def metric_fn(label_ids, logits, trans):
# 首先对结果进行维特比解码
# crf 解码
weight = tf.sequence_mask(FLAGS.max_seq_length)
precision = tf_metrics.precision(label_ids, pred_ids, num_labels, [2, 3, 4, 5, 6, 7], weight)
recall = tf_metrics.recall(label_ids, pred_ids, num_labels, [2, 3, 4, 5, 6, 7], weight)
f = tf_metrics.f1(label_ids, pred_ids, num_labels, [2, 3, 4, 5, 6, 7], weight)
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def metric_fn(label_ids, pred_ids, num_labels):
# predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
pos_indices = [id for id in range(2, num_labels - 3)]
# pos_indices = [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
# 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]
# pos_indices = [2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
precision = tf_metrics.precision(
label_ids, pred_ids, num_labels, pos_indices, average="micro")
recall = tf_metrics.recall(
label_ids, pred_ids, num_labels, pos_indices, average="micro")
f = tf_metrics.f1(label_ids, pred_ids,
num_labels, pos_indices, average="micro")
# hook_dict['precision'] = precision
# hook_dict['recall'] = recall
# hook_dict['f'] = f
# tf.summary.scalar('precision', precision)
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def metric_fn(per_example_loss, label_ids, logits):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
precision = tf_metrics.precision(label_ids,
predictions,
11, [2, 3, 4, 5, 6, 7],
average="macro")
recall = tf_metrics.recall(label_ids,
predictions,
11, [2, 3, 4, 5, 6, 7],
average="macro")
f = tf_metrics.f1(label_ids,
predictions,
11, [2, 3, 4, 5, 6, 7],
average="macro")
#
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
#"eval_loss": loss,
}
def metric_fn(per_example_loss, label_ids, logits,
is_real_example):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
recall = tf_metrics.recall(label_ids,
predictions,
num_classes=num_labels,
average='micro')
precision = tf_metrics.precision(label_ids,
predictions,
num_classes=num_labels,
average='micro')
f1 = tf_metrics.f1(label_ids,
predictions,
num_classes=num_labels,
average='micro')
loss = tf.metrics.mean(values=per_example_loss,
weights=is_real_example)
return {
"eval_recall": recall,
'eval_precision': precision,
'eval_f1': f1,
"eval_loss": loss,
}
def eval_phase(label_ids, pred_ids, num_labels):
# 首先对结果进行维特比解码
# crf 解码
eval_list = []
assert True == os.path.exists(
os.path.join(FLAGS.output_dir, "eval_ids_list.txt"))
list_file = open(os.path.join(FLAGS.output_dir, "eval_ids_list.txt"), 'r')
contents = list_file.readlines()
for item in contents:
eval_list.append(int(
item.strip())) ## 记得把字符转回来int类型，后面的评测都是基于int类型的list的
assert 0 < len(eval_list)
print("eval_list:", eval_list)
weight = tf.sequence_mask(FLAGS.max_seq_length)
precision = tf_metrics.precision(label_ids, pred_ids, num_labels,
eval_list, weight)
tf.summary.scalar("precision", precision[1])
recall = tf_metrics.recall(label_ids, pred_ids, num_labels, eval_list,
weight)
tf.summary.scalar("recall", recall[1])
f = tf_metrics.f1(label_ids, pred_ids, num_labels, eval_list, weight)
tf.summary.scalar("f1", f[1])
return (precision, recall, f)
def metric_fn(per_example_loss, label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
pos_indices = list(range(2, num_labels - 3))
precision = tf_metrics.precision(label_ids,
predictions,
num_labels,
pos_indices,
average="macro")
recall = tf_metrics.recall(label_ids,
predictions,
num_labels,
pos_indices,
average="macro")
f = tf_metrics.f1(label_ids,
predictions,
num_labels,
pos_indices,
average="macro")
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
}
def metric_fn(per_example_loss, label_ids, logits):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
# labels = []
# for i, x in enumerate()
predict_labels = []
# for i in range(1, num_labels - 4):
# predict_labels.append(i)
# precision = tf_metrics.precision(label_ids, predictions, num_labels, predict_labels, average="macro")
# recall = tf_metrics.recall(label_ids, predictions, num_labels, predict_labels, average="macro")
# f = tf_metrics.f1(label_ids, predictions, num_labels, predict_labels, average="macro")
precision = tf_metrics.precision(label_ids, predictions, num_labels, average="macro")
recall = tf_metrics.recall(label_ids, predictions, num_labels, average="macro")
f = tf_metrics.f1(label_ids, predictions, num_labels, average="macro")
#
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def metric_fn(label_ids, logits, trans):
# 首先对结果进行维特比解码
# crf 解码
weight = tf.sequence_mask(FLAGS.max_seq_length)
# print(label_ids.get_shape()) #[?,128]
# print(pred_ids.get_shape()) #[64,128]
# print(num_labels) #17
# print(weight.get_shape()) #[128,]
precision = tf_metrics.precision(label_ids, pred_ids,
num_labels,
[2, 3, 4, 5, 6, 7], weight)
recall = tf_metrics.recall(label_ids, pred_ids, num_labels,
[2, 3, 4, 5, 6, 7], weight)
f = tf_metrics.f1(label_ids, pred_ids, num_labels,
[2, 3, 4, 5, 6, 7], weight)
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def metric_fn(per_example_loss, label_ids, logits):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
n_class = [i for i in range(len(LABELS) - 2)]
precision = tf_metrics.precision(label_ids,
predictions,
len(LABELS) + 1, [1, 2, 3],
average="macro")
recall = tf_metrics.recall(label_ids,
predictions,
len(LABELS) + 1, [1, 2, 3],
average="macro")
f = tf_metrics.f1(label_ids,
predictions,
len(LABELS) + 1, [1, 2, 3],
average="macro")
#
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def metric_fn(per_example_loss, label_ids, logits):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
print(logits)
print(predictions)
print(label_ids)
#label_ids_array = label_ids.eval()
#predictions_array = predictions.eval()
#predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
#print(predictions_array)
accuracy = tf.metrics.accuracy(labels=label_ids,
predictions=predictions)
precision = tf_metrics.precision(
label_ids,
predictions,
19, [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15],
average="micro")
recall = tf_metrics.recall(
label_ids,
predictions,
19, [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15],
average="micro")
f = tf_metrics.f1(
label_ids,
predictions,
19, [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15],
average="micro")
#class_repo = classification_report(label_ids_array, predictions_array )
return {
"eval_accuracy": accuracy,
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_class_repo":class_repo,
#"eval_loss": loss,
}
def metric_fn(per_example_loss, label_ids, logits,
is_real_example):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
# print("predictions shape: " + str(predictions.get_shape().as_list()))
# print("label_ids shape: " + str(label_ids.get_shape().as_list()))
# print("is_real_example shape: " + str(is_real_example.get_shape().as_list()))
precision = tf_metrics.precision(label_ids,
predictions,
num_labels, [2, 3, 4, 5],
average="macro")
recall = tf_metrics.recall(label_ids,
predictions,
num_labels, [2, 3, 4, 5],
average="macro")
f = tf_metrics.f1(label_ids,
predictions,
num_labels, [2, 3, 4, 5],
average="macro")
accuracy = tf.metrics.accuracy(labels=label_ids,
predictions=predictions,
weights=is_real_example)
loss = tf.metrics.mean(values=per_example_loss,
weights=is_real_example)
# precision = tf_metrics.precision(label_ids, predictions, 11, [2, 3, 4, 5, 6, 7], average="macro")
# recall = tf_metrics.recall(label_ids, predictions, 11, [2, 3, 4, 5, 6, 7], average="macro")
# f = tf_metrics.f1(label_ids, predictions, 11, [2, 3, 4, 5, 6, 7], average="macro")
#
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
"eval_accuracy": accuracy,
"eval_loss": loss,
}
def model_fn(features, labels, mode, params):
training = (mode == tf.estimator.ModeKeys.TRAIN)
input_ids = features["text"]
author_id = features["author"]
category_ids = features["categories"]
label_id = features["label"]
cnn = CnnModel(params, input_ids, author_id, category_ids, training)
squeeze_label_ids = tf.squeeze(label_id, axis=1)
logits, predict_label_ids, loss = cnn.build_network(squeeze_label_ids,)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
#words = tf.contrib.lookup.index_to_string_table_from_file(params['vocab'])
#input_words = words.lookup(tf.to_int64(input_ids))
predictions = {
'true_label_ids': squeeze_label_ids,
'predict_label_ids': predict_label_ids,
}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
train_op = optimization.create_optimizer(loss, params['learning_rate'], params['train_steps'], params['num_warmup_steps'])
if mode == tf.estimator.ModeKeys.EVAL:
# Metrics
metrics = {
'acc': tf.metrics.accuracy(squeeze_label_ids, predict_label_ids),
# 分别计算各个类的P, R 然后按类求平均值
'precision': precision(squeeze_label_ids, predict_label_ids, params['label_size'], average='macro'),
'recall': recall(squeeze_label_ids, predict_label_ids, params['label_size'], average='macro'),
'f1': f1(squeeze_label_ids, predict_label_ids, params['label_size'], average='macro'),
}
return tf.estimator.EstimatorSpec(mode, loss=loss, eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
return tf.estimator.EstimatorSpec(mode, loss=loss, train_op=train_op)
def metric_fn(label_ids, logits, trans):
# 首先对结果进行维特比解码
# crf 解码
weight = tf.sequence_mask(max_seq_length)
# 0对应填充，1对应SEP， 是命名实体的当做正例（多分类时需要指定的），后面索引对应label_ids的
# precision = TP / (TP + FP) # 预测为正的样本中实际正样本的比例
# recall = TP / (TP + FN) # 实际正样本中预测为正的比例
# accuracy = (TP + TN) / (P + N)
# F1-score = 2 / [(1 / precision) + (1 / recall)]
precision = tf_metrics.precision(label_ids, pred_ids,
num_labels,
[2, 3, 4, 5, 6, 7], weight)
recall = tf_metrics.recall(label_ids, pred_ids, num_labels,
[2, 3, 4, 5, 6, 7], weight)
f1 = tf_metrics.f1(label_ids, pred_ids, num_labels,
[2, 3, 4, 5, 6, 7], weight)
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f1": f1,
# "eval_loss": loss,
}
def metric_fn(seq_length, max_len, label_ids, pred_ids):
indices = [1, 2] # indice参数告诉评估矩阵评估哪些标签
# Metrics
weights = tf.sequence_mask(seq_length, maxlen=max_len)
tf.logging.info("****shape in metrics***")
label_ids_metric = tf.argmax(label_ids, 1)
tf.logging.info(label_ids_metric.shape)
tf.logging.info(pred_ids.shape)
metrics = {
'acc':
tf.metrics.accuracy(label_ids_metric, pred_ids),
'precision':
precision(label_ids_metric, pred_ids, params['num_labels'],
indices),
'recall':
recall(label_ids_metric, pred_ids, params['num_labels'],
indices),
'f1':
f1(label_ids_metric, pred_ids, params['num_labels'],
indices),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
return eval_metrics
def metric_fn(label_ids, predicted_labels, input_mask, num_labels):
label_ids = tf.boolean_mask(label_ids, input_mask)
predicted_labels = tf.boolean_mask(predicted_labels,
input_mask)
precision = tf_metrics.precision(label_ids,
predicted_labels,
num_labels, [1, 2, 3],
average="macro")
recall = tf_metrics.recall(label_ids,
predicted_labels,
num_labels, [1, 2, 3],
average="macro")
f1 = tf_metrics.f1(label_ids,
predicted_labels,
num_labels, [1, 2, 3],
average="macro")
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f1
}
def metric_fn(per_example_loss, label_ids, logits):
# def metric_fn(label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
# 评估函数，计算准确率、召回率、F1，假如改类别的话，下方数字需要修改，10是总类别数，1-6是有用的类别。B、I、E，
# 具体见 tf.metrics里的函数
precision = tf_metrics.precision(label_ids,
predictions,
10, [1, 2, 3, 4, 5, 6],
average="macro")
recall = tf_metrics.recall(label_ids,
predictions,
10, [1, 2, 3, 4, 5, 6],
