def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
# get a properly formatted newick tree with branch lengths
T, B, N = FtreeIO.newick_to_TBN(fs.tree)
# get the vertex valuations
reflect = False
all_valuations = TB_to_harmonic_valuations(T, B, reflect)
fiedler_valuations = all_valuations[1]
# do the layout
v_to_location = FtreeAux.equal_daylight_layout(T, B, 3)
# get the vertex list and the initial vertex locations
vertices = Ftree.T_to_leaves(T) + Ftree.T_to_internal_vertices(T)
X_in = np.array([tuple(v_to_location[v]) for v in vertices])
# fit the tree to the physical size
physical_size = (fs.width, fs.height)
theta = layout.get_best_angle(X_in, physical_size)
X = layout.rotate_2d_centroid(X_in, theta)
sz = layout.get_axis_aligned_size(X)
sf = layout.get_scaling_factor(sz, physical_size)
X *= sf
# get the map from id to location for the final tree layout
v_to_location = dict((v, tuple(r)) for v, r in zip(vertices, X))
# draw the image
context = TikzContext()
draw_plain_branches_ftree(T, B, context, v_to_location)
draw_ticks_ftree(T, B, context, fiedler_valuations, v_to_location)
draw_labels_ftree(T, N, context, v_to_location)
context.finish()
# get the response
tikzpicture = context.get_text()
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
# get a properly formatted newick tree with branch lengths
T, B, N = FtreeIO.newick_to_TBN(fs.tree)
# get the vertex valuations
reflect = False
all_valuations = TB_to_harmonic_valuations(T, B, reflect)
fiedler_valuations = all_valuations[1]
# do the layout
v_to_location = FtreeAux.equal_daylight_layout(T, B, 3)
# get the vertex list and the initial vertex locations
vertices = Ftree.T_to_leaves(T) + Ftree.T_to_internal_vertices(T)
X_in = np.array([tuple(v_to_location[v]) for v in vertices])
# fit the tree to the physical size
physical_size = (fs.width, fs.height)
theta = layout.get_best_angle(X_in, physical_size)
X = layout.rotate_2d_centroid(X_in, theta)
sz = layout.get_axis_aligned_size(X)
sf = layout.get_scaling_factor(sz, physical_size)
X *= sf
# get the map from id to location for the final tree layout
v_to_location = dict((v, tuple(r)) for v, r in zip(vertices, X))
# draw the image
context = TikzContext()
draw_plain_branches_ftree(T, B, context, v_to_location)
draw_ticks_ftree(T, B, context, fiedler_valuations, v_to_location)
draw_labels_ftree(T, N, context, v_to_location)
context.finish()
# get the response
tikzpicture = context.get_text()
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = '\n'.join(get_tikz_lines(fs))
tikzpicture = tikz.get_picture(tikz_body, 'auto')
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = '\n'.join(get_tikz_lines(fs))
tikzpicture = tikz.get_picture(tikz_body, 'auto')
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = "\n".join(get_tikz_lines(fs))
tikzpicture = tikz.get_picture(tikz_body, "auto")
return tikz.get_response(tikzpicture, fs.tikzformat, tikz.get_w_color_package_set(), tikz.get_w_color_preamble())
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = get_tikz_body(fs)
tikzpicture = tikz.get_picture(tikz_body, "auto")
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = get_tikz_body(fs)
tikzpicture = tikz.get_picture(tikz_body, 'auto')
tikzlibraries = ['decorations.pathreplacing']
return tikz.get_response(
tikzpicture, fs.tikzformat, tikzlibraries=tikzlibraries)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = get_tikzpicture_body(fs.ncurves, fs.nsegs, fs.morph)
tikzpicture = tikz.get_picture(tikz_body, 'auto')
return tikz.get_response(
tikzpicture, fs.tikzformat,
tikz.get_w_color_package_set(), tikz.get_w_color_preamble())
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = get_tikz_body(fs)
tikzpicture = tikz.get_picture(tikz_body, 'auto')
tikzlibraries = ['decorations.pathreplacing']
return tikz.get_response(tikzpicture,
fs.tikzformat,
tikzlibraries=tikzlibraries)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body_lines = TreeProjection.get_tikz_lines(fs.tree,
fs.eigenvector_index,
fs.yaw, fs.pitch)
tikz_body = '\n'.join(tikz_body_lines)
options = {'x': '1em', 'y': '1em', 'inner sep': '0pt'}
tikzpicture = tikz.get_picture(tikz_body, **options)
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = "\n".join(get_tikz_lines())
tikzpicture = tikz.get_picture(tikz_body, "auto")
packages = ["color"]
preamble_lines = []
preamble_lines.append(tikz.get_w_color_preamble())
preamble_lines.extend(get_tikz_style_definitions())
preamble = "\n".join(preamble_lines)
return tikz.get_response(tikzpicture, fs.tikzformat, packages, preamble)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body = '\n'.join(get_tikz_lines())
tikzpicture = tikz.get_picture(tikz_body, 'auto')
packages = ['color']
preamble_lines = []
preamble_lines.append(tikz.get_w_color_preamble())
preamble_lines.extend(get_tikz_style_definitions())
preamble = '\n'.join(preamble_lines)
return tikz.get_response(tikzpicture, fs.tikzformat, packages, preamble)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
tikz_body_lines = TreeProjection.get_tikz_lines(
fs.tree, fs.eigenvector_index, fs.yaw, fs.pitch)
tikz_body = '\n'.join(tikz_body_lines)
options = {
'x' : '1em',
'y' : '1em',
'inner sep': '0pt'}
tikzpicture = tikz.get_picture(tikz_body, **options)
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
# decide which hardcoded tree to use
if fs.six_leaves:
layout = SixLeafLayout()
elif fs.seven_leaves:
layout = SevenLeafLayout()
# decide which subtrees to show
show_full_tree = False
show_pruned_trees = False
if fs.full_tree_only:
show_full_tree = True
if fs.pruned_trees_only:
show_pruned_trees = True
if fs.all_trees:
show_full_tree = True
show_pruned_trees = True
# get the texts
tikz_body = layout.get_tikz_contents(show_full_tree, show_pruned_trees)
tikzpicture = tikz.get_picture(tikz_body, 'auto', scale=fs.scaling_factor)
return tikz.get_response(tikzpicture, fs.tikzformat)
def get_response_content(fs):
"""
@param fs: a FieldStorage object containing the cgi arguments
@return: the response
"""
# decide which hardcoded tree to use
if fs.six_leaves:
layout = SixLeafLayout()
elif fs.seven_leaves:
layout = SevenLeafLayout()
# decide which subtrees to show
show_full_tree = False
show_pruned_trees = False
if fs.full_tree_only:
show_full_tree = True
if fs.pruned_trees_only:
show_pruned_trees = True
if fs.all_trees:
show_full_tree = True
show_pruned_trees = True
# get the texts
tikz_body = layout.get_tikz_contents(show_full_tree, show_pruned_trees)
tikzpicture = tikz.get_picture(tikz_body, 'auto', scale=fs.scaling_factor)
return tikz.get_response(tikzpicture, fs.tikzformat)