def activate_repository( trans, repository ):
"""Activate an installed tool shed repository that has been marked as deactivated."""
repository_clone_url = suc.generate_clone_url_for_installed_repository( trans.app, repository )
shed_tool_conf, tool_path, relative_install_dir = suc.get_tool_panel_config_tool_path_install_dir( trans.app, repository )
repository.deleted = False
repository.status = trans.install_model.ToolShedRepository.installation_status.INSTALLED
if repository.includes_tools_for_display_in_tool_panel:
metadata = repository.metadata
repository_tools_tups = suc.get_repository_tools_tups( trans.app, metadata )
# Reload tools into the appropriate tool panel section.
tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
tool_util.add_to_tool_panel( trans.app,
repository.name,
repository_clone_url,
repository.installed_changeset_revision,
repository_tools_tups,
repository.owner,
shed_tool_conf,
tool_panel_dict,
new_install=False )
if repository.includes_data_managers:
tp, data_manager_relative_install_dir = repository.get_tool_relative_path( trans.app )
# Hack to add repository.name here, which is actually the root of the installed repository
data_manager_relative_install_dir = os.path.join( data_manager_relative_install_dir, repository.name )
new_data_managers = data_manager_util.install_data_managers( trans.app,
trans.app.config.shed_data_manager_config_file,
metadata,
repository.get_shed_config_dict( trans.app ),
data_manager_relative_install_dir,
repository,
repository_tools_tups )
trans.install_model.context.add( repository )
trans.install_model.context.flush()
if repository.includes_datatypes:
if tool_path:
repository_install_dir = os.path.abspath( os.path.join( tool_path, relative_install_dir ) )
else:
repository_install_dir = os.path.abspath( relative_install_dir )
# Activate proprietary datatypes.
installed_repository_dict = datatype_util.load_installed_datatypes( trans.app, repository, repository_install_dir, deactivate=False )
if installed_repository_dict:
converter_path = installed_repository_dict.get( 'converter_path' )
if converter_path is not None:
datatype_util.load_installed_datatype_converters( trans.app, installed_repository_dict, deactivate=False )
display_path = installed_repository_dict.get( 'display_path' )
if display_path is not None:
datatype_util.load_installed_display_applications( trans.app, installed_repository_dict, deactivate=False )
def activate_repository( trans, repository ):
"""Activate an installed tool shed repository that has been marked as deactivated."""
repository_clone_url = suc.generate_clone_url_for_installed_repository( trans.app, repository )
shed_tool_conf, tool_path, relative_install_dir = suc.get_tool_panel_config_tool_path_install_dir( trans.app, repository )
repository.deleted = False
repository.status = trans.model.ToolShedRepository.installation_status.INSTALLED
if repository.includes_tools_for_display_in_tool_panel:
metadata = repository.metadata
repository_tools_tups = suc.get_repository_tools_tups( trans.app, metadata )
# Reload tools into the appropriate tool panel section.
tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
tool_util.add_to_tool_panel( trans.app,
repository.name,
repository_clone_url,
repository.installed_changeset_revision,
repository_tools_tups,
repository.owner,
shed_tool_conf,
tool_panel_dict,
new_install=False )
if repository.includes_data_managers:
tp, data_manager_relative_install_dir = repository.get_tool_relative_path( trans.app )
# Hack to add repository.name here, which is actually the root of the installed repository
data_manager_relative_install_dir = os.path.join( data_manager_relative_install_dir, repository.name )
new_data_managers = data_manager_util.install_data_managers( trans.app,
trans.app.config.shed_data_manager_config_file,
metadata,
repository.get_shed_config_dict( trans.app ),
data_manager_relative_install_dir,
repository,
repository_tools_tups )
trans.sa_session.add( repository )
trans.sa_session.flush()
if repository.includes_datatypes:
if tool_path:
repository_install_dir = os.path.abspath( os.path.join( tool_path, relative_install_dir ) )
else:
repository_install_dir = os.path.abspath( relative_install_dir )
# Activate proprietary datatypes.
installed_repository_dict = datatype_util.load_installed_datatypes( trans.app, repository, repository_install_dir, deactivate=False )
if installed_repository_dict and 'converter_path' in installed_repository_dict:
datatype_util.load_installed_datatype_converters( trans.app, installed_repository_dict, deactivate=False )
if installed_repository_dict and 'display_path' in installed_repository_dict:
datatype_util.load_installed_display_applications( trans.app, installed_repository_dict, deactivate=False )
def load_proprietary_converters_and_display_applications( self, deactivate=False ):
for installed_repository_dict in self.installed_repository_dicts:
if installed_repository_dict[ 'converter_path' ]:
datatype_util.load_installed_datatype_converters( self.app, installed_repository_dict, deactivate=deactivate )
if installed_repository_dict[ 'display_path' ]:
datatype_util.load_installed_display_applications( self.app, installed_repository_dict, deactivate=deactivate )
