def extract_from_full(self, url):
'''
Purpose: Extract the full info when html is available
'''
title = ''
abstract = ''
methodology = ''
acknowledgments = ''
si = self.solr
thisArticle = webdriver.Firefox() #Remote(command_executor='http://127.0.0.1:4444/wd/hub', desired_capabilities=DesiredCapabilities.FIREFOX) #Firefox()
thisArticle.get(url)
time.sleep(3)
pageMetaData = parser.parse1('meta',url)[1]
title = thisArticle.title
try:
abstract = (thisArticle.find_element_by_id("abstract").find_element_by_tag_name('p')).text.encode('utf-8')
sections = thisArticle.find_elements_by_xpath("//article[contains(@id,'main-content')]/section[contains(@id,'eft')]")
for section in sections:
try:
if section.find_element_by_tag_name('h2').text in 'Acknowledgments':
for i in section.find_elements_by_tag_name('p'):
acknowledgments += i.text.encode('utf-8')
except:
try:
if True in [i in ['data', 'methodology', 'method'] for i in (section.find_element_by_tag_name('h2').text).lower().split(' ')]:
# methodology = section.find_element_by_tag_name('p').text.encode('utf-8')
for i in section.find_elements_by_tag_name('p'):
methodology += i.text.encode('utf-8')
except:
continue
except:
# this article is not a 'research' document, maybe like http://onlinelibrary.wiley.com/doi/10.1002/2015EF000307/full
print 'skipping %s' %url
self.f.write('skipping %s\n' %url)
#TODO: place extractors here to get spatial & temporal data from extracted text to index
thisArticle.close()
thisArticleJSON = {'id':url, 'title': title, 'abstract':abstract, 'methodology':methodology, 'acknowledgment':acknowledgments}
#add pageMetadata
# thisArticleJSON.update(json.loads(pageMetaData))
partMeta = {}
i = json.loads(pageMetaData.encode('utf-8'))
partMeta = {"citation_author":i["citation_author"], "article_references":i["article_references"].encode('utf-8'),"citation_author_institution":i["citation_author_institution"], \
"citation_doi":i["citation_doi"].encode('utf-8'), "citation_journal_title":i["citation_journal_title"].encode('utf-8'),\
"citation_keywords":i["citation_keywords"],"citation_publisher":i["citation_publisher"].encode('utf-8'), "citation_online_date":i["citation_online_date"].encode('utf-8')}
thisArticleJSON.update(partMeta)
#index data into solr
si.add(thisArticleJSON)
self.f.write('added entry to solr DB\n')
'''
if 'Date/Time Original' in metadata:
postDate = metadata['Date/Time Original']
else
postDate =''
else:
content_type = ''
description=''
itemKeywords=''
title=''
'''
use tika-server to get content in plain text. A new .geot file is created with contents in plain text, which will be sent to tika-server with geo-parsing
capabilitites to extract geo related metadata
'''
textResponse = parser.parse1('text', curFilePath)
if not textResponse:
parsedText =''
else:
parsedText = textResponse[1]
'''
to parse out 'posted date' of gun ads for ad if we are dealing with html pages
'''
if postDate == '':
postDateStart = parsedText.find('Posted')
if(postDateStart!=-1):
postDate = parsedText[postDateStart+8:postDateStart+40]
else:
postDate = '1900-01-01 00:00:00'
else
def extract_from_full(self, url):
'''
Purpose: Extract the full info when html is available
'''
title = ''
abstract = ''
methodology = ''
acknowledgments = ''
si = self.solr
thisArticle = webdriver.PhantomJS()
thisArticle.get(url)
time.sleep(3)
pageMetaData = parser.parse1('meta',url)[1]
title = thisArticle.title
try:
abstract = (thisArticle.find_element_by_id("abstract").find_element_by_tag_name('p')).text.encode('utf-8')
sections = thisArticle.find_elements_by_xpath("//article[contains(@id,'main-content')]/section[contains(@id,'eft')]")
for section in sections:
try:
if section.find_element_by_tag_name('h2').text in 'Acknowledgments':
for i in section.find_elements_by_tag_name('p'):
acknowledgments += i.text.encode('utf-8')
except:
try:
if True in [i in ['data', 'methodology', 'method'] for i in (section.find_element_by_tag_name('h2').text).lower().split(' ')]:
# methodology = section.find_element_by_tag_name('p').text.encode('utf-8')
for i in section.find_elements_by_tag_name('p'):
methodology += i.text.encode('utf-8')
except:
continue
except:
# this article is not a 'research' document, maybe like http://onlinelibrary.wiley.com/doi/10.1002/2015EF000307/full
print 'skipping %s' %url
self.f.write('skipping %s\n' %url)
#TODO: place extractors here to get spatial & temporal data from extracted text to index
thisArticle.close()
thisArticleJSON = {'id':url, 'title': title, 'abstract':abstract, 'methodology':methodology, 'acknowledgment':acknowledgments}
#add pageMetadata
# thisArticleJSON.update(json.loads(pageMetaData))
partMeta = {}
i = json.loads(pageMetaData.encode('utf-8'))
partMeta = {"citation_author":i["citation_author"], "article_references":i["article_references"].encode('utf-8'),"citation_author_institution":i["citation_author_institution"], \
"citation_doi":i["citation_doi"].encode('utf-8'), "citation_journal_title":i["citation_journal_title"].encode('utf-8'),\
"citation_keywords":i["citation_keywords"],"citation_publisher":i["citation_publisher"].encode('utf-8'), "citation_online_date":i["citation_online_date"].encode('utf-8')}
thisArticleJSON.update(partMeta)
#save json file
if not os.path.exists(os.getcwd()+'/jsonFiles'):
os.makedirs(os.getcwd()+'/jsonFiles')
filenameJSON = os.getcwd()+'/jsonFiles/'+url.split('://')[1].replace('/','-')+'.json'
with open(filenameJSON, 'w+') as f:
json.dump(thisArticleJSON,f)
#index data into solr
if self.solrIntegration == True:
si.add(thisArticleJSON)
self.f.write('added entry to solr DB\n')
