Python search_all_Cnumber_from_label Examples

Example #1

File: test_tools.py Project: sato-masayukidesu/KNApSAcK_search

 def test_search_all_Cnumber_from_label(self):
     """
     test for search_all_Cnumber_from_label
     """
     expected = ([
         'C00001546', 'C00017854', 'C00017855', 'C00027106', 'C00036583',
         'C00037061', 'C00045424', 'C00045427'
     ], 8)
     label = "N1b-C2c-S2a"
     actual = tools.search_all_Cnumber_from_label(label)
     self.assertEqual(actual, expected)

Example #2

# 属中の種の数とか知りたい
# classes.toolsを作りたい。

# In[30]:

print(cag.get_Cnumber_from_label("C1a-C1z-C5x"))

# In[31]:

from tools import search_all_Cnumber_from_label
from tools import get_genuses
from tools import get_name

# In[32]:

ac = search_all_Cnumber_from_label("C1a-C1z-C5x")

# In[35]:

print(len(ac[0]))

# In[36]:

ac2 = search_all_Cnumber_from_label("C8-C8-C8-C8-C8-C8-C1-C8")

# In[75]:

print(len(ac2))

# In[37]:

Example #3

    for unit in units[:-1]:
        temp = unit.split()
        kosuu[(temp[1], temp[2])] = kosuu.get((temp[1], temp[2]),0) + int(temp[3])
sorted(kosuu.items(), reverse=True, key=lambda x: x[1])


# In[28]:

print(len(list(spedict2.items())[0][1]))


# 共発現しているのは14って書いてあるところ周辺

# In[29]:

all1 = tools.search_all_Cnumber_from_label('C8x-C8x-C8x-C8x-C8y-C8y-C8y-N4x-C8y')
print(len(all1))


# In[30]:

all2 = tools.search_all_Cnumber_from_label('C8x-C8y-C8y-C8y-C8y-C8y-N4x-C8y-C8y')
print(len(all2))


# In[31]:

print(all2)


# In[32]:

Example #4

File: get_Fabaceae.py Project: sato-masayukidesu/KNApSAcK_search

# In[29]:

from rdkit.Chem import Draw
img = Draw.MolsToGridImage(mol_list,
                           legends=sorted(list(Ery.items())[0][1]),
                           subImgSize=(400, 400))
img.save("Faba_test-2.png")

# In[11]:

from tools import search_all_Cnumber_from_label

# In[12]:

ac = search_all_Cnumber_from_label('C1x-N1y-C1z')

# In[15]:

print(len(ac[0]))

# In[16]:

from tools import make_kcfs

# In[17]:

print(Ery)

# In[27]:

Example #5

File: get_Poaceae.py Project: sato-masayukidesu/KNApSAcK_search

sorted(kosuu.items(), reverse=True, key=lambda x: x[1])

# In[80]:

path = "Poaceae/Oryza/only"
kosuu2 = dict()
with open(path + "kcfscount.txt") as f:
    units = f.read().split("\n")
    for unit in units[:-1]:
        temp = unit.split()
        kosuu2[(temp[1], temp[2])] = kosuu2.get(
            (temp[1], temp[2]), 0) + int(temp[3])

# In[82]:

sorted(kosuu2.items(), reverse=True, key=lambda x: x[1])

# In[72]:

len(Cnlist)

# In[84]:

al = search_all_Cnumber_from_label("C1x-C1z-C2b")

# In[85]:

print(len(al))

# In[ ]:

Example #6

        temp = unit.split()
        kosuu[(temp[1], temp[2])] = kosuu.get(
            (temp[1], temp[2]), 0) + int(temp[3])
sorted(kosuu.items(), reverse=True, key=lambda x: x[1])

# In[15]:

print(len(list(spedict2.items())[0][1]))

# In[17]:

import tools

# In[21]:

all1 = tools.search_all_Cnumber_from_label("C1x-C1x-C1x-C1z-C1y-C1z")
print(all1)

# 結構複雑な構造なのにこんなにあるのは予想外
# ringのみを抜き出すように変更したい。

# In[60]:

all2 = tools.search_all_Cnumber_from_label(
    'C1(C1)-C1-C1-C1-C1(C1)(C1)-C1-C1-C1-C1-C1-C2-C2')
print(all2)
print(len(all2))

# In[61]:

all3 = tools.search_all_Cnumber_from_label('C1-C1-C1-C1-C1-N1-C1-C1')