average="macro")
f = tf_metrics.f1(label_ids,
predictions,
10, [1, 2, 3, 4, 5, 6],
average="macro")
return {
"eval_precision": precision,
"eval_recall": recall,
"eval_f": f,
# "eval_loss": loss,
}
def model_fn(features, labels, mode, params):
if isinstance(features, dict):
features = features['words'], features['nwords']
dropout = params['dropout']
words, nwords = features
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
word_ids = vocab_words.lookup(words)
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.] * params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
embeddings = tf.nn.embedding_lookup(variable, word_ids)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
t = tf.transpose(embeddings, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
dense_layer = tf.layers.Dense(num_tags)
logits = dense_layer(output)
crf_params = tf.get_variable("crf", [num_tags, num_tags], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
##########
epsilon = 5
perturbed = _add_perturbation(embeddings, loss, epsilon)
t = tf.transpose(perturbed, perm=[1, 0, 2])
output_fw1, _1 = lstm_cell_fw(t,
dtype=tf.float32,
sequence_length=nwords)
output_bw1, _1 = lstm_cell_bw(t,
dtype=tf.float32,
sequence_length=nwords)
output1 = tf.concat([output_fw1, output_bw1], axis=-1)
output1 = tf.transpose(output1, perm=[1, 0, 2])
output1 = tf.layers.dropout(output1, rate=dropout, training=training)
logits1 = dense_layer(output1)
log_likelihood1, _1 = tf.contrib.crf.crf_log_likelihood(
logits1, tags, nwords, crf_params)
adv_loss = tf.reduce_mean(-log_likelihood1)
loss += adv_loss
##########
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices, weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']),
(features['jasos'], features['njasos']))
# Read vocabs and inputs
(words, nwords), (chars, nchars), (jasos, njasos) = features
dropout = params['dropout']
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['chars'], num_oov_buckets=params['num_oov_buckets'])
vocab_jasos = tf.contrib.lookup.index_table_from_file(
params['jasos'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
with Path(params['chars']).open(encoding="utf8") as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
with Path(params['jasos']).open(encoding="utf8") as f:
num_jasos = sum(1 for _ in f) + params['num_oov_buckets']
# jaos embedding
jaso_ids = vocab_jasos.lookup(jasos)
variable = tf.get_variable('jasos_embeddings',
[num_jasos, params['dim_chars']], tf.float32)
jaso_embeddings = tf.nn.embedding_lookup(variable, jaso_ids)
jaso_embeddings = tf.layers.dropout(jaso_embeddings,
rate=dropout,
training=training)
# Char LSTM
dim_words = tf.shape(jaso_embeddings)[1]
dim_chars = tf.shape(jaso_embeddings)[2]
flat = tf.reshape(jaso_embeddings, [-1, dim_chars, params['dim_chars']])
t = tf.transpose(flat, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
_, (_, output_fw) = lstm_cell_fw(t,
dtype=tf.float32,
sequence_length=tf.reshape(nchars, [-1]))
_, (_, output_bw) = lstm_cell_bw(t,
dtype=tf.float32,
sequence_length=tf.reshape(nchars, [-1]))
output = tf.concat([output_fw, output_bw], axis=-1)
jaso_embeddings = tf.reshape(output, [-1, dim_words, 50])
# Char Embeddings
char_ids = vocab_chars.lookup(chars)
variable = tf.get_variable('chars_embeddings',
[num_chars, params['dim_chars']], tf.float32)
char_embeddings = tf.nn.embedding_lookup(variable, char_ids)
char_embeddings = tf.layers.dropout(char_embeddings,
rate=dropout,
training=training)
# Char LSTM
dim_words = tf.shape(char_embeddings)[1]
dim_chars = tf.shape(char_embeddings)[2]
flat = tf.reshape(char_embeddings, [-1, dim_chars, params['dim_chars']])
t = tf.transpose(flat, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
_, (_, output_fw) = lstm_cell_fw(t,
dtype=tf.float32,
sequence_length=tf.reshape(nchars, [-1]))
_, (_, output_bw) = lstm_cell_bw(t,
dtype=tf.float32,
sequence_length=tf.reshape(nchars, [-1]))
output = tf.concat([output_fw, output_bw], axis=-1)
char_embeddings = tf.reshape(output, [-1, dim_words, 50])
# Word Embeddings
word_ids = vocab_words.lookup(words)
fasttext = np.load(params['fasttext'])['embeddings'] # np.array
variable = np.vstack([fasttext, [[0.] * params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32) #, trainable=False)
word_embeddings = tf.nn.embedding_lookup(variable, word_ids)
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings, jaso_embeddings],
axis=-1)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# LSTM
t = tf.transpose(embeddings, perm=[1, 0, 2]) # Need time-major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF
logits = tf.layers.dense(output, num_tags)
crf_params = tf.get_variable("crf", [num_tags, num_tags], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
# Metrics
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices, weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(mode, features, labels, params):
model_params = ModelParams(**params['model_params'])
training_params = TrainingParams.from_dict(params['training_params'])
prediction_type = params['prediction_type']
classes_file = params['classes_file']
input_images = features['images']
if mode == tf.estimator.ModeKeys.PREDICT:
margin = training_params.training_margin
input_images = tf.pad(
input_images, [[0, 0], [margin, margin], [margin, margin], [0, 0]],
mode='SYMMETRIC',
name='mirror_padding')
if model_params.pretrained_model_name == 'vgg16':
network_output = inference_vgg16(
input_images,
model_params,
model_params.n_classes,
use_batch_norm=model_params.batch_norm,
weight_decay=model_params.weight_decay,
is_training=(mode == tf.estimator.ModeKeys.TRAIN))
key_restore_model = 'vgg_16'
elif model_params.pretrained_model_name == 'resnet50':
# Modified by me: added 'selected_intermediate_layers'
network_output, selected_intermediate_layers = inference_resnet_v1_50(
input_images,
model_params,
model_params.n_classes,
use_batch_norm=model_params.batch_norm,
weight_decay=model_params.weight_decay,
is_training=(mode == tf.estimator.ModeKeys.TRAIN))
key_restore_model = 'resnet_v1_50'
#added for classification
elif model_params.pretrained_model_name == 'resnet50_classification':
network_output, selected_intermediate_layers = inference_resnet_v1_50_classification(
input_images,
model_params,
model_params.n_classes,
use_batch_norm=model_params.batch_norm,
weight_decay=model_params.weight_decay,
is_training=(mode == tf.estimator.ModeKeys.TRAIN))
key_restore_model = 'resnet_v1_50'
elif model_params.pretrained_model_name == 'unet':
network_output = inference_u_net(
input_images,
model_params,
model_params.n_classes,
use_batch_norm=model_params.batch_norm,
weight_decay=model_params.weight_decay,
is_training=(mode == tf.estimator.ModeKeys.TRAIN))
key_restore_model = None
else:
raise NotImplementedError
if mode == tf.estimator.ModeKeys.TRAIN:
if key_restore_model is not None:
# Pretrained weights as initialization
pretrained_restorer = tf.train.Saver(var_list=[
v for v in tf.global_variables() if key_restore_model in v.name
])
def init_fn(scaffold, session):
pretrained_restorer.restore(session,
model_params.pretrained_model_file)
else:
init_fn = None
else:
init_fn = None
if mode == tf.estimator.ModeKeys.PREDICT:
pass
#margin = training_params.training_margin
# Crop padding
#if margin > 0:
# network_output = network_output[:, margin:-margin, margin:-margin, :]
# Prediction
# ----------
# Added by me: second dictionary
intermediate_layers_dict = {}
if prediction_type == PredictionType.CLASSIFICATION:
#squeezed for image classification
#network_output = tf.Print(network_output, [tf.shape(tf.nn.softmax(tf.squeeze(network_output))), tf.shape(labels)])
prediction_probs = tf.nn.softmax(tf.squeeze(network_output),
name='softmax')
prediction_labels = tf.argmax(tf.squeeze(network_output),
axis=-1,
name='label_preds')
predictions = {'probs': prediction_probs, 'labels': prediction_labels}
# Added by me: second dictionary
desired_endpoints = [
'resnet_v1_50/conv1', 'resnet_v1_50/block1/unit_3/bottleneck_v1',
'resnet_v1_50/block2/unit_4/bottleneck_v1',
'resnet_v1_50/block3/unit_6/bottleneck_v1',
'resnet_v1_50/block4/unit_3/bottleneck_v1'
]
#added by me, commented due to classification
for index, selected_intermediate_layer in enumerate(
selected_intermediate_layers):
intermediate_layers_dict[
desired_endpoints[index]] = selected_intermediate_layer
elif prediction_type == PredictionType.REGRESSION:
predictions = {'output_values': network_output}
prediction_labels = network_output
elif prediction_type == PredictionType.MULTILABEL:
with tf.name_scope('prediction_ops'):
prediction_probs = tf.nn.sigmoid(network_output,
name='sigmoid') # [B,H,W,C]
prediction_labels = tf.cast(
tf.greater_equal(prediction_probs, 0.5, name='labels'),
tf.int32) # [B,H,W,C]
predictions = {
'probs': prediction_probs,
'labels': prediction_labels
}
else:
raise NotImplementedError
# Loss
# ----
if mode in [tf.estimator.ModeKeys.TRAIN, tf.estimator.ModeKeys.EVAL]:
regularized_loss = tf.losses.get_regularization_loss()
if prediction_type == PredictionType.CLASSIFICATION:
#onehot_labels = tf.one_hot(indices=labels, depth=model_params.n_classes)
#network_output = tf.Print(network_output, [network_output])
with tf.name_scope("loss"):
per_pixel_loss = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=tf.squeeze(network_output),
labels=labels,
name='per_pixel_loss')
#per_pixel_loss = tf.nn.softmax_cross_entropy_with_logits(logits=network_output,
# labels=onehot_labels, name='per_pixel_loss')
#if training_params.focal_loss_gamma > 0.0:
# # Probability per pixel of getting the correct label
# probs_correct_label = tf.reduce_max(tf.multiply(prediction_probs, onehot_labels))
# modulation = tf.pow((1. - probs_correct_label), training_params.focal_loss_gamma)
# per_pixel_loss = tf.multiply(per_pixel_loss, modulation)
if training_params.weights_labels is not None:
weight_mask = tf.reduce_sum(tf.constant(
np.array(training_params.weights_labels,
dtype=np.float32)[None, None, None]) *
onehot_labels,
axis=-1)
per_pixel_loss = per_pixel_loss * weight_mask
if training_params.local_entropy_ratio > 0:
assert 'weight_maps' in features
r = training_params.local_entropy_ratio
per_pixel_loss = per_pixel_loss * (
(1 - r) + r * features['weight_maps'])
elif prediction_type == PredictionType.REGRESSION:
per_pixel_loss = tf.squared_difference(labels,
network_output,
name='per_pixel_loss')
elif prediction_type == PredictionType.MULTILABEL:
with tf.name_scope('sigmoid_xentropy_loss'):
labels_floats = tf.cast(labels, tf.float32)
per_pixel_loss = tf.nn.sigmoid_cross_entropy_with_logits(
labels=labels_floats,
logits=network_output,
name='per_pixel_loss')
if training_params.weights_labels is not None:
weight_mask = tf.maximum(
tf.reduce_max(tf.constant(
np.array(training_params.weights_labels,
dtype=np.float32)[None, None, None]) *
labels_floats,
axis=-1), 1.0)
per_pixel_loss = per_pixel_loss * weight_mask[:, :, :,
None]
else:
raise NotImplementedError
margin = training_params.training_margin
input_shapes = features['shapes']
with tf.name_scope('Loss'):
def _fn(_in):
output, shape = _in
return tf.reduce_mean(output[margin:shape[0] - margin,
margin:shape[1] - margin])
#per_img_loss = tf.map_fn(_fn, (per_pixel_loss, input_shapes), dtype=tf.float32)
per_img_loss = per_pixel_loss
loss = tf.reduce_mean(per_img_loss, name='loss')
loss += regularized_loss
else:
loss, regularized_loss = None, None
# Train
# -----
if mode == tf.estimator.ModeKeys.TRAIN:
