more
likely to dominate. I.e., smaller `temperature` makes the VDM look more
like a standard mixture of `K` components.
distribution: `tfp.distributions.Distribution`-like instance. Distribution
from which `d` iid samples are used as input to the selected affine
transformation. Must be a scalar-batch, scalar-event distribution.
Typically `distribution.reparameterization_type = FULLY_REPARAMETERIZED`
or it is a function of non-trainable parameters. WARNING: If you
backprop through a VectorDiffeomixture sample and the `distribution`
is not `FULLY_REPARAMETERIZED` yet is a function of trainable variables,
then the gradient will be incorrect!
loc: Length-`K` list of `float`-type `Tensor`s. The `k`-th element
represents the `shift` used for the `k`-th affine transformation. If
the `k`-th item is `None`, `loc` is implicitly `0`. When specified,
must have shape `[B1, ..., Bb, d]` where `b >= 0` and `d` is the event
size.
scale: Length-`K` list of `LinearOperator`s. Each should be
positive-definite and operate on a `d`-dimensional vector space. The
`k`-th element represents the `scale` used for the `k`-th affine
transformation. `LinearOperator`s must have shape `[B1, ..., Bb, d, d]`,
`b >= 0`, i.e., characterizes `b`-batches of `d x d` matrices
quadrature_size: Python `int` scalar representing number of
quadrature points. Larger `quadrature_size` means `q_N(x)` better
approximates `p(x)`.
quadrature_fn: Python callable taking `normal_loc`, `normal_scale`,
`quadrature_size`, `validate_args` and returning `tuple(grid, probs)`
representing the SoftmaxNormal grid and corresponding normalized weight.
normalized) weight.
Default value: `quadrature_scheme_softmaxnormal_quantiles`.
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`,
statistics (e.g., mean, mode, variance) use the value "`NaN`" to
indicate the result is undefined. When `False`, an exception is raised
if one or more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
ValueError: if `not scale or len(scale) < 2`.
ValueError: if `len(loc) != len(scale)`
ValueError: if `quadrature_grid_and_probs is not None` and
`len(quadrature_grid_and_probs[0]) != len(quadrature_grid_and_probs[1])`
ValueError: if `validate_args` and any not scale.is_positive_definite.
TypeError: if any scale.dtype != scale[0].dtype.
TypeError: if any loc.dtype != scale[0].dtype.
NotImplementedError: if `len(scale) != 2`.
ValueError: if `not distribution.is_scalar_batch`.
ValueError: if `not distribution.is_scalar_event`.
"""
parameters = dict(locals())
with tf.name_scope(name) as name:
if not scale or len(scale) < 2:
raise ValueError(
"Must specify list (or list-like object) of scale "
"LinearOperators, one for each component with "
"num_component >= 2.")
if loc is None:
loc = [None] * len(scale)
if len(loc) != len(scale):
raise ValueError("loc/scale must be same-length lists "
"(or same-length list-like objects).")
dtype = dtype_util.base_dtype(scale[0].dtype)
loc = [
tf.convert_to_tensor(loc_, dtype=dtype, name="loc{}".format(k))
if loc_ is not None else None for k, loc_ in enumerate(loc)
]
for k, scale_ in enumerate(scale):
if validate_args and not scale_.is_positive_definite:
raise ValueError(
"scale[{}].is_positive_definite = {} != True".format(
k, scale_.is_positive_definite))
if dtype_util.base_dtype(scale_.dtype) != dtype:
raise TypeError(
"dtype mismatch; scale[{}].base_dtype=\"{}\" != \"{}\""
.format(k, dtype_util.name(scale_.dtype),
dtype_util.name(dtype)))
self._endpoint_affine = [
affine_linear_operator_bijector.AffineLinearOperator( # pylint: disable=g-complex-comprehension
shift=loc_,
scale=scale_,
validate_args=validate_args,
name="endpoint_affine_{}".format(k))
for k, (loc_, scale_) in enumerate(zip(loc, scale))
]
