def testAttributeGroup(self):
self.assertTrue(testIt(simpleAttributeGroup.parseString, '{74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17}'))
self.assertTrue(testIt(simpleAttributeGroup.parseString, '( {74400008 <= #17} )'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17},{74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17}{74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17}{74400008 <= #17}{74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17} OR {74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17} AND {74400008 <= #17}'))
self.assertTrue(testIt(attributeGroup.parseString, '{74400008 <= #17}({74400008 <= #17} AND {74400008 <= #17})', fail=True))
def testConceptReference(self):
self.assertEqual(
123456,
conceptReference.parseString('123456', parseAll=True)[0].sctid)
self.assertEqual(123456,
conceptReference.parseString('123456')[0].sctid)
self.assertTrue(testIt(term.parseString, 'abc'))
self.assertTrue(testIt(term.parseString, 'a'))
self.assertTrue(testIt(term.parseString, 'a b cè'))
self.assertTrue(testIt(term.parseString, ' ', fail=True))
self.assertTrue(testIt(term.parseString, 'a|b', fail=True))
self.assertTrue(
testIt(conceptReference.parseString, '123456 | Something |'))
res = conceptReference.parseString('123456 | Something | ',
parseAll=True)[0]
self.assertEqual('Something', res.term)
res = conceptReference.parseString('123456 | Something good | ',
parseAll=True)[0]
self.assertEqual(123456, res.sctid)
self.assertEqual('Something good', res.term)
self.assertRaises(ParseException,
conceptReference.parseString,
'123456 | embedded | bar |',
parseAll=True)
self.assertTrue(
testIt(conceptReference.parseString,
'404684003 |clinical finding|'))
def testx(self):
self.assertTrue(testIt(attributeSet.parseString, '74400008 = "abc"'))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") or (74400008 = "def1") '))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") or (74400008 = "def2") '))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") or (74400008 = "def3") '))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") and (74400008 = "def4") '))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") and 74400008 = "def5" '))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") , 74400008 = "def6" '))
def test2(self):
try:
self.assertTrue(testIt(attributeSet.parseString, '363698007 |finding site| = << 39057004 |pulmonary valve structure|'))
self.assertTrue(testIt(attributeSet.parseString, '116676008 |associated morphology| = << 415582006 |stenosis|'))
# TODO: the item below does not parse, but I'm not sure it should...
# attributeSet = attribute *(conjunction attribute) -->
# attribute = attributeName "=" expressionConstraintValue 363698007 |finding site| =
# expressionConstraintValue = simpleExpressionConstraint
# simpleExpressionConstraint = conceptReference conjunction simpleEpressionConstraint :: |pulmonary valve structure|, 116676008 |associated morphology|
self.assertTrue(testIt(attributeSet.parseString, '''363698007 |finding site| = << 39057004 |pulmonary valve structure|, 116676008 |associated morphology| = << 415582006 |stenosis|'''))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc")'))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = "abc") , 74400009 <= #2'))
self.assertTrue(testIt(attributeSet.parseString, ' 74400008 = "abc" , 74400009 <= #2'))
self.assertTrue(testIt(attributeSet.parseString, ' 74400008 = "abc" and 74400009 <= #2'))
self.assertTrue(testIt(attributeSet.parseString, ' (74400008 = "abc") or 74400009 <= #2'))
except ParseException as e:
print(fmtException(e))
self.assertTrue(False)
def test_attributeSet(self):
self.assertTrue(testIt(attributeSet.parseString, '74400008 <= #17'))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 <= #17)'))
def test_attributeConcreteValue(self):
self.assertTrue(testIt(attribute.parseString, '74400008 <= #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 = #0.000413'))
self.assertTrue(testIt(attribute.parseString, '74400008 = #-0.001'))
self.assertTrue(testIt(attribute.parseString, '74400008 < #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 >= #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 > #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 != #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 ! = #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 not= #17'))
self.assertTrue(testIt(attribute.parseString, '74400008 not = #17'))
self.assertRaises(ParseException, attribute.parseString,'74400008 not < #17', parseAll=True )
self.assertTrue(testIt(attribute.parseString, '74400008 = "abc"'))
self.assertTrue(testIt(attribute.parseString, '74400008 = " ab c "'))
def test_attributeExpression(self):
self.assertTrue(testIt(attribute.parseString, '< 74400008 |appendicitis| = < 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, '< 74400008 |appendicitis| = >> 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, ' 74400008 |appendicitis| = << 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, ' 744000008 |appendicitis| = > 74400008 |appendicitis| '))
def test_attribute(self):
self.assertTrue(testIt(attribute.parseString, '74400008 = 74400008'))
self.assertTrue(testIt(attribute.parseString, '74400008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, '< 74400008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, '<< 74400008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, 'descendantsof 74400008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, 'descendantsorselfof 744000008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, 'reverseof descendantsorselfof 744000008 |appendicitis| = 74400008 |appendicitis| '))
self.assertTrue(testIt(attribute.parseString, 'reverseof 744000008 |appendicitis| = 74400008 |appendicitis| '))
self.assertRaises(ParseException, attribute.parseString, '<< reverseof 744000008 = 74400008 ', parseAll=True)
self.assertTrue(testIt(attribute.parseString, '[0..1]74400008 = 74400008'))
self.assertTrue(testIt(attribute.parseString, '[0..*]74400008 = 74400008'))
self.assertTrue(testIt(attribute.parseString, '[0..many]74400008 = 74400008'))
self.assertTrue(testIt(attribute.parseString, '[1..1]74400008 = 74400008'))
self.assertTrue(testIt(attributeSet.parseString, '(74400008 = 74400008)'))
def test_simple_expression_set2(self):
self.assertTrue(
testIt(simpleConstraintSet.parseString, '123456 OR 123466'))
def test_simple_expression_set(self):
self.assertTrue(
testIt(conceptReference.parseString,
'404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'<404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'descendantsOf 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'<< 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'descendantsOrSelfOf 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'> 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'ancestorsOf 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'>> 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'ancestorsOrSelfOf 404684003 |clinical finding|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'^ 700043003 |example problem list subset|'))
self.assertTrue(
testIt(simpleConstraintSet.parseString,
'membersof 700043003 |example problem list subset|'))
self.assertTrue(
testIt(
simpleConstraintSet.parseString,
'^^ 1111000000132 |medication reference sets reference set|'))
self.assertTrue(
testIt(
simpleConstraintSet.parseString,
'membersof membersof 1111000000132 |medication reference sets reference set|'
))
self.assertTrue(
testIt(
simpleConstraintSet.parseString,
'not << membersof membersof 1111000000132 |medication reference sets reference set|'
))
self.assertTrue(testIt(simpleConstraintSet.parseString, 'not 123456'))
self.assertTrue(
testIt(
simpleConstraintSet.parseString,
'123456 OR < 123466 AND 1239999 | foo | , 74400008 | bar |'))