def main():
# create measurement manager
thoth = Thoth()
# get list of files in example dir
chdir('example')
filenames = listdir('.')
# open all the files
thoth.open(filenames)
# get the average, take smoothed derivative
# smooth result, display it and try to fit bcs
average = thoth.get_average()
class Param:
num_points = 8
poly_degree = 4
diff_order = 1
param = Param()
didv = average.compute_savitzky(param, interactive=False)
didv_smoothed = didv.compute_wiener()
if PREVIEW:
thoth.create_window(didv_smoothed)
thoth.create_window(average)
fit = didv_smoothed.fit_bcs()
print fit.get_values()
def main():
# create measurement manager
thoth = Thoth()
# get list of files in example dir
chdir('example')
filenames = listdir('.')
# open all the files
thoth.open(filenames)
# get the average, take smoothed derivative
# smooth result, display it and try to fit bcs
average = thoth.get_average()
class Param:
num_points = 8
poly_degree = 4
diff_order = 1
param = Param()
didv = average.compute_savitzky(param, interactive=False)
didv_smoothed = didv.compute_wiener()
if PREVIEW:
thoth.create_window(didv_smoothed)
thoth.create_window(average)
fit = didv_smoothed.fit_bcs()
print fit.get_values()
def main():
# create measurement manager
thoth = Thoth()
# get list of files in example dir
chdir('example')
filenames = listdir('.')
# open all the files
thoth.open(filenames)
# get the average, take smoothed derivative
# smooth result, display it and try to fit bcs
average = thoth.get_average()
didv = average.compute_savitzky()
didv_smoothed = didv.compute_wiener()
thoth.create_window(didv_smoothed)
didv_smoothed.fit_bcs()
def main():
# create measurement manager
thoth = Thoth()
# get list of files in example dir
chdir('example')
filenames = listdir('.')
# open all the files
thoth.open(filenames)
# get the average, take smoothed derivative
# smooth result, display it and try to fit bcs
average = thoth.get_average()
didv = average.compute_savitzky()
didv_smoothed = didv.compute_wiener()
thoth.create_window(didv_smoothed)
didv_smoothed.fit_bcs()
def main():
# create measurement manager
thoth = Thoth()
items = []
for path in sys.argv[1:]:
# get list of files in example dir
try:
filenames = listdir(path)
except OSError:
print "Unable to find folder, ignore."
continue
# open all the files
chdir(path)
thoth.open(filenames)
# get the average, take smoothed derivative
# smooth result, display it and try to fit bcs
average = thoth.get_average()
smoothed = average.compute_gaussian(interactive=False)
class Param:
num_points = 4
poly_degree = 3
diff_order = 1
param = Param()
didv = smoothed.compute_savitzky(param, interactive=False)
thoth.create_window(didv)
if PREVIEW:
thoth.create_window(average)
didv_smoothed = didv.compute_wiener()
thoth.create_window(didv_smoothed)
thoth.create_window(didv.compute_gaussian(interactive=False))
thoth.create_window(smoothed.compute_derivative())
thoth.create_window(smoothed)
items.append(didv)
def __init__(self, parent=None):
QMainWindow.__init__(self, parent)
self.thoth = Thoth()
self._setup()
self.file_menu_action = []
self.console = None
class ThothMainWindow(QMainWindow):
def __init__(self, parent=None):
QMainWindow.__init__(self, parent)
self.thoth = Thoth()
self._setup()
self.file_menu_action = []
self.console = None
def closeEvent(self, event):
if self.console is not None:
self.console.exit_interpreter()
event.accept()
def _setup(self):
self.setWindowTitle(_('Thoth – Scanning Probe Analysis Tool'))
self.create_menus()
self.create_main_frame()
self.create_status_bar()
self.create_list_dock()
self.create_info_dock()
