Python testdata_stream Examples

Example #1

 def examples(self):
     files = [
         testdata_stream("ssearch/ssearch_out.txt"),
         testdata_stream("ssearch/ssearch_out_compact.txt"),
         testdata_stream("ssearch/fasta_out_compact.txt"),
         testdata_stream("ssearch/ssearch_out_compact2_dbvdb.txt"),
         testdata_stream("ssearch/ssearch_out_compact_dbvdb.txt"),
     ]
     return files

Example #2

File: test_ssearch_io.py Project: SaswatiSadual/NPLB

 def examples(self) :
     files = [
         testdata_stream("ssearch/ssearch_out.txt"),        
         testdata_stream("ssearch/ssearch_out_compact.txt"),
         testdata_stream("ssearch/fasta_out_compact.txt"),
         testdata_stream("ssearch/ssearch_out_compact2_dbvdb.txt"),
         testdata_stream("ssearch/ssearch_out_compact_dbvdb.txt"),    
     ]
     return files

Example #3

File: test_ssearch_io.py Project: SaswatiSadual/NPLB

 def test_scan(self) :
     files = [
         testdata_stream("ssearch/xbt001.xml"),        
         testdata_stream("ssearch/xbt002.xml"), 
         testdata_stream("ssearch/xbt003.xml"), 
         testdata_stream("ssearch/xbt004.xml"), 
         testdata_stream("ssearch/xbt005.xml"), 
         testdata_stream("ssearch/ssearch_out.txt"),        
         testdata_stream("ssearch/ssearch_out_compact.txt"),
         testdata_stream("ssearch/fasta_out_compact.txt"),
         testdata_stream("ssearch/ssearch_out_compact2_dbvdb.txt"),
         testdata_stream("ssearch/ssearch_out_compact_dbvdb.txt"),    
     ]
     results = [read(f) for f in files]
     self.assertEquals( len(files), len(results) )

Example #4

File: test_ssearch_io.py Project: snehamitra/NPLB

 def test_scan(self):
     files = [
         testdata_stream("ssearch/xbt001.xml"),
         testdata_stream("ssearch/xbt002.xml"),
         testdata_stream("ssearch/xbt003.xml"),
         testdata_stream("ssearch/xbt004.xml"),
         testdata_stream("ssearch/xbt005.xml"),
         testdata_stream("ssearch/ssearch_out.txt"),
         testdata_stream("ssearch/ssearch_out_compact.txt"),
         testdata_stream("ssearch/fasta_out_compact.txt"),
         testdata_stream("ssearch/ssearch_out_compact2_dbvdb.txt"),
         testdata_stream("ssearch/ssearch_out_compact_dbvdb.txt"),
     ]
     results = [read(f) for f in files]
     self.assertEquals(len(files), len(results))

Example #5

 def examples(self):
     files = [
         testdata_stream("ssearch/xbt001.xml"),
         testdata_stream("ssearch/xbt002.xml"),
         testdata_stream("ssearch/xbt003.xml"),
         testdata_stream("ssearch/xbt004.xml"),
         testdata_stream("ssearch/xbt005.xml"),
         testdata_stream("ssearch/megablast.xml"),
     ]
     return files

Example #6

File: test_ssearch_io.py Project: SaswatiSadual/NPLB

 def examples(self) :
     files = [
         testdata_stream("ssearch/xbt001.xml"),        
         testdata_stream("ssearch/xbt002.xml"), 
         testdata_stream("ssearch/xbt003.xml"), 
         testdata_stream("ssearch/xbt004.xml"), 
         testdata_stream("ssearch/xbt005.xml"), 
         testdata_stream("ssearch/megablast.xml"), 
     ]
     return files