def test_invalid_file_upload_should_return_400(self):
upload = MockFileStorage()
upload.file = StringIO.StringIO("upload me!")
upload.filename = "file.unvalid_extension"
self.complete_params["file"] = upload
request = testing.DummyRequest(post=self.complete_params)
request.context = testing.DummyResource()
request.session = {"email": "*****@*****.**", "username": "******"}
response = upload_file(request.context, request)
self.assertEqual(response.status_code, 400)
self.assertEqual(json.loads(response.body), {"error": "File extension is invalid"})
def test_invalid_pmids_should_return_400(self):
upload = MockFileStorage()
upload.file = StringIO.StringIO("upload me!")
upload.filename = "file.txt"
self.complete_params["file"] = upload
self.complete_params["pmids"] = "invalid_pmid"
request = testing.DummyRequest(post=self.complete_params)
request.context = testing.DummyResource()
request.session = {"email": "*****@*****.**", "username": "******"}
response = upload_file(request.context, request)
self.assertEqual(response.status_code, 400)
self.assertEqual(json.loads(response.body), {"error": "PMIDs must be integer numbers. You sent: invalid_pmid"})
def test_valid_pmids_but_inexistent_should_return_400(self, mock_search):
upload = MockFileStorage()
upload.file = StringIO.StringIO("upload me!")
upload.filename = "file.txt"
self.complete_params["file"] = upload
self.complete_params["pmids"] = "1234"
mock_search.return_value = MockQuery(None)
request = testing.DummyRequest(post=self.complete_params)
request.context = testing.DummyResource()
request.session = {"email": "*****@*****.**", "username": "******"}
response = upload_file(request.context, request)
self.assertEqual(response.status_code, 400)
self.assertEqual(json.loads(response.body), {"error": "Nonexistent PMID(s): 1234"})
def test_file_already_upload_should_return_400(
self, mock_filepath, mock_topic, mock_keywords, mock_references, mock_format, mock_file
):
upload = MockFileStorage()
upload.file = StringIO.StringIO("upload me!")
upload.filename = "file.txt"
self.complete_params["file"] = upload
self.complete_params["display_name"] = "file.txt"
request = testing.DummyRequest(post=self.complete_params)
request.context = testing.DummyResource()
request.session = {"email": "*****@*****.**", "username": "******"}
response = upload_file(request.context, request)
self.assertEqual(response.status_code, 400)
self.assertEqual(json.loads(response.body), {"error": "Upload error: File file.txt already exists."})
def test_file_should_be_saved_and_uploaded(
self,
mock_session,
mock_filepath,
mock_topic,
mock_keywords,
mock_references,
mock_format,
mock_file,
mock_refs,
mock_keys,
mock_save,
mock_tasks,
mock_transaction,
):
upload = MockFileStorage()
upload.file = StringIO.StringIO("upload me!")
upload.filename = "file.txt"
topic = factory.EdamFactory.build()
format = factory.EdamFactory.build()
filepath = factory.FilepathFactory.build()
mock_topic.return_value = topic
mock_format.return_value = format
mock_filepath.return_value = filepath
self.complete_params["file"] = upload
self.complete_params["display_name"] = "file.txt"
self.complete_params["file_date"] = "2016-03-18 14:09:10"
request = testing.DummyRequest(post=self.complete_params)
request.context = testing.DummyResource()
request.session = {"email": "*****@*****.**", "username": "******"}
response = upload_file(request.context, request)
fdb = Filedbentity(
md5sum=None,
previous_file_name=self.complete_params["previous_file_name"],
topic_id=topic.edam_id,
format_id=format.edam_id,
file_date=self.complete_params["file_date"],
is_public=self.complete_params["is_public"],
is_in_spell=self.complete_params["for_spell"],
is_in_browser=self.complete_params["for_browser"],
filepath_id=filepath.filepath_id,
readme_url=self.complete_params["readme_name"],
file_extension=self.complete_params["extension"],
# DBentity params
format_name=self.complete_params["display_name"],
display_name=self.complete_params["display_name"],
s3_url=None,
source_id=339,
dbentity_status=self.complete_params["status"],
)
self.assertTrue(mock_session.add.called_with(fdb))
self.assertTrue(mock_session.flush.called)
self.assertTrue(mock_session.refresh.called_with(fdb))
self.assertTrue(mock_transaction.commit.called)
self.assertTrue(mock_save.called)
mock_tasks.assert_called_with(
os.path.join("/tmp", upload.filename),
None,
self.complete_params["extension"],
os.environ["S3_ACCESS_KEY"],
os.environ["S3_SECRET_KEY"],
os.environ["S3_BUCKET"],
)
self.assertEqual(response.status_code, 200)