def testValidateBadValues(self):
for cls in protocol.getProtocolClasses():
instance = self.getTypicalInstance(cls)
jsonDict = instance.toJsonDict()
self.assertFalse(cls.validate(None))
self.assertFalse(cls.validate([]))
self.assertFalse(cls.validate(1))
# setting values to bad values should be invalid
for key in jsonDict.keys():
dct = dict(jsonDict)
dct[key] = self.getInvalidValue(cls, key)
self.assertFalse(cls.validate(dct))
for c in utils.powerset(jsonDict.keys(), 10):
if len(c) > 0:
dct = dict(jsonDict)
for f in c:
dct[f] = self.getInvalidValue(cls, f)
self.assertFalse(cls.validate(dct))
def testValidateBadValues(self):
for cls in protocol.getProtocolClasses():
instance = self.getTypicalInstance(cls)
jsonDict = instance.toJsonDict()
self.assertFalse(cls.validate(None))
self.assertFalse(cls.validate([]))
self.assertFalse(cls.validate(1))
# setting values to bad values should be invalid
for key in jsonDict.keys():
dct = dict(jsonDict)
dct[key] = self.getInvalidValue(cls, key)
self.assertFalse(cls.validate(dct))
for c in utils.powerset(jsonDict.keys(), 10):
if len(c) > 0:
dct = dict(jsonDict)
for f in c:
dct[f] = self.getInvalidValue(cls, f)
self.assertFalse(cls.validate(dct))
def testSearchCallSetIdsSystematic(self):
for sampleIds in utils.powerset(self.vcfSamples, maxSets=10):
self._verifyVariantsCallSetIds(list(sampleIds))
def testSearchCallSetIdsSystematic(self):
for sampleIds in utils.powerset(self.vcfSamples, maxSets=10):
# TODO remove this for protocol 0.6
if len(sampleIds) == 0:
sampleIds = self.vcfSamples
self._verifyVariantsCallSetIds(None, list(sampleIds))
def testSearchCallSetIdsSystematic(self):
for sampleIds in utils.powerset(self.vcfSamples, maxSets=10):
self._verifyVariantsCallSetIds(list(sampleIds))
def testSearchCallSetIdsSystematic(self):
for sampleIds in utils.powerset(self.vcfSamples, maxSets=10):
# TODO remove this for protocol 0.6
if len(sampleIds) == 0:
sampleIds = self.vcfSamples
self._verifyVariantsCallSetIds(None, list(sampleIds))