# >> Stucks the training... Why ?
# ema = tf.train.ExponentialMovingAverage(0.9)
# tf.add_to_collection(tf.GraphKeys.UPDATE_OPS, ema.apply([loss]))
# ema_loss = ema.average(loss)
if training_params.exponential_learning:
global_step = tf.train.get_or_create_global_step()
learning_rate = tf.train.exponential_decay(
training_params.learning_rate,
global_step,
decay_steps=200,
decay_rate=0.95,
staircase=False)
else:
learning_rate = training_params.learning_rate
tf.summary.scalar('learning_rate', learning_rate)
optimizer = tf.train.AdamOptimizer(learning_rate)
with tf.control_dependencies(tf.get_collection(
tf.GraphKeys.UPDATE_OPS)):
train_op = optimizer.minimize(
loss, global_step=tf.train.get_or_create_global_step())
else:
ema_loss, train_op = None, None
# Summaries
# ---------
if mode == tf.estimator.ModeKeys.TRAIN:
with tf.name_scope('summaries'):
tf.summary.scalar('losses/loss', loss)
tf.summary.scalar('losses/loss_per_batch', loss)
tf.summary.scalar('losses/regularized_loss', regularized_loss)
if prediction_type == PredictionType.CLASSIFICATION:
pass
#tf.summary.image('output/prediction',
# tf.image.resize_images(class_to_label_image(prediction_labels, classes_file),
# tf.cast(tf.shape(network_output)[1:3] / 3, tf.int32)),
# max_outputs=1)
#if model_params.n_classes == 3:
# tf.summary.image('output/probs',
# tf.image.resize_images(prediction_probs[:, :, :, :],
# tf.cast(tf.shape(network_output)[1:3] / 3, tf.int32)),
# max_outputs=1)
#if model_params.n_classes == 2:
# tf.summary.image('output/probs',
# tf.image.resize_images(prediction_probs[:, :, :, 1:2],
# tf.cast(tf.shape(network_output)[1:3] / 3, tf.int32)),
# max_outputs=1)
elif prediction_type == PredictionType.REGRESSION:
summary_img = tf.nn.relu(
network_output)[:, :, :,
0:1] # Put negative values to zero
tf.summary.image('output/prediction',
summary_img,
max_outputs=1)
elif prediction_type == PredictionType.MULTILABEL:
labels_visualization = tf.cast(prediction_labels, tf.int32)
labels_visualization = multiclass_to_label_image(
labels_visualization, classes_file)
tf.summary.image('output/prediction_image',
tf.image.resize_images(
labels_visualization,
tf.cast(
tf.shape(labels_visualization)[1:3] /
3, tf.int32)),
max_outputs=1)
class_dim = prediction_probs.get_shape().as_list()[-1]
for c in range(0, class_dim):
tf.summary.image('output/prediction_probs_{}'.format(c),
tf.image.resize_images(
prediction_probs[:, :, :, c:c + 1],
tf.cast(
tf.shape(network_output)[1:3] / 3,
tf.int32)),
max_outputs=1)
# beta = tf.get_default_graph().get_tensor_by_name('upsampling/deconv_5/conv5/batch_norm/beta/read:0')
# tf.summary.histogram('Beta', beta)
# Evaluation
# ----------
if mode == tf.estimator.ModeKeys.EVAL:
if prediction_type == PredictionType.CLASSIFICATION:
metrics = {
'eval/accuracy':
tf.metrics.accuracy(labels, predictions=prediction_labels)
}
nr_classes = params['model_params']['n_classes']
for class_id in range(nr_classes):
condition = tf.logical_or(
tf.equal(class_id, tf.squeeze(labels)),
tf.equal(class_id,
tf.cast(tf.squeeze(prediction_labels), tf.int32)))
weights = tf.cond(condition, lambda: 1, lambda: 0)
precision_key = 'eval/precision_class_{}'.format(class_id)
recall_key = 'eval/recall_class_{}'.format(class_id)
pred = tf.reshape(tf.expand_dims(prediction_labels, axis=0),
[1])
lab = tf.reshape(tf.expand_dims(labels, axis=0), [1])
weights = tf.reshape(tf.expand_dims(weights, axis=0), [1])
precision = tf_metrics.precision(labels=lab,
predictions=pred,
num_classes=nr_classes,
pos_indices=[class_id],
weights=weights,
average='micro')
recall = tf_metrics.recall(labels=lab,
predictions=pred,
num_classes=nr_classes,
pos_indices=[class_id],
weights=weights,
average='micro')
metrics[precision_key] = precision
metrics[recall_key] = recall
precision_key = 'eval/macro_mean_precision_per_class'
recall_key = 'eval/macro_mean_recall_per_class'
mean_precision = tf_metrics.precision(labels=lab,
predictions=pred,
num_classes=nr_classes,
average='macro')
mean_recall = tf_metrics.recall(labels=lab,
predictions=pred,
num_classes=nr_classes,
average='macro')
metrics[precision_key] = mean_precision
metrics[recall_key] = mean_recall
precision_key = 'eval/weighted_mean_precision_per_class'
recall_key = 'eval/weighted_mean_recall_per_class'
mean_precision = tf_metrics.precision(labels=lab,
predictions=pred,
num_classes=nr_classes,
average='weighted')
mean_recall = tf_metrics.recall(labels=lab,
predictions=pred,
num_classes=nr_classes,
average='weighted')
metrics[precision_key] = mean_precision
metrics[recall_key] = mean_recall
elif prediction_type == PredictionType.REGRESSION:
metrics = {
'eval/accuracy':
tf.metrics.mean_squared_error(labels,
predictions=prediction_labels)
}
elif prediction_type == PredictionType.MULTILABEL:
metrics = {
'eval/MSE':
tf.metrics.mean_squared_error(tf.cast(labels, tf.float32),
predictions=prediction_probs),
'eval/accuracy':
tf.metrics.accuracy(tf.cast(labels, tf.bool),
predictions=tf.cast(
prediction_labels, tf.bool))
}
else:
metrics = None
# Export
# ------
if mode == tf.estimator.ModeKeys.PREDICT:
export_outputs = dict()
if 'original_shape' in features.keys():
with tf.name_scope('ResizeOutput'):
# resized_predictions = dict()
# Resize all the elements in predictions
# for k, v in predictions.items():
# Labels is rank-3 so we need to be careful in using tf.image.resize_images
# assert isinstance(v, tf.Tensor)
# v2 = v if len(v.get_shape()) == 4 else v[:, :, :, None]
# v2 = tf.image.resize_images(v2, features['original_shape'],
# method=tf.image.ResizeMethod.BILINEAR if v.dtype == tf.float32
# else tf.image.ResizeMethod.NEAREST_NEIGHBOR)
# v2 = v2 if len(v.get_shape()) == 4 else v2[:, :, :, 0]
# resized_predictions[k] = v2
# export_outputs['resized_output'] = tf.estimator.export.PredictOutput(resized_predictions)
#added by me: second dictionary
intermediate_predictions = dict()
for k, v in intermediate_layers_dict.items():
assert isinstance(v, tf.Tensor)
intermediate_predictions[k] = v
export_outputs[
'intermediate_layers'] = tf.estimator.export.PredictOutput(
intermediate_predictions)
predictions['original_shape'] = features['original_shape']
#added by me: second dictionary
predictions.update(intermediate_layers_dict)
export_outputs['output'] = tf.estimator.export.PredictOutput(
predictions)
export_outputs[
tf.saved_model.signature_constants.