# TODO(jvdillon): Remove once we support k-mixtures.
# We make this assertion here because otherwise `grid` would need to be a
# vector not a scalar.
if len(scale) != 2:
raise NotImplementedError(
"Currently only bimixtures are supported; "
"len(scale)={} is not 2.".format(len(scale)))
mix_loc = tf.convert_to_tensor(mix_loc,
dtype=dtype,
name="mix_loc")
temperature = tf.convert_to_tensor(temperature,
dtype=dtype,
name="temperature")
self._grid, probs = tuple(
quadrature_fn(mix_loc / temperature, 1. / temperature,
quadrature_size, validate_args))
# Note: by creating the logits as `log(prob)` we ensure that
# `self.mixture_distribution.logits` is equivalent to
# `math_ops.log(self.mixture_distribution.probs)`.
self._mixture_distribution = categorical.Categorical(
logits=tf.math.log(probs),
validate_args=validate_args,
allow_nan_stats=allow_nan_stats)
asserts = distribution_util.maybe_check_scalar_distribution(
distribution, dtype, validate_args)
if asserts:
self._grid = distribution_util.with_dependencies(
asserts, self._grid)
self._distribution = distribution
self._interpolated_affine = [
affine_linear_operator_bijector.AffineLinearOperator( # pylint: disable=g-complex-comprehension
shift=loc_,
scale=scale_,
validate_args=validate_args,
name="interpolated_affine_{}".format(k))
for k, (loc_, scale_) in enumerate(
zip(interpolate_loc(self._grid, loc),
interpolate_scale(self._grid, scale)))
]
[
self._batch_shape_,
self._batch_shape_tensor_,
self._event_shape_,
self._event_shape_tensor_,
] = determine_batch_event_shapes(self._grid, self._endpoint_affine)
super(VectorDiffeomixture, self).__init__(
dtype=dtype,
# We hard-code `FULLY_REPARAMETERIZED` because when
# `validate_args=True` we verify that indeed
# `distribution.reparameterization_type == FULLY_REPARAMETERIZED`. A
# distribution which is a function of only non-trainable parameters
# also implies we can use `FULLY_REPARAMETERIZED`. However, we cannot
# easily test for that possibility thus we use `validate_args=False`
# as a "back-door" to allow users a way to use non
# `FULLY_REPARAMETERIZED` distribution. In such cases IT IS THE USERS
# RESPONSIBILITY to verify that the base distribution is a function of
# non-trainable parameters.
reparameterization_type=reparameterization.
FULLY_REPARAMETERIZED,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
parameters=parameters,
name=name)
def __init__(self,
loc,
scale,
skewness=None,
tailweight=None,
distribution=None,
validate_args=False,
allow_nan_stats=True,
name="SinhArcsinh"):
"""Construct SinhArcsinh distribution on `(-inf, inf)`.
Arguments `(loc, scale, skewness, tailweight)` must have broadcastable shape
(indexing batch dimensions). They must all have the same `dtype`.
Args:
loc: Floating-point `Tensor`.
scale: `Tensor` of same `dtype` as `loc`.
skewness: Skewness parameter. Default is `0.0` (no skew).
tailweight: Tailweight parameter. Default is `1.0` (unchanged tailweight)
distribution: `tf.Distribution`-like instance. Distribution that is
transformed to produce this distribution.
Default is `tfd.Normal(0., 1.)`.
Must be a scalar-batch, scalar-event distribution. Typically
`distribution.reparameterization_type = FULLY_REPARAMETERIZED` or it is
a function of non-trainable parameters. WARNING: If you backprop through
a `SinhArcsinh` sample and `distribution` is not
`FULLY_REPARAMETERIZED` yet is a function of trainable variables, then
the gradient will be incorrect!
