def build_universal_config(config_dir):
"""
Build uni_config.yaml in the config_dir
:param config_dir: directory where exp_description.yaml
:raise:
"""
config_yaml_filename = os.path.join(config_dir,'exp_description.yaml')
res=yamlutils.read_yaml(config_yaml_filename)[0]
# pprint(res)
if not 'frames' in res:
logging.error(str.format('Section FRAMES not found in config file {0}',config_yaml_filename))
raise AttributeError
uc = UniversalConfigBuilder()
#TODO: fix this hack
uc.add_section({'preprocess_config': res['preprocess_config']})
uc.add_section({'description': res['description']})
groups = get_groups(res['frames'])
start_data_angle=0
for group_name in natsorted(groups.keys()):
group = groups[group_name]
files,start_data_angle = get_files_in_group(group, root=config_dir, start_data_angle=start_data_angle)
for f in files:
uc.add_frame(group_name=group_name, frame_type=f['type'], file_name=f['name'],
image_format=f['image_format'], angle=f['angle'], exposure_time=f['exposure_time'],
rotation_angle=f['rotation_angle'])
uc.save2yaml(os.path.join(config_dir,'uni_config.yaml'))
def build_universal_config(config_dir):
"""
Build uni_config.yaml in the config_dir
:param config_dir: directory where exp_description.yaml
:raise:
"""
config_yaml_filename = os.path.join(config_dir,'exp_description.yaml')
res=yamlutils.read_yaml(config_yaml_filename)[0]
# pprint(res)
if not 'frames' in res:
logging.error(str.format('Section FRAMES not found in config file {0}',config_yaml_filename))
raise AttributeError
uc = UniversalConfigBuilder()
#TODO: fix this hack
uc.add_section({'preprocess_config': res['preprocess_config']})
uc.add_section({'description': res['description']})
data_dir=os.path.join(config_dir,'Data')
files=glob.glob(os.path.join(data_dir,'*.tif'))
for f_path in sorted(files):
fname=os.path.split(f_path)[-1]
f_prefix=fname.split('.')[0]
if f_prefix=='eb':
uc.add_frame(group_name='0',frame_type='empty',file_name=f_path,image_format='tiff',angle=0)
elif f_prefix=='dc':
uc.add_frame(group_name='0',frame_type='dark',file_name=f_path,image_format='tiff',angle=0)
else:
angle=float(f_prefix.replace(',','.'))
uc.add_frame(group_name='0',frame_type='data',file_name=f_path,image_format='tiff',angle=angle)
uc.save2yaml(os.path.join(config_dir,'uni_config.yaml'))
def build_universal_config(config_dir):
"""
Build uni_config.yaml in the config_dir
:param config_dir: directory where exp_description.yaml
:raise:
"""
config_yaml_filename = os.path.join(config_dir,'exp_description.yaml')
res=yamlutils.read_yaml(config_yaml_filename)[0]
# pprint(res)
if not 'frames' in res:
logging.error(str.format('Section FRAMES not found in config file {0}',config_yaml_filename))
raise AttributeError
uc = UniversalConfigBuilder()
#TODO: fix this hack
uc.add_section({'preprocess_config': res['preprocess_config']})
uc.add_section({'description': res['description']})
files=get_files(config_dir)
for f in files:
uc.add_frame(group_name='0', frame_type=f['type'], file_name=f['name'],
image_format=f['image_format'], angle=f['angle'], exposure_time=f['exposure_time'],
rotation_angle=0)
#add dark type by value
if 'dark_value' in res['frames']:
uc.add_frame(group_name='0', frame_type='dark', file_name=res['frames']['dark_value'],
image_format='number', angle=0, exposure_time=1, rotation_angle=0)
uc.save2yaml(os.path.join(config_dir,'uni_config.yaml'))