DEFAULT_SERVING_SIGNATURE_DEF_KEY] = export_outputs['output']
else:
export_outputs = None
return tf.estimator.EstimatorSpec(
mode,
predictions=predictions,
loss=loss,
train_op=train_op,
eval_metric_ops=metrics,
export_outputs=export_outputs,
scaffold=tf.train.Scaffold(init_fn=init_fn))
def model_fn(features, labels, mode, params):
# For serving, features are a bit different
#if isinstance(features, dict):
# features = features['words'], features['nwords']
# Read vocabs and inputs
#import ipdb
#ipdb.set_trace()
dropout = args.dropout
#input_ids = features["input_ids"]
#mask = features["mask"]
#segment_ids = features["segment_ids"]
#label_ids = features["label_ids"]
##words, nwords = features
#tf.print(' '.join(words[4]), output_stream=sys.stderr)
training = (mode == tf.estimator.ModeKeys.TRAIN)
#vocab_words = tf.contrib.lookup.index_table_from_file(
# #args.vocab_words)
# args.vocab_words, num_oov_buckets=args.num_oov_buckets)
#with Path(args.vocab_tags).open() as f:
# indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
# num_tags = len(indices) + 1
##word_ids = vocab_words.lookup(words)
if args.embedding == 'word2id':
# word2id
with Path(args.vocab_words).open(encoding='utf-8') as f:
vocab_words_1 = f.readlines()
vocab_length = len(vocab_words_1)
input_ids = features["input_ids"]
label_ids = features["label_ids"]
mask = features["mask"]
embeddings = embedding(input_ids, vocab_length, args)
embeddings = tf.layers.dropout(embeddings,
rate=dropout,
training=training)
pass
elif args.embedding == 'bert':
from my_model.embeddings.embedding import get_bert_embedding
input_ids = features["input_ids"]
mask = features["mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
embeddings = get_bert_embedding(args.bert_config_file,
training,
input_ids,
mask,
segment_ids,
use_one_hot_embeddings=False)
else:
# Word Embeddings
# deafult
input_ids = features["input_ids"]
label_ids = features["label_ids"]
mask = features["mask"]
glove = np.load(args.glove)['embeddings'] # np.array
variable = np.vstack([glove, [[0.] * args.dim]])
variable = tf.Variable(variable,
dtype=tf.float32,
trainable=False)
embeddings = tf.nn.embedding_lookup(variable, input_ids)
embeddings = tf.layers.dropout(embeddings,
rate=dropout,
training=training)
pass
(total_loss, logits,
predicts) = create_model(embeddings,
label_ids,
mask,
training,
self.num_labels,
use_one_hot_embeddings=False)
tvars = tf.trainable_variables()
initialized_variable_names = None
scaffold_fn = None
if args.init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(
tvars, args.init_checkpoint)
tf.train.init_from_checkpoint(args.init_checkpoint,
assignment_map)
self.logging.debug("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
self.logging.debug(" name = %s, shape = %s%s", var.name,
var.shape, init_string)
if mode == tf.estimator.ModeKeys.TRAIN:
warmup_steps = args.warmup_steps
step = tf.to_float(tf.train.get_global_step())
if args.learning_rate_decay == 'sqrt':
lr_warmup = args.learning_rate_peak * tf.minimum(
1.0, step / warmup_steps)
lr_decay = args.learning_rate_peak * tf.minimum(
1.0, tf.sqrt(warmup_steps / step))
lr = tf.where(step < warmup_steps, lr_warmup, lr_decay)
elif args.learning_rate_decay == 'exp':
lr = tf.train.exponential_decay(
args.learning_rate_peak,
global_step=step,
decay_steps=args.decay_steps,
decay_rate=args.decay_rate)
elif args.learning_rate_decay == 'bert':
num_train_steps = int(self.len_train_examples /
args.batch_size * args.epochs)
#num_warmup_steps = int(num_train_steps * args.warmup_steps)
num_warmup_steps = int(num_train_steps * 0.1)
train_op = optimization.create_optimizer(
total_loss,
args.learning_rate,
num_train_steps,
num_warmup_steps,
use_tpu=False)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
#scaffold_fn=scaffold_fn
)
return output_spec
else:
self.logging.info(
'learning rate decay strategy not supported')
sys.exit()
tf.print(lr)
train_op = tf.train.AdamOptimizer(lr).minimize(
total_loss,
global_step=tf.train.get_or_create_global_step())
#return tf.estimator.EstimatorSpec(
# mode, loss=loss, train_op=train_op)
#output_spec = tf.contrib.tpu.TPUEstimatorSpec(
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
#scaffold_fn=scaffold_fn
)
elif mode == tf.estimator.ModeKeys.EVAL:
#def metric_fn(label_ids, logits,num_labels,mask):
# predictions = tf.math.argmax(logits, axis=-1, output_type=tf.int32)
# cm = metrics.streaming_confusion_matrix(label_ids, predictions, num_labels-1, weights=mask)
# return {
# "confusion_matrix":cm
# }
# #
#eval_metrics = (metric_fn, [label_ids, logits, self.num_labels, mask])
#output_spec = tf.contrib.tpu.TPUEstimatorSpec(
# Metrics
#weights = tf.sequence_mask(nwords)
weights = mask
#mask2len = tf.reduce_sum(mask,axis=1)
#weights = tf.sequence_mask(mask2len)
#pred_ids= tf.math.argmax(logits, axis=-1, output_type=tf.int32)
pred_ids = predicts
num_label_ids = self.num_labels
metrics = {
'acc':
tf.metrics.accuracy(label_ids, pred_ids, weights),
#'precision': tf.metrics.precision(label_ids, pred_ids, weights),
#'recall': tf.metrics.recall(label_ids, pred_ids, weights),
##'f1': f1(label_ids, pred_ids, weights),
'precision':
precision(label_ids, pred_ids, self.num_labels,
self.indices, weights),
'recall':
recall(label_ids, pred_ids, self.num_labels, self.indices,
weights),
'f1':
f1(label_ids, pred_ids, self.num_labels, self.indices,
weights),
}
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
eval_metric_ops=metrics
#scaffold_fn=scaffold_fn
)
else:
#output_spec = tf.contrib.tpu.TPUEstimatorSpec(
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
predictions=predicts,
#scaffold_fn=scaffold_fn
)
return output_spec
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
# Read vocabs and inputs
dropout = params['dropout']
(words, nwords), (chars, nchars) = features
training = (mode == tf.estimator.ModeKeys.TRAIN)
# num_oov_buckets是未出现在词汇表中的词下标[vocab_size, vocab_size+num_oov_buckets-1]
# 如果num_oov_buckets<=0则未包含词返回参数default_value(默认-1)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['chars'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(
indices) + 1 # indices是正类标签索引，O被作为负类不包含在indices中，在evaluate帮助度量计算
with Path(params['chars']).open() as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
# Char Embeddings，学习字符嵌入向量
char_ids = vocab_chars.lookup(chars)
# 论文要求的char_embeddings初始化方法[-sqrt(3/dim),sqrt(3/dim)]，使用后
# f1 = 0.91270673，相比使用前f1 = 0.91264033提高了，但属于随机性的正常浮动
variable = tf.get_variable('chars_embeddings',
[num_chars, params['dim_chars']],
dtype=tf.float32)
# initializer=tf.random_uniform_initializer(-tf.sqrt(3/params['dim_chars']), tf.sqrt(3/params['dim_chars'])))
char_embeddings = tf.nn.embedding_lookup(variable, char_ids)
char_embeddings = tf.layers.dropout(char_embeddings,
rate=dropout,
training=training)
# Char 1d convolution, sequence_mask将int型单词字符个数转化为bool掩码
mask = tf.sequence_mask(nchars)
char_embeddings = masked_conv1d_and_max(char_embeddings, mask,
params['filters'],
params['kernel_size'])
# Word Embeddings，使用不训练词向量而是直接使用glove.840B.300d
word_ids = vocab_words.lookup(words)
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.] * params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
word_embeddings = tf.nn.embedding_lookup(variable, word_ids)
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings], axis=-1)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# Bi-LSTM
t = tf.transpose(embeddings, perm=[1, 0, 2]) # Need time-major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF，线性链条件随机场输出变量的最大团为相邻2节点，故特征函数最多只与相邻2个输出变量有关
# logits代表crf中的一元状态特征，crf_params代表crf中的二元转移特征
logits = tf.layers.dense(
output,
num_tags) # 通过一个维度(output.shape[-1], num_tags)矩阵使得前面维度不变，最后一维变num_tags
crf_params = tf.get_variable("crf", [num_tags, num_tags], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
# Metrics
mask = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, mask),
'precision': precision(tags, pred_ids, num_tags, indices, mask),
'recall': recall(tags, pred_ids, num_tags, indices, mask),
'f1': f1(tags, pred_ids, num_tags, indices, mask),
}
# tf.metrics.acuracy会返回accuracy和update_op，前者直接计算当前未更新即上衣batch的accuracy，而
# 后者会根据当前batch结果更新total和count(正确数)并返回更新后的accuracy，所以必须执行update_op，如果把op[0]
# 即accuracy加入到summary中则total和count没有更新，accuracy始终不变
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer(learning_rate=1e-3).minimize(
loss,
global_step=tf.train.get_or_create_global_step()) # 默认学习率1e-3
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def __model_fn(self, features, labels, mode, params):
'模型结构: Bi_LSTM + CRF'
'features: 特征列; labels: tag列; '
'mode: tf.estimator.Estimator()自带的参数,用于判定TRAIN EVAL PREDICT三种类型'
'params: 参数词典'
# 判断features是那种类型:类型1:((([None],()),([None,None],[None])),[None]),这是self.__input_fn()输出的类型
# 类型2: {'words':[word1,word2,..],'nwords':number,'chars':[['J','o',..],['l',..],..],'nchars':number},
# 这是我们在预测时输入的类型
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
with tf.name_scope('Read_data'):
# 获取特征列各项
(words, nwords), (chars,
nchars) = features # words是单词列表,nwords是其相应的数量
# 获取汉语单字或英文字母的词包,eg: {char1:int64}
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['char_vocabulary'],
num_oov_buckets=params['num_oov_buckets'])
# 获取汉语词语或英文单词的词包,eg:{char2:int64}
vocab_words = tf.contrib.lookup.index_table_from_file(
params['word_vocabulary'],
num_oov_buckets=params['num_oov_buckets'])
# 获取标记对应的索引，不包括用于填充batch的padding_tag
with Path(params['tags']).open('r', encoding='utf-8') as fi:
# indices用于存储正类tag的索引,即不包含padding_tag
indices = [
idx for idx, tag in enumerate(fi)
if tag.strip() != params.get('padding_tag', 'pad')
]
num_tags = len(indices) + 1 # 总体的tag数量还要加上padding_tag,用于构建转移矩阵
# 获取汉语单字或英文字母的数量
with Path(params['char_vocabulary']).open('r',
encoding='utf-8') as fi:
# # char的数量还得加上,不在词包中的字符我们给它们的索引数量
num_chars = sum(1 for _ in fi) + params['num_oov_buckets']
# 判断模式:训练，评估，预测
training = (mode == tf.estimator.ModeKeys.TRAIN)