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`,
statistics (e.g., mean, mode, variance) use the value "`NaN`" to
indicate the result is undefined. When `False`, an exception is raised
if one or more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
"""
parameters = dict(locals())
with tf.name_scope(name) as name:
dtype = dtype_util.common_dtype([loc, scale, skewness, tailweight],
tf.float32)
self._loc = tensor_util.convert_nonref_to_tensor(loc,
name="loc",
dtype=dtype)
self._scale = tensor_util.convert_nonref_to_tensor(scale,
name="scale",
dtype=dtype)
tailweight = 1. if tailweight is None else tailweight
has_default_skewness = skewness is None
skewness = 0. if has_default_skewness else skewness
self._tailweight = tensor_util.convert_nonref_to_tensor(
tailweight, name="tailweight", dtype=dtype)
self._skewness = tensor_util.convert_nonref_to_tensor(
skewness, name="skewness", dtype=dtype)
batch_shape = distribution_util.get_broadcast_shape(
self._loc, self._scale, self._tailweight, self._skewness)
# Recall, with Z a random variable,
# Y := loc + scale * F(Z),
# F(Z) := Sinh( (Arcsinh(Z) + skewness) * tailweight ) * C
# C := 2 / F_0(2)
# F_0(Z) := Sinh( Arcsinh(Z) * tailweight )
if distribution is None:
distribution = normal.Normal(loc=tf.zeros([], dtype=dtype),
scale=tf.ones([], dtype=dtype),
allow_nan_stats=allow_nan_stats,
validate_args=validate_args)
else:
asserts = distribution_util.maybe_check_scalar_distribution(
distribution, dtype, validate_args)
if asserts:
self._loc = distribution_util.with_dependencies(
asserts, self._loc)
# Make the SAS bijector, 'F'.
f = sinh_arcsinh_bijector.SinhArcsinh(skewness=self._skewness,
tailweight=self._tailweight,
validate_args=validate_args)
# Make the AffineScalar bijector, Z --> loc + scale * Z (2 / F_0(2))
affine = affine_scalar_bijector.AffineScalar(
shift=self._loc,
scale=self._scale,
validate_args=validate_args)
bijector = chain_bijector.Chain([affine, f])
super(SinhArcsinh, self).__init__(distribution=distribution,
bijector=bijector,
batch_shape=batch_shape,
validate_args=validate_args,
name=name)
self._parameters = parameters
def __init__(self, permutation, axis=-1, validate_args=False, name=None):
"""Creates the `Permute` bijector.
Args:
permutation: An `int`-like vector-shaped `Tensor` representing the
permutation to apply to the `axis` dimension of the transformed
`Tensor`.
axis: Scalar `int` `Tensor` representing the dimension over which to
`tf.gather`. `axis` must be relative to the end (reading left to right)
thus must be negative.
Default value: `-1` (i.e., right-most).
validate_args: Python `bool` indicating whether arguments should be
checked for correctness.
name: Python `str`, name given to ops managed by this object.
Raises:
TypeError: if `not dtype_util.is_integer(permutation.dtype)`.
ValueError: if `permutation` does not contain exactly one of each of
`{0, 1, ..., d}`.
NotImplementedError: if `axis` is not known prior to graph execution.
NotImplementedError: if `axis` is not negative.
"""
with tf.name_scope(name or "permute") as name:
axis = tf.convert_to_tensor(axis, name="axis")
if not dtype_util.is_integer(axis.dtype):
raise TypeError("axis.dtype ({}) should be `int`-like.".format(
dtype_util.name(axis.dtype)))
permutation = tf.convert_to_tensor(permutation, name="permutation")
if not dtype_util.is_integer(permutation.dtype):
raise TypeError(
"permutation.dtype ({}) should be `int`-like.".format(
dtype_util.name(permutation.dtype)))
p = tf.get_static_value(permutation)
if p is not None:
if set(p) != set(np.arange(p.size)):
raise ValueError(
"Permutation over `d` must contain exactly one of "
"each of `{0, 1, ..., d}`.")
elif validate_args:
p, _ = tf.math.top_k(-permutation,
k=tf.shape(permutation)[-1],
sorted=True)
permutation = distribution_util.with_dependencies([
assert_util.assert_equal(
-p,
tf.range(tf.size(p)),
message=(
"Permutation over `d` must contain exactly one of "
"each of `{0, 1, ..., d}`.")),
], permutation)
axis_ = tf.get_static_value(axis)
if axis_ is None:
raise NotImplementedError(
"`axis` must be known prior to graph "
"execution.")