self.create_internal_console()
self.connect_thoth()
self.show()
if DEMO:
self.thoth.open('testfiles/flatfile/topo.flat')
self.thoth.open('testfiles/flatfile/iv.flat')
self.thoth.open('testfiles/flatfile/grid.flat')
def connect_thoth(self):
QObject.connect(self.thoth, SIGNAL("item_registred"),
self.thoth.create_window)
#QObject.connect(self.thoth, SIGNAL("window_registred(QWidget)"), self.mdi_area.addSubWindow)
QObject.connect(self.thoth, SIGNAL("window_registred"),
self.add_sub_window)
def add_sub_window(self, window):
self.mdi_area.addSubWindow(window)
self.list_widget.addItem(window.windowTitle())
window.show()
def create_internal_console(self):
if DockableConsole is None:
self.console = None
else:
import time, scipy.signal as sps, scipy.ndimage as spi
import sys, os
import numpy as np
ns = {'thoth': self.thoth,
'np': np, 'sps': sps, 'spi': spi,
'os': os, 'sys': sys, 'time': time}
msg = "Example: thoth.get_items()[0]\n"\
"Modules imported at startup: "\
"os, sys, os.path as osp, time, "\
"numpy as np, scipy.signal as sps, scipy.ndimage as spi"
self.console = DockableConsole(self, namespace=ns, message=msg)
console_dock = QDockWidget(_('Console'))
self.addDockWidget(Qt.BottomDockWidgetArea, console_dock)
console_dock.setWidget(self.console)
#self.connect(self.console.interpreter.widget_proxy,
#SIGNAL("new_prompt(QString)"),
#lambda txt: self.refresh_lists())
def about(self):
QMessageBox.about( self, _("About ")+APP_NAME,
"""<b>%s</b> v%s<br>%s<p>
<br>Copyright © François Bianco, University of Geneva
<br>[email protected]
<br>Distributed under the GNU GPL License v.3
""" % \
(APP_NAME, VERSION, APP_DESC))
def create_main_frame(self):
self.mdi_area = QMdiArea()
self.connect( self.mdi_area,
SIGNAL("subWindowActivated(QMdiSubWindow)"),
self.update_info)
self.setCentralWidget(self.mdi_area)
def update_info(self, window):
self.info_widget.clear()
self.info_widget.addItem(window.windowTitle())
def create_list_dock(self) :
list_dock = QDockWidget(_('Files'))
self.addDockWidget(Qt.RightDockWidgetArea, list_dock)
self.list_widget = QListWidget()
self.connect(self.list_widget,
SIGNAL( "currentItemChanged( QListWidgetItem, QListWidgetItem)" ),
self.change_selection)
list_dock.setWidget(self.list_widget)
def change_selection(self, current, previous):
pass
def create_info_dock(self):
info_dock = QDockWidget(_('Info'))
self.addDockWidget(Qt.RightDockWidgetArea, info_dock)
self.info_widget = QListWidget()
info_dock.setWidget(self.info_widget)
def create_status_bar(self):
self.statusBar().showMessage(_("Open a file"))
def create_menus(self):
file_menu = self.menuBar().addMenu(_("&File"))
open_file_action = create_action(self, _("&Open File"),
shortcut="Ctrl+O",
triggered=self.thoth.open,
tip=_("Open a measurement file"))
#save_plot_action = create_action(self,"&Save all the plots",
#shortcut="Ctrl+S", triggered=self.save_plots,
#tip="Save all the plots")
quit_action = create_action(self, _("&Quit"), triggered=self.close,
shortcut="Ctrl+Q", tip=_("Close the application"))
add_actions(file_menu, (open_file_action, None, quit_action))
help_menu = self.menuBar().addMenu("&Help")
about_action = create_action(self, _("&About"),
shortcut='F1', triggered=self.about,
tip=_('About Thoth'))
add_actions(help_menu, (about_action,))
def __init__(self, parent=None):
QMainWindow.__init__(self, parent)
self.thoth = Thoth()
self._setup()
self.file_menu_action = []
self.console = None
class ThothMainWindow(QMainWindow):
def __init__(self, parent=None):
QMainWindow.__init__(self, parent)
self.thoth = Thoth()
self._setup()
self.file_menu_action = []