with tf.name_scope('Char_Embeddings_Layer'):
char_ids = vocab_chars.lookup(chars) # 获取字母列表的id列表
# char2vec = tf.get_variable('char_embeddings',[num_chars,params['char2vec_dim']],tf.float32)
# char_embeddings = tf.nn.embedding_lookup(char2vec,char_ids)
# 是否加载外部的汉字单字或英文字母的向量
if params['if_load_char2vec']:
char2vec = np.load(
params['char2vec'])['embeddings'] # 加载词向量,可通过char_id查找获取
# 为padding_tag添加词向量,用全0向量表示,注意shape要保持一致
char2vec = np.vstack(
[char2vec, [[0.] * params['char2vec_dim']]])
char2vec = tf.Variable(char2vec,
dtype=tf.float32,
trainable=False) # 词向量表转为tf.tensor，不可训练
# 获取字母列表中每个字母的词向量,由于是batch，故shape= (batch_size,time_len,input_size)
# 这里batch是每条输入中的单词个数
char_embeddings = tf.nn.embedding_lookup(char2vec, char_ids)
else:
# 通过模型训练词向量
with Path(params['char_vocabulary']).open(
'r', encoding='utf-8') as fi:
char_vocab = [
word for idx, word in enumerate(fi)
if word.strip() != ''
]
char2vec = tf.get_variable(
'char2vec', [len(char_vocab), params['char2vec_dim']])
# 为padding_tag添加词向量,用全0向量表示,注意shape要保持一致
padding_vec = tf.Variable([[0.] * params['char2vec_dim']],
dtype=tf.float32)
char2vec = tf.concat([char2vec, padding_vec], axis=0)
char2vec = tf.Variable(char2vec,
dtype=tf.float32,
trainable=True) # 词向量表转为tf.tensor，可训练
# 这里需要注意，padding_tag的向量应该是全0，但是在训练词向量过程中，padding_tag难以保持为全0
# 因此需要特别处理一下，每次都需要将char2vec最后一个向量变为全0，我们用mask
# 再构建一张lookup_table，形状与char2vec一致，其中除了最后一行元素全为0外，其余都是1
mask = [params['char2vec_dim']
] * len(char_vocab) + [0] * params['char2vec_dim']
mask_lookup_table = tf.sequence_mask(mask, dtype=tf.float32)
mask_vec = tf.nn.embedding_lookup(mask_lookup_table, char_ids)
# 获取单词中每个字母的词向量,由于是batch，故shape= (batch_size,time_len,input_size)
# 这里batch是每条输入中的单词个数
embeddings = tf.nn.embedding_lookup(char2vec, char_ids)
# 将char_ids中的padding_tag的向量重置为0
char_embeddings = tf.multiply(embeddings, mask_vec)
with tf.name_scope('Char_Embedding_Dropout_Layer'):
# char_embeddings.shape = (None,None,None,params['char2vec_dim']
# 第一个None是batch_size,第二个是每条输入中的单词个数
# 第三个None是每条输入中每个单词包含的字母个数的列表
char_embeddings = tf.layers.dropout(char_embeddings,
rate=params['dropout'],
training=training)
with tf.name_scope('Char_LSTM_Layer'):
dim_words = tf.shape(char_embeddings)[1] # 当前输入中的单词个数
dim_chars = tf.shape(char_embeddings)[2] # 当前输入中的每个单词的字母个数
flat = tf.reshape(char_embeddings,
[-1, dim_chars, params['char2vec_dim']])
t = tf.transpose(flat, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(
params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_fw)
# 获取正向LSTM最后一时刻的输出
_, (_, output_fw) = lstm_cell_fw(t,
dtype=tf.float32,
sequence_length=tf.reshape(
nchars, [-1]))
# 获取反向LSTM最后一时刻的输出
_, (_, output_bw) = lstm_cell_bw(t,
dtype=tf.float32,
sequence_length=tf.reshape(
nchars, [-1]))
# 将这两个时刻的输出按最后一维度拼接
output = tf.concat([output_fw, output_bw], axis=-1)
char_embeddings = tf.reshape(
output, [-1, dim_words, params['char_lstm_size'] * 2])
with tf.name_scope('Word_Embeddings_Layer'):
word_ids = vocab_words.lookup(words) # 获取单词列表的id列表
# 是否加载外部的词向量
if params['if_load_word2vec']:
word2vec = np.load(
params['word2vec'])['embeddings'] # 加载词向量,可通过word_id查找获取
# 为padding_tag添加词向量,用全0向量表示,注意shape要保持一致
word2vec = np.vstack(
[word2vec, [[0.] * params['word2vec_dim']]])
word2vec = tf.Variable(word2vec,
dtype=tf.float32,
trainable=False) # 词向量表转为tf.tensor，不可训练
# 获取单词列表中每个单词的词向量,由于是batch，故shape= (batch_size,time_len,input_size)
word_embeddings = tf.nn.embedding_lookup(word2vec, word_ids)
else:
# 通过模型训练词向量
with Path(params['word_vocabulary']).open(
'r', encoding='utf-8') as fi:
vocab = [
word for idx, word in enumerate(fi)
if word.strip() != ''
]
word2vec = tf.get_variable(
'word2vec', [len(vocab), params['word2vec_dim']])
# 为padding_tag添加词向量,用全0向量表示,注意shape要保持一致
padding_vec = tf.Variable([[0.] * params['word2vec_dim']],
dtype=tf.float32)
word2vec = tf.concat([word2vec, padding_vec], axis=0)
word2vec = tf.Variable(word2vec,
dtype=tf.float32,
trainable=True) # 词向量表转为tf.tensor，可训练
# 这里需要注意，padding_tag的向量应该是全0，但是在训练词向量过程中，padding_tag难以保持为全0
# 因此需要特别处理一下，每次都需要将word2vec最后一个向量变为全0，我们用mask
# 再构建一张lookup_table，形状与word2vec一致，其中除了最后一行元素全为0外，其余都是1
mask = [params['word2vec_dim']
] * len(vocab) + [0] * params['word2vec_dim']
mask_lookup_table = tf.sequence_mask(mask, dtype=tf.float32)
mask_vec = tf.nn.embedding_lookup(mask_lookup_table, word_ids)
# 获取单词列表中每个单词的词向量,由于是batch，故shape= (batch_size,time_len,input_size)
embeddings = tf.nn.embedding_lookup(word2vec, word_ids)
# 将word_ids中的padding_tag的向量重置为0
word_embeddings = tf.multiply(embeddings, mask_vec)
with tf.name_scope('Concatenate_CharEmbedding_WordEmbedding'):
embeddings = tf.concat([word_embeddings, char_embeddings], axis=-1)
with tf.name_scope('Dropout_Layer'):
embeddings = tf.layers.dropout(embeddings,
rate=params['dropout'],
training=training)
with tf.name_scope('Word_Bi_LSTM'):
# 将输入形状转为shape=(time_len,batch_size,input_size),方便LSTM计算
inputs = tf.transpose(embeddings, perm=[1, 0, 2])
# 正向LSTM
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(
params['word_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(
params['word_lstm_size'])
# 反向LSTM
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
# 正向每时刻隐藏层状态
output_fw, _ = lstm_cell_fw(inputs,
dtype=tf.float32,
sequence_length=nwords)
# 反向每时刻隐藏层状态
output_bw, _ = lstm_cell_bw(inputs,
dtype=tf.float32,
sequence_length=nwords)
# 将两个方向的状态，按时刻前后拼接在一起,沿最后一轴拼接
output = tf.concat([output_fw, output_bw], axis=-1)
# 将output形状再变回来shape = (batch_size,time_len,input_size)
output = tf.transpose(output, perm=[1, 0, 2])
with tf.name_scope('LSTM_dropout'):
output = tf.layers.dropout(output,
rate=params['dropout'],
training=training)
with tf.name_scope('Fully_connected_layer'):
# 全连接层计算每一时刻的得分值
logits = tf.layers.dense(output, num_tags)
with tf.name_scope('CRF'):
# CRF转移矩阵
crf_params = tf.get_variable('crf', [num_tags, num_tags],
dtype=tf.float32)
# crf解码,pred_ids是预测的标记列表
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
# 判断是训练,评估,还是预测
if mode == tf.estimator.ModeKeys.PREDICT:
# 预测
# 获取标记tag与其索引的字典,格式为{id:tag,..}
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
# 将tag的id映射到tag上，获取预测的标记tag
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
# 此字典存储，需要预测的内容
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
# 获取标记与其索引映射表,{tag:id},注意包含了填充标记pad
vocab_tags = tf.contrib.lookup.index_table_from_file(
params['tags'])
# 将真实tag转为id序列
tags = vocab_tags.lookup(labels)
# 计算损失函数，负的对数似然
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
# 评估指标
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices,
weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
# 评估
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
# 训练
elif mode == tf.estimator.ModeKeys.TRAIN:
# 优化器
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
# Read vocabs and inputs
dropout = params['dropout']
(words, nwords), (chars, nchars) = features
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['chars'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
with Path(params['chars']).open() as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
# Char Embeddings
char_ids = vocab_chars.lookup(chars)
variable = tf.get_variable('chars_embeddings',
[num_chars + 1, params['dim_chars']],
tf.float32)
char_embeddings = tf.nn.embedding_lookup(variable, char_ids)
# char_embeddings = tf.layers.dropout(char_embeddings, rate=dropout,
# training=training)
# Char 1d convolution
weights = tf.sequence_mask(nchars)
char_embeddings = masked_conv1d_and_max(char_embeddings, weights,
params['char_filters'],
params['char_kernel_size'])
# Word Embeddings
word_ids = vocab_words.lookup(words)
glove = np.load(params['w2v'])['embeddings'] # np.array
print("glove shape", glove.shape)
variable = np.vstack([glove,
[[0.] * params['dim']]]) # [vob_size, emb_size]
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
word_embeddings = tf.nn.embedding_lookup(variable, word_ids)
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings], axis=-1)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# sess = tf.InteractiveSession()
# emb_shape = sess.run(tf.shape(embeddings))
# print("-"*50,'emb_shape:',emb_shape)
# block_unflat_scores shape: [batch_size, max_seq_len, class_num]
block_unflat_scores, _, l2_loss = feature_layers(embeddings, reuse=False)
pred_ids = tf.argmax(block_unflat_scores[-1], 2)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
# input_mask = tf.ones(shape=[words.get_shape().as_list()[0], params["max_seq_len"]], dtype=tf.int32)
# input_mask = tf.ones_like(words,dtype=tf.int32)
# for i, real_seq_len in enumerate(nwords):
# input_mask[i, real_seq_len:] = 0
# input_mask = np.zeros((params["batch_size"], params["max_seq_len"])).astype("int")
# for i, real_seq_len in enumerate(nwords.eval()):
# input_mask[i, real_seq_len:] = 0
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
# CalculateMean cross-entropy loss
with tf.name_scope("loss"):
loss = tf.constant(0.0)
# labels = tf.cast(labels, 'int32')
# block_unflat_scores = tf.Print(block_unflat_scores,[block_unflat_scores[-1].shape])
# print(block_unflat_scores[-1].shape)
# tags = tf.Print(tags,[tags.shape])
losses = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=block_unflat_scores[-1], labels=tags)
# masked_losses = tf.multiply(losses, input_mask)
# loss += tf.div(tf.reduce_sum(masked_losses), tf.reduce_sum(input_mask))
loss += tf.reduce_sum(losses)
loss += params["l2_penalty"] * l2_loss
# Metrics
weights = tf.sequence_mask(nwords)
# tags_min = tf.reduce_min(tags)
# tags_min=tf.Print(tags_min,[tags_min], message="debug mertics tags_min")
# tags = tf.Print(tags,[tags,tags_min], message="debug mertics tags")
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices, weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(self, features, labels, mode, params):
# For serving, features are a bit different
if isinstance(features, dict):