elif axis_ >= 0:
raise NotImplementedError(
"`axis` must be relative the rightmost "
"dimension, i.e., negative.")
else:
forward_min_event_ndims = int(np.abs(axis_))
self._permutation = permutation
self._axis = axis
super(Permute, self).__init__(
forward_min_event_ndims=forward_min_event_ndims,
is_constant_jacobian=True,
validate_args=validate_args,
name=name)
def __init__(self,
loc=None,
scale_diag=None,
scale_identity_multiplier=None,
skewness=None,
tailweight=None,
distribution=None,
validate_args=False,
allow_nan_stats=True,
name="VectorSinhArcsinhDiag"):
"""Construct VectorSinhArcsinhDiag distribution on `R^k`.
The arguments `scale_diag` and `scale_identity_multiplier` combine to
define the diagonal `scale` referred to in this class docstring:
```none
scale = diag(scale_diag + scale_identity_multiplier * ones(k))
```
The `batch_shape` is the broadcast shape between `loc` and `scale`
arguments.
The `event_shape` is given by last dimension of the matrix implied by
`scale`. The last dimension of `loc` (if provided) must broadcast with this
Additional leading dimensions (if any) will index batches.
Args:
loc: Floating-point `Tensor`. If this is set to `None`, `loc` is
implicitly `0`. When specified, may have shape `[B1, ..., Bb, k]` where
`b >= 0` and `k` is the event size.
scale_diag: Non-zero, floating-point `Tensor` representing a diagonal
matrix added to `scale`. May have shape `[B1, ..., Bb, k]`, `b >= 0`,
and characterizes `b`-batches of `k x k` diagonal matrices added to
`scale`. When both `scale_identity_multiplier` and `scale_diag` are
`None` then `scale` is the `Identity`.
scale_identity_multiplier: Non-zero, floating-point `Tensor` representing
a scale-identity-matrix added to `scale`. May have shape
`[B1, ..., Bb]`, `b >= 0`, and characterizes `b`-batches of scale
`k x k` identity matrices added to `scale`. When both
`scale_identity_multiplier` and `scale_diag` are `None` then `scale`
is the `Identity`.
skewness: Skewness parameter. floating-point `Tensor` with shape
broadcastable with `event_shape`.
tailweight: Tailweight parameter. floating-point `Tensor` with shape
broadcastable with `event_shape`.
distribution: `tf.Distribution`-like instance. Distribution from which `k`
iid samples are used as input to transformation `F`. Default is
`tfd.Normal(loc=0., scale=1.)`.
Must be a scalar-batch, scalar-event distribution. Typically
`distribution.reparameterization_type = FULLY_REPARAMETERIZED` or it is
a function of non-trainable parameters. WARNING: If you backprop through
a VectorSinhArcsinhDiag sample and `distribution` is not
`FULLY_REPARAMETERIZED` yet is a function of trainable variables, then
the gradient will be incorrect!
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`,
statistics (e.g., mean, mode, variance) use the value "`NaN`" to
indicate the result is undefined. When `False`, an exception is raised
if one or more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
ValueError: if at most `scale_identity_multiplier` is specified.
"""
parameters = dict(locals())
with tf.name_scope(name) as name:
dtype = dtype_util.common_dtype([
loc, scale_diag, scale_identity_multiplier, skewness,
tailweight
], tf.float32)
loc = loc if loc is None else tf.convert_to_tensor(
loc, name="loc", dtype=dtype)
