def forward(self, src_tokens, src_lengths, **kwargs):
"""
src_tokens: padded tensor (B, T, C * feat)
src_lengths: tensor of original lengths of input utterances (B,)
"""
B, T, _ = src_tokens.size()
x = src_tokens.transpose(
1, 2).contiguous() # (B, feat, T) assuming C == 1
for layer_idx in range(len(self.conv_layers)):
x = self.conv_layers[layer_idx](x)
x = F.glu(x, dim=1)
x = self.dropouts[layer_idx](x)
x = x.transpose(1, 2).contiguous() # (B, T, 908)
x = self.linear_layers[0](x)
x = F.glu(x, dim=2)
x = self.dropouts[-1](x)
x = self.linear_layers[1](x)
assert x.size(0) == B
assert x.size(1) == T
encoder_out = x.transpose(0, 1) # (T, B, vocab_size)
# need to debug this -- find a simpler/elegant way in pytorch APIs
encoder_padding_mask = (torch.arange(T).view(
1, T).expand(B, -1).to(x.device) >= src_lengths.view(B, 1).expand(
-1, T)).t() # (B x T) -> (T x B)
return {
"encoder_out": encoder_out, # (T, B, vocab_size)
"encoder_padding_mask": encoder_padding_mask, # (T, B)
}
def forward(self, x):
z1 = F.glu(self.fc1(x))
z2 = F.glu(self.fc2(z1))
out = self.fc3(z2)
# z3 = F.relu(self.fc3(z2))
# out = self.fc4(z3)
return out
def forward(self, g, features):
x = F.leaky_relu(F.glu(self.layer1(g, features)))
x = F.leaky_relu(F.glu(self.layer2(g, x)))
x = F.leaky_relu(F.glu(self.layer3(g, x)))
x = F.leaky_relu(F.glu(self.layer4(g, x)))
x = self.layer5(g, x)
return x
def forward(self, v, t):
v = F.glu(self.norm1(v))
t = F.glu(self.norm2(t))
t = torch.sum(t, dim=1)
att = v * t.unsqueeze(1).repeat(1, IM_K, 1)
att = F.softmax(self.norm3(self.drop1(att)), 1)
v = (att * v).sum(1)
tv = self.drop2(t * v)
tv = F.glu(self.norm4(tv))
return tv, att
def forward(self, x):
x = F.relu(self.conv1(x))
x = self.res1(x)
x = self.pool1(x)
x = self.res2(x)
x = self.pool2(x)
x = self.res3(x)
x = x.view(-1, 980)
x = F.glu(self.dense1(x))
x = self.dropout1(x)
x = F.glu(self.dense2(x))
x = self.dropout2(x)
x = F.log_softmax(self.dense3(x))
return x
def forward(self, x):
'''
:param x: (bz, seq_len, dim)
:return: (bz, dim)
'''
bs, seq_len, _ = x.size()
# seq_range = torch.arange(0, seq_len, device=x.device, dtype=x.dtype)
# pos_embed = self.pos_embedding(seq_range)
seq_range = torch.arange(0, seq_len, device=x.device, dtype=torch.long).unsqueeze(0).repeat(bs, 1)
pos_embed = self.pos_embedding(seq_range)
x = x + pos_embed
x = F.dropout(x, p=self.dropout, training=self.training)
h = self.embed2hn(x)
# (bz, dim, seq_len)
conv_in = h.transpose(1, 2).contiguous()
for conv in self.convs:
conv_in = F.dropout(conv_in, p=self.dropout, training=self.training)
conv_out = conv(conv_in)
conv_out = F.glu(conv_out, dim=1)
conv_in = (conv_in + conv_out) * self.scale
# (bs, dim, seq_len) -> (bz, dim, 1) -> (bz, dim)
conv_out = self.max_pool(conv_in).squeeze(-1)
# conv_out = F.max_pool1d(conv_in, kernel_size=conv_in.size(-1)).squeeze(-1)
return self.fc(conv_out)
def forward(self, src_tokens):
src_lengths = src_tokens.shape[1]
batch_size = src_tokens.shape[0]
pos = self.pos_embedding(
torch.arange(0,
src_lengths).unsqueeze(0).repeat(batch_size,
1).to(self.device))
tok = self.tok_embedding(
src_tokens) #tok = pos = [batch size, src len, emb dim]
x = self.dropout(tok + pos) #x = [batch size, src len, emb dim]
conv_input = self.emb2hid(
x) #conv_input = [batch size, src len, hid dim]
conv_input = conv_input.permute(
0, 2, 1) #conv_input = [batch size, hid dim, src len]