features = features['words'], features['nwords']
# Read vocabs and inputs
dropout = params['dropout']
words, nwords = features
#nwords = tf.shape(words)[0]
#print('###########tf.shape nwords:{}#######'.format(nwords))
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
if mode == tf.estimator.ModeKeys.PREDICT:
# Word Embeddings
word_ids = vocab_words.lookup(words)
if self.embeding == 'glove':
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.]*params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=True)
embeddings = tf.nn.embedding_lookup(variable, word_ids)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# add by panyc
# with Path(params['words']).open() as f:
# vocab_words = f.readlines()
# vocab_length = len(vocab_words)
# end
else:
embeddings = tf.Variable(
# tf.random_uniform([vocab_length + 1, 300], -1.0, 1.0))
tf.random_normal([params['embeding_size'], 300], 0.0, 0.057735026918962574)
)
embeddings = tf.nn.embedding_lookup(embeddings, word_ids)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# LSTM
# t = tf.transpose(embed, perm=[1, 0, 2])
t = tf.transpose(embeddings, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF
logits = tf.layers.dense(output, params['num_tags'])
crf_params = tf.get_variable("crf", [params['num_tags'], params['num_tags']], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {
'pred_ids': pred_ids,
'tags': pred_strings
}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
print('##########nwords:{}###########'.format(nwords))
#words_shards = tf.split(words, self.num_gpus)
#labels_shards = tf.split(labels, self.num_gpus)
words = tf.cond(tf.less(tf.shape(words)[0], self.num_gpus), \
lambda:tf.concat([words]*self.num_gpus,0),lambda:words)
nwords = tf.cond(tf.less(tf.shape(nwords)[0], self.num_gpus), \
lambda:tf.concat([nwords]*self.num_gpus,0),lambda:nwords)
labels = tf.cond(tf.less(tf.shape(labels)[0], self.num_gpus), \
lambda:tf.concat([labels]*self.num_gpus,0),lambda:labels)
n = (tf.shape(words)[0]//self.num_gpus ) * self.num_gpus
words = words[:n]
nwords = nwords[:n]
labels = labels[:n]
words_shards = tf.split(words, self.num_gpus)
nwords_shards = tf.split(nwords, self.num_gpus)
labels_shards = tf.split(labels, self.num_gpus)
loss_shards = []
grad_shards = []
metric_accuracy = []
accuracy_op = None
metric_precision = []
precision_op = None
metric_recall = []
recall_op = None
metric_f1 = []
f1_op = None
#nwords = tf.div(nwords, self.num_gpus)
#nwords=10
#nwords = tf.constant([nwords,], dtype=tf.int32)
for i, device in enumerate(self.devices):
with tf.variable_scope( tf.get_variable_scope(), reuse=True if i > 0 else None):
with tf.device(device):
words = words_shards[i]
nwords = nwords_shards[i]
labels = labels_shards[i]
word_ids = vocab_words.lookup(words)
if self.embeding == 'glove':
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.]*params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=True)
embeddings = tf.nn.embedding_lookup(variable, word_ids)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# add by panyc
# with Path(params['words']).open() as f:
# vocab_words = f.readlines()
# vocab_length = len(vocab_words)
# end
else:
embeddings = tf.Variable(
# tf.random_uniform([vocab_length + 1, 300], -1.0, 1.0))
tf.random_normal([params['embeding_size'], 300], 0.0, 0.057735026918962574)
)
embeddings = tf.nn.embedding_lookup(embeddings, word_ids)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# LSTM
# t = tf.transpose(embed, perm=[1, 0, 2])
t = tf.transpose(embeddings, perm=[1, 0, 2])
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF
logits = tf.layers.dense(output, params['num_tags'])
crf_params = tf.get_variable("crf", [params['num_tags'], params['num_tags']], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
# vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'], num_oov_buckets=params['num_oov_buckets'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
loss_shards.append(loss)
weights = tf.sequence_mask(nwords,tf.shape(tags)[1])
## add by panyc
#weights = tf.expand_dims(weights,axis=0)
## end
val,accuracy_op = tf.metrics.accuracy(tags, pred_ids, weights)
metric_accuracy.append([val])
val,precision_op = precision(tags, pred_ids, params['num_tags'], self.indices, weights)
metric_precision.append([val])
val,recall_op = recall(tags, pred_ids, params['num_tags'], self.indices, weights)
metric_recall.append([val])
val,f1_op = f1(tags, pred_ids, params['num_tags'], self.indices, weights)
metric_f1.append([val])
loss = tf.reduce_mean(loss_shards)
metric_accuracy = tf.reduce_mean(metric_accuracy)
metric_precision = tf.reduce_mean(metric_precision)
metric_recall = tf.reduce_mean(metric_recall)
metric_f1 = tf.reduce_mean(metric_f1)
metrics = {
'acc': (metric_accuracy,accuracy_op),
'precision': (metric_precision,precision_op),
'recall': (metric_recall, recall_op),
'f1': (metric_f1, f1_op),
}
# Metrics
#weights = tf.sequence_mask(nwords)
for metric_name, op in metrics.items():
print('############op##########')
print(op)
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(
mode, loss=loss, eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
# train_op = tf.train.AdamOptimizer().minimize(
# loss, global_step=tf.train.get_or_create_global_step())
train_op = tf.train.AdamOptimizer(learning_rate=self.params['learnning_rate']).minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(
mode, loss=loss, train_op=train_op)
def model_fn(features, labels, mode, params):
# Read vocabs and inputs
dropout = params['dropout']
(words, nwords), (chars, nchars), add_features = features
add_features = add_features
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['chars'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
with Path(params['chars']).open() as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
# Char Embeddings
char_ids = vocab_chars.lookup(chars)
variable = tf.get_variable(
'chars', [num_chars + 1, params['dim_chars']], tf.float32)
char_embeddings = tf.nn.embedding_lookup(variable, char_ids)
char_embeddings = tf.layers.dropout(char_embeddings, rate=dropout,
training=training)
# Char LSTM
weights = tf.sequence_mask(nchars)
char_embeddings = masked_conv1d_and_max(
char_embeddings, weights, params['filters'], params['kernel_size'])
# Word Embeddings
word_ids = vocab_words.lookup(words)
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.] * params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
word_embeddings = tf.nn.embedding_lookup(variable, word_ids)
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings,tf.cast(add_features, tf.float32)], axis=-1)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# LSTM
t = tf.transpose(embeddings, perm=[1, 0, 2]) # Need time-major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
#Attention
#attention_output, alphas = attention(output, ATTENTION_SIZE, return_alphas=True)
num_units = 200
#W1 = tf.get_variable("W1", [num_units, num_units], dtype=tf.float32)
W1 = tf.get_variable("W1", [num_units, num_units], initializer=tf.glorot_uniform_initializer(),dtype=tf.float32)
b1 = tf.get_variable("b1", [num_units, ], dtype=tf.float32)
q = tf.tensordot(output, W1, axes=[[2], [0]])
out_shape = tf.shape(output)
#b1_shuffled = self.b1.dimshuffle('x', 'x', 0)
b1_shuffled = tf.expand_dims(b1, 0)
b1_shuffled = tf.expand_dims(b1_shuffled, 0)
#print("b shape",tf.shape(b1_shuffled))
q += b1_shuffled
q = tf.tanh(q)
q_trans = tf.transpose(q, perm=[0, 2, 1])
#out = tf.batched_dot(q, q.dimshuffle(0, 2, 1))
out = tf.matmul(q, q_trans)
#print("out dimension",out.shape)
out *= (1 - tf.eye(out_shape[1], out_shape[1]))
matrix = tf.nn.softmax(tf.reshape(out,(out_shape[0] * out_shape[1], out_shape[1])))
matrix = tf.reshape(matrix,(out_shape[0] , out_shape[1], out_shape[1]))
#print("new dimension",matrix.shape)
atten_out = tf.matmul(matrix,output)
#print("atten dimension",atten_out.shape)
#print("output dimension",output.shape)
output = tf.concat([output, atten_out], axis=-1)
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF
logits = tf.layers.dense(output, num_tags)
crf_params = tf.get_variable("crf", [num_tags, num_tags], dtype=tf.float32)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
predictions = {
'pred_ids': pred_ids,
'tags': pred_strings
}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
# Metrics
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices, weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(
mode, loss=loss, eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(
mode, loss=loss, train_op=train_op)
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
params['num_tags'] = num_tags
# Graph
(words, nwords), (chars, nchars) = features
logits, crf_params = graph_fn(features, labels, mode, params)
pred_ids, _ = tf.contrib.crf.crf_decode(logits, crf_params, nwords)
# Moving Average
variables = tf.get_collection('trainable_variables', 'graph')
ema = tf.train.ExponentialMovingAverage(0.999)
ema_op = ema.apply(variables)
logits_ema, crf_params_ema = graph_fn(features,
labels,
mode,
params,
reuse=True,
getter=ema_getter(ema))
pred_ids_ema, _ = tf.contrib.crf.crf_decode(logits_ema, crf_params_ema,
nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(tf.to_int64(pred_ids))
pred_strings_ema = reverse_vocab_tags.lookup(tf.to_int64(pred_ids_ema))
predictions = {
'pred_ids': pred_ids,
'tags': pred_strings,
'pred_ids_ema': pred_ids_ema,
'tags_ema': pred_strings_ema,
}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(-log_likelihood)
# Metrics
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'acc_ema': tf.metrics.accuracy(tags, pred_ids_ema, weights),
'pr': precision(tags, pred_ids, num_tags, indices, weights),
'pr_ema': precision(tags, pred_ids_ema, num_tags, indices,
weights),
'rc': recall(tags, pred_ids, num_tags, indices, weights),
'rc_ema': recall(tags, pred_ids_ema, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