tailweight = 1. if tailweight is None else tailweight
skewness = 0. if skewness is None else skewness
# Recall, with Z a random variable,
# Y := loc + C * F(Z),
# F(Z) := Sinh( (Arcsinh(Z) + skewness) * tailweight )
# F_0(Z) := Sinh( Arcsinh(Z) * tailweight )
# C := 2 * scale / F_0(2)
# Construct shapes and 'scale' out of the scale_* and loc kwargs.
# scale_linop is only an intermediary to:
# 1. get shapes from looking at loc and the two scale args.
# 2. combine scale_diag with scale_identity_multiplier, which gives us
# 'scale', which in turn gives us 'C'.
scale_linop = distribution_util.make_diag_scale(
loc=loc,
scale_diag=scale_diag,
scale_identity_multiplier=scale_identity_multiplier,
validate_args=False,
assert_positive=False,
dtype=dtype)
batch_shape, event_shape = distribution_util.shapes_from_loc_and_scale(
loc, scale_linop)
# scale_linop.diag_part() is efficient since it is a diag type linop.
scale_diag_part = scale_linop.diag_part()
dtype = scale_diag_part.dtype
if distribution is None:
distribution = normal.Normal(loc=tf.zeros([], dtype=dtype),
scale=tf.ones([], dtype=dtype),
allow_nan_stats=allow_nan_stats)
else:
asserts = distribution_util.maybe_check_scalar_distribution(
distribution, dtype, validate_args)
if asserts:
scale_diag_part = distribution_util.with_dependencies(
asserts, scale_diag_part)
# Make the SAS bijector, 'F'.
skewness = tf.convert_to_tensor(skewness,
dtype=dtype,
name="skewness")
tailweight = tf.convert_to_tensor(tailweight,
dtype=dtype,
name="tailweight")
f = sinh_arcsinh_bijector.SinhArcsinh(skewness=skewness,
tailweight=tailweight)
affine = affine_bijector.Affine(shift=loc,
scale_diag=scale_diag_part,
validate_args=validate_args)
bijector = chain_bijector.Chain([affine, f])
super(VectorSinhArcsinhDiag,
self).__init__(distribution=distribution,
bijector=bijector,
batch_shape=batch_shape,
event_shape=event_shape,
validate_args=validate_args,
name=name)
self._parameters = parameters
self._loc = loc
self._scale = scale_linop
self._tailweight = tailweight
self._skewness = skewness
def __init__(self,
loc=None,
covariance_matrix=None,
validate_args=False,
allow_nan_stats=True,
name="MultivariateNormalFullCovariance"):
"""Construct Multivariate Normal distribution on `R^k`.
The `batch_shape` is the broadcast shape between `loc` and
`covariance_matrix` arguments.
The `event_shape` is given by last dimension of the matrix implied by
`covariance_matrix`. The last dimension of `loc` (if provided) must
broadcast with this.
A non-batch `covariance_matrix` matrix is a `k x k` symmetric positive
definite matrix. In other words it is (real) symmetric with all eigenvalues
strictly positive.
Additional leading dimensions (if any) will index batches.
Args:
loc: Floating-point `Tensor`. If this is set to `None`, `loc` is
implicitly `0`. When specified, may have shape `[B1, ..., Bb, k]` where
`b >= 0` and `k` is the event size.
covariance_matrix: Floating-point, symmetric positive definite `Tensor` of
same `dtype` as `loc`. The strict upper triangle of `covariance_matrix`
is ignored, so if `covariance_matrix` is not symmetric no error will be
raised (unless `validate_args is True`). `covariance_matrix` has shape
`[B1, ..., Bb, k, k]` where `b >= 0` and `k` is the event size.
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`,
statistics (e.g., mean, mode, variance) use the value "`NaN`" to
indicate the result is undefined. When `False`, an exception is raised
if one or more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
ValueError: if neither `loc` nor `covariance_matrix` are specified.