self.console = None
def closeEvent(self, event):
if self.console is not None:
self.console.exit_interpreter()
event.accept()
def _setup(self):
self.setWindowTitle(_('Thoth – Scanning Probe Analysis Tool'))
self.create_menus()
self.create_main_frame()
self.create_status_bar()
self.create_list_dock()
self.create_info_dock()
self.create_internal_console()
self.connect_thoth()
self.show()
if DEMO:
self.thoth.open('testfiles/flatfile/topo.flat')
self.thoth.open('testfiles/flatfile/iv.flat')
self.thoth.open('testfiles/flatfile/grid.flat')
def connect_thoth(self):
QObject.connect(self.thoth, SIGNAL("item_registred"),
self.thoth.create_window)
#QObject.connect(self.thoth, SIGNAL("window_registred(QWidget)"), self.mdi_area.addSubWindow)
QObject.connect(self.thoth, SIGNAL("window_registred"),
self.add_sub_window)
def add_sub_window(self, window):
self.mdi_area.addSubWindow(window)
self.list_widget.addItem(window.windowTitle())
window.show()
def create_internal_console(self):
if DockableConsole is None:
self.console = None
else:
import time, scipy.signal as sps, scipy.ndimage as spi
import sys, os
import numpy as np
ns = {
'thoth': self.thoth,
'np': np,
'sps': sps,
'spi': spi,
'os': os,
'sys': sys,
'time': time
}
msg = "Example: thoth.get_items()[0]\n"\
"Modules imported at startup: "\
"os, sys, os.path as osp, time, "\
"numpy as np, scipy.signal as sps, scipy.ndimage as spi"
self.console = DockableConsole(self, namespace=ns, message=msg)
console_dock = QDockWidget(_('Console'))
self.addDockWidget(Qt.BottomDockWidgetArea, console_dock)
console_dock.setWidget(self.console)
#self.connect(self.console.interpreter.widget_proxy,
#SIGNAL("new_prompt(QString)"),
#lambda txt: self.refresh_lists())
def about(self):
QMessageBox.about( self, _("About ")+APP_NAME,
"""<b>%s</b> v%s<br>%s<p>
<br>Copyright © François Bianco, University of Geneva
<br>[email protected]
<br>Distributed under the GNU GPL License v.3
""" % \
(APP_NAME, VERSION, APP_DESC))
def create_main_frame(self):
self.mdi_area = QMdiArea()
self.connect(self.mdi_area,
SIGNAL("subWindowActivated(QMdiSubWindow)"),
self.update_info)
self.setCentralWidget(self.mdi_area)
def update_info(self, window):
self.info_widget.clear()
self.info_widget.addItem(window.windowTitle())
def create_list_dock(self):
list_dock = QDockWidget(_('Files'))
self.addDockWidget(Qt.RightDockWidgetArea, list_dock)
self.list_widget = QListWidget()
self.connect(
self.list_widget,
SIGNAL("currentItemChanged( QListWidgetItem, QListWidgetItem)"),
self.change_selection)
list_dock.setWidget(self.list_widget)
def change_selection(self, current, previous):
pass
def create_info_dock(self):
info_dock = QDockWidget(_('Info'))
self.addDockWidget(Qt.RightDockWidgetArea, info_dock)
self.info_widget = QListWidget()
info_dock.setWidget(self.info_widget)
def create_status_bar(self):
self.statusBar().showMessage(_("Open a file"))
def create_menus(self):
file_menu = self.menuBar().addMenu(_("&File"))
open_file_action = create_action(self,
_("&Open File"),
shortcut="Ctrl+O",
triggered=self.thoth.open,
tip=_("Open a measurement file"))
#save_plot_action = create_action(self,"&Save all the plots",
#shortcut="Ctrl+S", triggered=self.save_plots,
#tip="Save all the plots")
quit_action = create_action(self,
_("&Quit"),
triggered=self.close,
shortcut="Ctrl+Q",
tip=_("Close the application"))
add_actions(file_menu, (open_file_action, None, quit_action))
help_menu = self.menuBar().addMenu("&Help")
about_action = create_action(self,
_("&About"),
shortcut='F1',
triggered=self.about,
tip=_('About Thoth'))
add_actions(help_menu, (about_action, ))