'f1_ema': f1(tags, pred_ids_ema, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer().minimize(
loss,
global_step=tf.train.get_or_create_global_step(),
var_list=variables)
train_op = tf.group([train_op, ema_op])
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
# Read vocabs and inputs
dropout = params['dropout']
(words, nwords), (chars, nchars) = features
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.lookup.StaticVocabularyTable(
tf.lookup.TextFileInitializer(
params['words'],
key_dtype=tf.string,
key_index=tf.lookup.TextFileIndex.WHOLE_LINE,
value_dtype=tf.int64,
value_index=tf.lookup.TextFileIndex.LINE_NUMBER),
num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.lookup.StaticVocabularyTable(
tf.lookup.TextFileInitializer(
params['chars'],
key_dtype=tf.string,
key_index=tf.lookup.TextFileIndex.WHOLE_LINE,
value_dtype=tf.int64,
value_index=tf.lookup.TextFileIndex.LINE_NUMBER),
num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
with Path(params['chars']).open() as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
# Char Embeddings
char_ids = vocab_chars.lookup(chars)
variable = tf.compat.v1.get_variable('chars_embeddings',
[num_chars + 1, params['dim_chars']],
tf.float32)
char_embeddings = tf.nn.embedding_lookup(params=variable, ids=char_ids)
char_embeddings = tf.keras.layers.Dropout(dropout)(char_embeddings,
training=training)
# Char 1d convolution
weights = tf.sequence_mask(nchars)
char_embeddings = masked_conv1d_and_max(char_embeddings, weights,
params['filters'],
params['kernel_size'])
# Word Embeddings
word_ids = vocab_words.lookup(words)
glove = np.load(params['glove'])['embeddings'] # np.array
variable = np.vstack([glove, [[0.] * params['dim']]])
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
word_embeddings = tf.nn.embedding_lookup(params=variable, ids=word_ids)
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings], axis=-1)
embeddings = tf.keras.layers.Dropout(dropout)(embeddings,
training=training)
# LSTM
t = tf.transpose(a=embeddings, perm=[1, 0, 2]) # Need time-major
biLSTM = tf.keras.layers.Bidirectional(
tf.keras.layers.LSTM(params['lstm_size'], return_sequences=True))(t)
# lstm_cell_fw = tf.keras.layers.LSTM(params['lstm_size'])
# lstm_cell_bw = tf.keras.layers.LSTM(params['lstm_size'])
# lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
# output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
# output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
# output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(a=biLSTM, perm=[1, 0, 2])
output = tf.keras.layers.Dropout(dropout)(output, training=training)
# CRF
logits = tf.keras.layers.Dense(num_tags)(output)
crf_params = tf.compat.v1.get_variable("crf", [num_tags, num_tags],
dtype=tf.float32)
pred_ids, _ = tfa.text.crf_decode(logits, crf_params, nwords)
if mode == tf.estimator.ModeKeys.PREDICT:
# Predictions
reverse_vocab_tags = tf.lookup.StaticHashTable(
tf.lookup.TextFileInitializer(
params['tags'],
key_dtype=tf.int64,
key_index=tf.lookup.TextFileIndex.LINE_NUMBER,
value_dtype=tf.string,
value_index=tf.lookup.TextFileIndex.WHOLE_LINE), "D")
pred_strings = reverse_vocab_tags.lookup(
tf.cast(pred_ids, dtype=tf.int64))
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.lookup.StaticVocabularyTable(
tf.lookup.TextFileInitializer(
params['tags'],
key_dtype=tf.string,
key_index=tf.lookup.TextFileIndex.WHOLE_LINE,
value_dtype=tf.int64,
value_index=tf.lookup.TextFileIndex.LINE_NUMBER),
num_oov_buckets=params['num_oov_buckets'])
# vocab_tags = tf.contrib.lookup.index_table_from_file(params['tags'])
tags = vocab_tags.lookup(labels)
log_likelihood, _ = tfa.text.crf_log_likelihood(
logits, tags, nwords, crf_params)
loss = tf.reduce_mean(input_tensor=-log_likelihood)
# Metrics
weights = tf.sequence_mask(nwords)
metrics = {
'acc': tf.compat.v1.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(tags, pred_ids, num_tags, indices, weights),
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.compat.v1.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.compat.v1.train.AdamOptimizer().minimize(
loss,
global_step=tf.compat.v1.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def model_fn(features, labels, mode, params):
# For serving features are a bit different
if isinstance(features, dict):
features = ((features['words'], features['nwords']),
(features['chars'], features['nchars']))
# Read vocabs and inputs
(words, nwords), (chars, nchars) = features
dropout = params['dropout']
training = (mode == tf.estimator.ModeKeys.TRAIN)
vocab_words = tf.contrib.lookup.index_table_from_file(
params['words'], num_oov_buckets=params['num_oov_buckets'])
vocab_chars = tf.contrib.lookup.index_table_from_file(
params['chars'], num_oov_buckets=params['num_oov_buckets'])
with Path(params['tags']).open() as f:
indices = [idx for idx, tag in enumerate(f) if tag.strip() != 'O']
num_tags = len(indices) + 1
with Path(params['chars']).open() as f:
num_chars = sum(1 for _ in f) + params['num_oov_buckets']
# Char Embeddings
char_ids = vocab_chars.lookup(chars) #[[a,b][c,z]] => [[0,1][2,25]]
variable = tf.get_variable('chars_embeddings',
[num_chars, params['dim_chars']],
tf.float32) #dimension char embeddings [86,100]
char_embeddings = tf.nn.embedding_lookup(
variable, char_ids
) #char_ids [0,1] 0 va prendre le premier vecteur (variable [0,:]), donc [[0,1][2,25]] => [[variable[0,:],variable[1,:]][variable[2,:],variable[25,:]]]
char_embeddings = tf.layers.dropout(char_embeddings,
rate=dropout,
training=training) #50% de l'entrée
# Char LSTM
dim_words = tf.shape(
char_embeddings
)[1] #max dim word (time len)(or number of chars max of a word)[nombre de phrase(batch),nombre de mots max,time len, dim char 100]
dim_chars = tf.shape(
char_embeddings
)[2] #dimension de char 100 [nombre de phrase(batch),nombre de mots max,time len ,dim char 100]
flat = tf.reshape(char_embeddings, [-1, dim_chars, params['dim_chars']
]) #[?,max len word(or time len),100]
t = tf.transpose(flat,
perm=[1, 0,
2]) #[max len word(or time len),?,100] time major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['char_lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
_, (_, output_fw) = lstm_cell_fw(t,
dtype=tf.float32,
sequence_length=tf.reshape(
nchars, [-1])) #we take last state
_, (_, output_bw) = lstm_cell_bw(t,
dtype=tf.float32,
sequence_length=tf.reshape(
nchars, [-1])) #we take last state
output = tf.concat(
[output_fw, output_bw],
axis=-1) #concat on the last D dimension of tensors 25+25
char_embeddings_lstm = tf.reshape(
output, [-1, params['char_lstm_size'] * 2]) # [b,t,D]
char_embeddings_lstm = tf.expand_dims(char_embeddings_lstm, -2)
# Char 1d convolution
weights = tf.sequence_mask(nchars)
char_embeddings_cnn = masked_conv1d_and_max(char_embeddings, weights,
params['filters'],
params['kernel_size'])
char_embeddings_cnn = tf.reshape(char_embeddings_cnn,
[-1, params['filters']])
char_embeddings_cnn = tf.expand_dims(char_embeddings_cnn, -2)
#concat cnn and lstm char embeddings
char_embeddings = tf.concat([char_embeddings_cnn, char_embeddings_lstm],
axis=-2)
#attention
with tf.name_scope('Attention_layer'):
attention_output, alphas = attention(char_embeddings,
params['char_lstm_size'] * 2,
time_major=False,
return_alphas=True)
tf.summary.histogram('alphas', alphas)
char_embeddings = tf.reshape(attention_output,
[-1, dim_words, params['char_lstm_size'] * 2])
# Word Embeddings
word_ids = vocab_words.lookup(
words
) #[[b'Peter', b'Blackburn'],[b'Yac', b'Amirat']] => [[b'0', b'1'],[b'2', b'3']]
glove = np.load(params['glove'])[
'embeddings'] # np.array glove made of vocab words (reduces list)
variable = np.vstack([glove, [[0.] * params['dim']]
]) #concatenate on -1 axis, glove + [[0.]]
variable = tf.Variable(variable, dtype=tf.float32, trainable=False)
word_embeddings = tf.nn.embedding_lookup(
variable, word_ids
) #[[b'0', b'1'],[b'2', b'3']] => [[b'variable[0]', b'variable[1]'],[b'variable[2]', b'variable[3]']] [2,2,300]
# Concatenate Word and Char Embeddings
embeddings = tf.concat([word_embeddings, char_embeddings],
axis=-1) #concat on the last dimension axis 100+300
embeddings = tf.layers.dropout(embeddings, rate=dropout,
training=training) #50% de l'entrée
# LSTM for lstm
t = tf.transpose(
embeddings, perm=[1, 0, 2]
) # Need time-major #put the word dim as first dimension. check batch-major VS time-major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
#ELMO
elmo = hub.Module("https://tfhub.dev/google/elmo/2", trainable=False)
word_embeddings = elmo(inputs={
"tokens": words,
"sequence_len": nwords
},
signature="tokens",
as_dict=True)["elmo"]
# Concatenate output LSTM1 and ELMO Embeddings, dropout
embeddings = tf.concat([word_embeddings, output], axis=-1)
embeddings = tf.layers.dropout(embeddings, rate=dropout, training=training)
# LSTM 2
t = tf.transpose(embeddings, perm=[1, 0, 2]) # Need time-major
lstm_cell_fw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm2_size'])
lstm_cell_bw = tf.contrib.rnn.LSTMBlockFusedCell(params['lstm2_size'])
lstm_cell_bw = tf.contrib.rnn.TimeReversedFusedRNN(lstm_cell_bw)
output_fw, _ = lstm_cell_fw(t, dtype=tf.float32, sequence_length=nwords)
output_bw, _ = lstm_cell_bw(t, dtype=tf.float32, sequence_length=nwords)
output = tf.concat([output_fw, output_bw], axis=-1)
output = tf.transpose(output, perm=[1, 0, 2])
output = tf.layers.dropout(output, rate=dropout, training=training)
# CRF
logits = tf.layers.dense(
output, num_tags
) #nn dense input : (output of bilstm), output dimension : same shape excpet last dim will be num of tags
crf_params = tf.get_variable(
"crf", [num_tags, num_tags],
dtype=tf.float32) #variable of crf pars matrix num_tags*num_tags
pred_ids, _ = tf.contrib.crf.crf_decode(
logits, crf_params, nwords
) #decode_tags: A [batch_size, max_seq_len] matrix, with dtype tf.int32. Contains the highest scoring tag indices.