"""
parameters = dict(locals())
# Convert the covariance_matrix up to a scale_tril and call MVNTriL.
with tf.name_scope(name) as name:
with tf.name_scope("init"):
dtype = dtype_util.common_dtype([loc, covariance_matrix],
tf.float32)
loc = loc if loc is None else tf.convert_to_tensor(
loc, name="loc", dtype=dtype)
if covariance_matrix is None:
scale_tril = None
else:
covariance_matrix = tf.convert_to_tensor(
covariance_matrix,
name="covariance_matrix",
dtype=dtype)
if validate_args:
covariance_matrix = distribution_util.with_dependencies(
[
assert_util.assert_near(
covariance_matrix,
tf.linalg.matrix_transpose(
covariance_matrix),
message="Matrix was not symmetric")
], covariance_matrix)
# No need to validate that covariance_matrix is non-singular.
# LinearOperatorLowerTriangular has an assert_non_singular method that
# is called by the Bijector.
# However, cholesky() ignores the upper triangular part, so we do need
# to separately assert symmetric.
scale_tril = tf.linalg.cholesky(covariance_matrix)
super(MultivariateNormalFullCovariance,
self).__init__(loc=loc,
scale_tril=scale_tril,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
name=name)
self._parameters = parameters
def __init__(self,
df,
scale_operator,
input_output_cholesky=False,
validate_args=False,
allow_nan_stats=True,
name=None):
"""Construct Wishart distributions.
Args:
df: `float` or `double` tensor, the degrees of freedom of the
distribution(s). `df` must be greater than or equal to `k`.
scale_operator: `float` or `double` instance of `LinearOperator`.
input_output_cholesky: Python `bool`. If `True`, functions whose input or
output have the semantics of samples assume inputs are in Cholesky form
and return outputs in Cholesky form. In particular, if this flag is
`True`, input to `log_prob` is presumed of Cholesky form and output from
`sample`, `mean`, and `mode` are of Cholesky form. Setting this
argument to `True` is purely a computational optimization and does not
change the underlying distribution; for instance, `mean` returns the
Cholesky of the mean, not the mean of Cholesky factors. The `variance`
and `stddev` methods are unaffected by this flag.
Default value: `False` (i.e., input/output does not have Cholesky
semantics).
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`, statistics
(e.g., mean, mode, variance) use the value "`NaN`" to indicate the
result is undefined. When `False`, an exception is raised if one or
more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
TypeError: if scale is not floating-type
TypeError: if scale.dtype != df.dtype
ValueError: if df < k, where scale operator event shape is
`(k, k)`
"""
parameters = dict(locals())
self._input_output_cholesky = input_output_cholesky
with tf.name_scope(name) as name:
with tf.name_scope("init"):
if not dtype_util.is_floating(scale_operator.dtype):
raise TypeError(
"scale_operator.dtype=%s is not a floating-point type"
% scale_operator.dtype)
if not scale_operator.is_square:
print(scale_operator.to_dense().eval())
raise ValueError("scale_operator must be square.")
self._scale_operator = scale_operator
self._df = tf.convert_to_tensor(df,
dtype=scale_operator.dtype,
name="df")
dtype_util.assert_same_float_dtype(
[self._df, self._scale_operator])
if tf.compat.dimension_value(
self._scale_operator.shape[-1]) is None:
self._dimension = tf.cast(
self._scale_operator.domain_dimension_tensor(),
dtype=self._scale_operator.dtype,
name="dimension")
else:
self._dimension = tf.convert_to_tensor(
tf.compat.dimension_value(
self._scale_operator.shape[-1]),
dtype=self._scale_operator.dtype,
name="dimension")
df_val = tf.get_static_value(self._df)
dim_val = tf.get_static_value(self._dimension)
if df_val is not None and dim_val is not None:
df_val = np.asarray(df_val)
if not df_val.shape:
df_val = [df_val]
if np.any(df_val < dim_val):
raise ValueError(
"Degrees of freedom (df = %s) cannot be less than "
"dimension of scale matrix (scale.dimension = %s)"
% (df_val, dim_val))
elif validate_args:
assertions = assert_util.assert_less_equal(
self._dimension,
self._df,
message=("Degrees of freedom (df = %s) cannot be "
"less than dimension of scale matrix "
"(scale.dimension = %s)" %
(self._dimension, self._df)))
self._df = distribution_util.with_dependencies(
[assertions], self._df)
super(_WishartLinearOperator, self).__init__(
dtype=self._scale_operator.dtype,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
reparameterization_type=reparameterization.FULLY_REPARAMETERIZED,
parameters=parameters,
name=name)