for i, conv in enumerate(self.convs):
conved = conv(self.dropout(
conv_input)) #conved = [batch size, 2 * hid dim, src len]
conved = F.glu(conved,
dim=1) #conved = [batch size, hid dim, src len]
conved = (conved + conv_input
) * self.scale #conved = [batch size, hid dim, src len]
conv_input = conved
conved = self.hid2emb(conved.permute(
0, 2, 1)) #conved = [batch size, src len, emb dim]
combined = (conved +
x) * self.scale #combined = [batch size, src len, emb dim]
return conved, combined
def forward(self, x):
""" Performs conditioning augmentation using the reparametrization trick.
Parameters:
x (torch.Tensor): vector of shape input_dim, can be used as the output of the text encoder
Returns:
condition_vector (torch.Tensor of shape condition_dim):
the "sampled" version of the text encoding
mu (torch.Tensor of shape condition_dim): mean of the text encoding
logvar (torch.Tensor of shape condition_dim): variance of the text encoding
"""
# Compute the mean and stand deviation:
pre_conditioning = F.glu(self.fc(x))
mu = pre_conditioning[:, :self.condition_dim]
log_var = pre_conditioning[:, self.condition_dim:]
std = torch.exp(log_var / 2) # std must be non-zero
# reparameterization trick:
# multiply the std by a normal distributed noise and add the mean
# in order to sample the conditionining without disabling the backpropagation
# (cannot propagate through a random node)
epsilon = torch.randn_like(std)
condition_vector = mu + epsilon * std
# Return all of the results
return condition_vector, mu, log_var
def forward(self, target, enc_attn, source_seq_out):
# batch, seq_len_tgt, dim
inputs = self.embedding(target)
# batch, seq_len_tgt, hidden
outputs = self.affine(inputs)
for i in range(self.layers):
# batch, hidden, seq_len_tgt
outputs = outputs.permute(0, 2, 1)
# batch, 2*hidden, seq_len_tgt
outputs = self.conv(outputs)
# This is the residual connection,
# for the output of the conv will add kernel_size / 2 elements
# before and after the origin input
if i > 0:
conv_out = conv_out + outputs
# batch, hidden, seq_len_tgt
outputs = F.glu(outputs, dim=1)
# batch, seq_len_tgt, hidden
outputs = outputs.transpose(1, 2)
# A, B: batch, seq_len_tgt, hidden / 2
A, B = outputs.split(self.hidden_size, 2)
# A2: batch * seq_len_tgt, hidden / 2
A2 = A.contiguous().view(-1, A.size(2))
# B2: batch * seq_len_tgt, hidden / 2
B2 = B.contiguous().view(-1, B.size(2))
# attn: batch * seq_len_tgt, hidden / 2
dec_attn = torch.mul(A2, self.softmax(B2))
# attn: batch * seq_len_tgt, hidden
dec_attn2 = self.mapping(dec_attn)
dec_attn2 = dec_attn2.view(A.size(0), A.size(1), -1)
# enc_attn1: batch, seq_len_src, hidden_size
enc_attn = enc_attn.view(A.size(0), -1, A.size(2))
# dec_attn1: batch, seq_len_tgt, hidden_size
dec_attn = dec_attn.view(A.size(0), -1, A.size(2))
# attn_matrix: batch, seq_len_tgt, seq_len_src
_attn_matrix = torch.bmm(dec_attn, enc_attn.transpose(1, 2))
attn_matrix = self.softmax(
_attn_matrix.view(-1, _attn_matrix.size(2)))
# normalized attn_matrix: batch, seq_len_tgt, seq_len_src
attn_matrix = attn_matrix.view(_attn_matrix.size(0),
_attn_matrix.size(1), -1)
# attns: batch, seq_len_tgt, hidden_size
attns = torch.bmm(attn_matrix, source_seq_out)
# outpus: batch, seq_len_tgt, hidden_size
outputs = dec_attn2 + attns
# outpus: batch, seq_len_tgt, vocab_size
outputs = F.log_softmax(self.fc(outputs))
return outputs
def forward(self, xs):
"""Forward pass.