#potentials(logits): A [batch_size, max_seq_len, num_tags] tensor of unary potentials.
if mode == tf.estimator.ModeKeys.PREDICT: #prediction
# Predictions
reverse_vocab_tags = tf.contrib.lookup.index_to_string_table_from_file(
params['tags'])
pred_strings = reverse_vocab_tags.lookup(
tf.to_int64(pred_ids)
) #indices = tf.constant([1, 5], tf.int64) => ["lake", "UNKNOWN"]
predictions = {'pred_ids': pred_ids, 'tags': pred_strings}
return tf.estimator.EstimatorSpec(mode, predictions=predictions)
else:
# Loss
vocab_tags = tf.contrib.lookup.index_table_from_file(
params['tags']) #get tags index from file
tags = vocab_tags.lookup(labels) #replace lables by thier indexes
log_likelihood, _ = tf.contrib.crf.crf_log_likelihood(
logits, tags, nwords, crf_params
) #calculate log_likelihood given the real tags, return: A [batch_size] Tensor containing the log-likelihood of each example, given the sequence of tag indices.
loss = tf.reduce_mean(
-log_likelihood
) #Computes the mean of elements across dimensions of a tensor. x = tf.constant([[1., 1.], [2., 2.]]) tf.reduce_mean(x) # 1.5
# Metrics
weights = tf.sequence_mask(
nwords
) #convert the vector of size n to a matrix of bool of size n * max value in the vector v[1,2] ==> m[[true,false],[true, true]]
metrics = {
'acc': tf.metrics.accuracy(tags, pred_ids, weights),
'precision': precision(
tags, pred_ids, num_tags, indices, weights
), #ground truth, predictions, num of tags 9, The indices of the positive classes,
'recall': recall(tags, pred_ids, num_tags, indices, weights),
'f1': f1(tags, pred_ids, num_tags, indices, weights),
}
for metric_name, op in metrics.items():
tf.summary.scalar(
metric_name, op[1]
) #for tensor board#tuple of (scalar float Tensor, update_op) op[1] => update_op: An operation that increments the total and count variables appropriately and whose value matches accuracy.
if mode == tf.estimator.ModeKeys.EVAL: #Eval
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN: #training
train_op = tf.train.AdamOptimizer().minimize(
loss, global_step=tf.train.get_or_create_global_step()
) #adam optimizer operation to optimize the loss, global_step: Optional Variable to increment by one after the variables have been updated.
return tf.estimator.EstimatorSpec(mode,
loss=loss,
train_op=train_op)
def metric_fn(per_example_loss, label_ids, logits,
is_real_example):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int64)
accuracy = tf.compat.v1.metrics.accuracy(
labels=label_ids,
predictions=predictions,
weights=is_real_example)
loss = tf.compat.v1.metrics.mean(values=per_example_loss,
weights=is_real_example)
precision = tf_metrics.precision(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="micro")
recall = tf_metrics.recall(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="micro")
precision_mac = tf_metrics.precision(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="macro")
recall_mac = tf_metrics.recall(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="macro")
precision_weighted = tf_metrics.precision(
labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="weighted")
recall_weighted = tf_metrics.recall(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="weighted")
#pos_indices=[1,2,3] # class 0:che is the negative class
#recall_che = tf_metrics.recall(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#recall, op_rec = tf.compat.v1.metrics.recall(labels=label_ids, predictions=predictions, weights=is_real_example)
#precision_che = tf_metrics.precision(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#precision, op_prec = tf.compat.v1.metrics.precision(labels=label_ids, predictions=predictions, weights=is_real_example)
#pos_indices=[0,2,3] # class 1:dis is the negative class
#recall_dis = tf_metrics.recall(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#recall, op_rec = tf.compat.v1.metrics.recall(labels=label_ids, predictions=predictions, weights=is_real_example)
#precision_dis = tf_metrics.precision(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#pos_indices=[0,1,3] # class 2:ggp is the negative class
#recall_ggp = tf_metrics.recall(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#recall, op_rec = tf.compat.v1.metrics.recall(labels=label_ids, predictions=predictions, weights=is_real_example)
#precision_ggp = tf_metrics.precision(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#pos_indices=[0,1,2] # class 3:org is the negative class
#recall_org = tf_metrics.recall(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#recall, op_rec = tf.compat.v1.metrics.recall(labels=label_ids, predictions=predictions, weights=is_real_example)
#precision_org = tf_metrics.precision(labels=label_ids,predictions=predictions,num_classes=num_labels,pos_indices=pos_indices,average="micro")
#default average micro, other option:macro, weighted
#pos_indices=[1,2,3] #class 0 is the negative class
f1 = tf_metrics.f1(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="micro")
f1_mac = tf_metrics.f1(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="macro")
f1_wei = tf_metrics.f1(labels=label_ids,
predictions=predictions,
num_classes=num_labels,
average="weighted")
#these calculations are all wrong
#FN, FN_op = tf.compat.v1.metrics.false_negatives(labels=label_ids, predictions=predictions, weights=is_real_example)
#FP, FP_op = tf.compat.v1.metrics.false_positives(labels=label_ids, predictions=predictions, weights=is_real_example)
#TP, TP_op = tf.compat.v1.metrics.true_positives(labels=label_ids, predictions=predictions, weights=is_real_example)
#TN, TN_op = tf.compat.v1.metrics.true_negatives(labels=label_ids, predictions=predictions, weights=is_real_example)
#f1 = 2 * (precision * recall) / (precision + recall)
#f1_op = tf.group(op_rec, op_prec, tf.identity(f1, name="f1"))
#MCC = (TP * TN - FP * FN) / ((TP + FP) * (TP + FN) * (TN + FP) * (TN + FN)) ** 0.5
#MCC_op = tf.group(FN_op, TN_op, TP_op, FP_op, tf.identity(MCC, name="MCC"))
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
"precision": precision,
"recall": recall,
"precision_mac": precision_mac,
"recall_mac": recall_mac,
"precision_weighted": precision_weighted,
"recall_weighted": recall_weighted,
#"recall": (recall,op_rec),
#"precision": (precision, op_prec),
#"recall_che":recall_che,
#"precision_che": precision_che,
#"precision_dis":precision_dis,
#"recall_dis":recall_dis,
#"precision_ggp":precision_ggp,
#"recall_ggp":recall_ggp,
#"precision_org":precision_org,
#"recall_org":recall_org,
"f1-score": f1,
"f1-macro": f1_mac,
"f1-weighted": f1_wei,
#"false negatives": (FN,FN_op),
#"false positives": (FP,FP_op),
#"true positives": (TP,TP_op),
#"true negatives": (TN,TN_op),
#"f1":(f1,f1_op),
#"MCC": (MCC, MCC_op)
}
def model_fn(mode, features, labels):
# Logging
Path('results').mkdir(exist_ok=True)
tf.logging.set_verbosity(logging.INFO)
handlers = [
logging.FileHandler('./results/main.log'),
logging.StreamHandler(sys.stdout)
]
logging.getLogger('tensorflow').handlers = handlers
word_inputs, char_inputs = features
training = (mode == tf.estimator.ModeKeys.TRAIN)
# Embeddings
embeddings = tf.get_variable('embeddings',
[cfg.num_chars + 2, cfg.char_embed_dim])
char_input_emb = tf.nn.embedding_lookup(embeddings, char_inputs)
# Reshaping for CNN
output = tf.reshape(char_input_emb,
[-1, tf.shape(char_inputs)[2], cfg.char_embed_dim])
# CNN
output = tf.layers.conv1d(output,
filters=64,
kernel_size=2,
strides=1,
padding="same",
activation=tf.nn.relu)
output = tf.layers.max_pooling1d(output, pool_size=2, strides=2)
output = tf.layers.conv1d(output,
filters=128,
kernel_size=2,
strides=1,
padding="same",
activation=tf.nn.relu)
output = tf.layers.max_pooling1d(output, pool_size=2, strides=2)
cnn_output = tf.layers.dropout(output, rate=.5, training=training)
cnn_output = tf.layers.flatten(cnn_output)
# Reshaping CNN and concatenating for LSTM
cnn_output = tf.reshape(
cnn_output,
[-1, tf.shape(char_inputs)[1], 128 * int(cfg.word_max_len / 4)])
word_inputs = tf.layers.dropout(word_inputs, rate=.5, training=training)
lstm_inputs = tf.concat([word_inputs, cnn_output], axis=-1)
# LSTM
fw_cell = tf.contrib.rnn.LSTMCell(num_units=cfg.lstm_units)
bw_cell = tf.contrib.rnn.LSTMCell(num_units=cfg.lstm_units)
(fw_outputs, bw_outputs), (fw_state,
bw_state) = tf.nn.bidirectional_dynamic_rnn(
fw_cell,
bw_cell,
lstm_inputs,
dtype=tf.float32)
# Attention
W = tf.Variable(tf.random_normal([cfg.lstm_units], stddev=0.1))
H = fw_outputs + bw_outputs
M = tf.tanh(H)
alpha = tf.nn.softmax(
tf.reshape(
tf.matmul(tf.reshape(M, [-1, cfg.lstm_units]),
tf.reshape(W, [-1, 1])), (-1, tf.shape(word_inputs)[1])))
r = tf.matmul(tf.transpose(H, [0, 2, 1]),
tf.reshape(alpha, [-1, tf.shape(word_inputs)[1], 1]))
r = tf.squeeze(r)
h_star = tf.tanh(r)
h_drop = tf.nn.dropout(h_star, .5)
# Dense
FC_W = tf.Variable(tf.truncated_normal([cfg.lstm_units, 2], stddev=0.1))
FC_b = tf.Variable(tf.constant(0., shape=[2]))
logits = tf.nn.xw_plus_b(h_drop, FC_W, FC_b)
# Loss
loss = tf.reduce_mean(
tf.nn.softmax_cross_entropy_with_logits(labels=labels, logits=logits))
# Gradient clipping
# optimizer = tf.train.AdamOptimizer(1e-4)
# gradients, variables = zip(*optimizer.compute_gradients(loss))
# gradients, _ = tf.clip_by_global_norm(gradients, .1)
# train_op = optimizer.apply_gradients(zip(gradients, variables), tf.train.get_global_step())
# Metrics
indices = [0, 1]
labels = tf.argmax(labels, 1)
pred_ids = tf.argmax(logits, 1)
metrics = {
'acc': tf.metrics.accuracy(labels, pred_ids),
'precision': precision(labels,
pred_ids,
2,
indices,
None,
average='macro'),
'recall': recall(labels, pred_ids, 2, indices, None, average='macro'),
'f1': f1(labels, pred_ids, 2, indices, None, average='macro')
}
for metric_name, op in metrics.items():
tf.summary.scalar(metric_name, op[1])
if mode == tf.estimator.ModeKeys.EVAL:
return tf.estimator.EstimatorSpec(mode,
loss=loss,
eval_metric_ops=metrics)
elif mode == tf.estimator.ModeKeys.TRAIN:
train_op = tf.train.AdamOptimizer(cfg.learning_rate).minimize(
loss, global_step=tf.train.get_or_create_global_step())
return tf.estimator.EstimatorSpec(mode, loss=loss, train_op=train_op)
def build_metrics(self):
with tf.name_scope('Metrics'):
average = 'micro'
with tf.name_scope('Train'):
self.train_target_precision, self.train_target_precision_op = tf_metrics.precision(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.train_target_recall, self.train_target_recall_op = tf_metrics.recall(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.train_target_f1, self.train_target_f1_op = tf_metrics.f1(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.train_sentiment_precision, self.train_sentiment_precision_op = tf_metrics.precision(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
self.train_sentiment_recall, self.train_sentiment_recall_op = tf_metrics.recall(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
self.train_sentiment_f1, self.train_sentiment_f1_op = tf_metrics.f1(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
with tf.name_scope('Test'):
self.test_target_precision, self.test_target_precision_op = tf_metrics.precision(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.test_target_recall, self.test_target_recall_op = tf_metrics.recall(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.test_target_f1, self.test_target_f1_op = tf_metrics.f1(
self.y_target,
self.target_preds,
self.C_tar, [i for i in range(1, self.C_tar)],
average=average)
self.test_sentiment_precision, self.test_sentiment_precision_op = tf_metrics.precision(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
self.test_sentiment_recall, self.test_sentiment_recall_op = tf_metrics.recall(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
self.test_sentiment_f1, self.test_sentiment_f1_op = tf_metrics.f1(
self.y_sentiment,
self.sentiment_preds,
self.C_sent, [i for i in range(1, self.C_sent)],
average=average)
