Python all_tool_classes Examples

Example #1

File: install_tools.py Project: xuwei684/viral-ngs

def install_all_tools():
    sumtime = 0.0
    n_tools = 0
    n_success = 0
    for tool_class in tools.all_tool_classes():
        t = tool_class()
        print("installing %s .. " % tool_class.__name__, end="")
        sys.stdout.flush()
        runtime = timeit.timeit(t.install)
        sumtime += runtime
        success = t.is_installed()
        print("SUCCESS" if success else "FAILED", end="")
        print(" (%0.1f seconds)" % runtime)
        sys.stdout.flush()
        if success:
            n_success += 1
        n_tools += 1
    print("Total %d tools attempted, %d succeeded, %d failed, cumulative install time %0.1f seconds" % (
        n_tools, n_success, n_tools - n_success, sumtime))
    return (n_tools == n_success)

Example #2

# Unit tests for tools/__init__.py

__author__ = "*****@*****.**"

import tools
from tools import *
import pytest


@pytest.fixture(params=tools.all_tool_classes())
def tool_class(request):
    print(request.param)
    return request.param


def test_tool_install(tool_class):
    t = tool_class()
    t.install()
    assert t.is_installed()

Example #3

File: test_tools.py Project: tianyabeef/viral-ngs

# Unit tests for tools/__init__.py

__author__ = "*****@*****.**"

import tools
from tools import *
import pytest

@pytest.fixture(params=tools.all_tool_classes())
def tool_class(request):
    print(request.param)
    return request.param

def test_tool_install(tool_class):
    t = tool_class()
    t.install()
    assert t.is_installed()