Args:
xs (FloatTensor): `[B, T, d_model]`
Returns:
xs (FloatTensor): `[B, T, d_model]`
"""
bs, xmax, dim = xs.size()
xs = xs.transpose(2, 1).contiguous() # `[B, C, T]`
xs = self.pointwise_conv1(xs) # `[B, 2 * C, T]`
xs = F.glu(xs, dim=1) # `[B, C, T]`
xs = self.depthwise_conv(xs) # `[B, C, T]`
if self.causal:
xs = xs[:, :, :-self.padding]
xs = xs.transpose(2, 1)
if isinstance(self.norm, nn.LayerNorm):
xs = self.activation(self.norm(xs)) # `[B, T, C]`
else:
# time-independent normalization
xs = xs.contiguous().view(bs * xmax, -1, 1)
xs = self.activation(self.norm(xs)) # `[B * T, C, 1]`
xs = xs.view(bs, xmax, -1)
xs = xs.transpose(2, 1)
xs = self.pointwise_conv2(xs) # `[B, C, T]`
xs = xs.transpose(2, 1).contiguous() # `[B, T, C]`
return xs
def forward(self, x, pad_mask=None):
x = F.glu(self.input_linear(x))
T, B, C = x.size()
K, H = self.kernel_size, self.num_heads
weight = self.weight_linear(x).view(T, B, H, K)
if self.weight_softmax:
weight = F.softmax(weight, dim=-1)
weight = F.dropout(weight,
p=self.weight_dropout,
training=self.training)
# [seq_len x batch_size x heads x kernel_size] -> [batch_size x heads x kernel_size x seq_len]
weight = weight.permute(1, 2, 3, 0).contiguous()
if pad_mask is not None:
x = x.masked_fill(pad_mask, 0)
x = x.permute(1, 2, 0).contiguous()
x = dynamic_convolution(x, weight, self.padding_l).permute(2, 0, 1)
if self.conv_bias is not None:
x = x + self.conv_bias.view(1, 1, -1)
x = self.output_linear(x)
return x
def forward(self, input_tokens, encoder_out):
# split and transpose encoder outputs
encoder_a, encoder_b = self._split_encoder_out(encoder_out)
# embed positions
positions = self.embed_positions(input_tokens)
if self._is_incremental_eval:
# keep only the last token for incremental forward pass
input_tokens = input_tokens[:, -1:]
# embed tokens and positions
x = self.embed_tokens(input_tokens) + positions
x = F.dropout(x, p=self.dropout, training=self.training)
target_embedding = x
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = self._transpose_unless_incremental_eval(x)
# temporal convolutions
avg_attn_scores = None
num_attn_layers = len(self.attention)
for proj, conv, attention in zip(self.projections, self.convolutions,
self.attention):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = conv.remove_future_timesteps(x)
x = F.glu(x, dim=2)
# attention
if attention is not None:
x = self._transpose_unless_incremental_eval(x)
x, attn_scores = attention(x, target_embedding,
(encoder_a, encoder_b))
attn_scores = attn_scores / num_attn_layers
if avg_attn_scores is None:
avg_attn_scores = attn_scores
else:
avg_attn_scores.add_(attn_scores)
x = self._transpose_unless_incremental_eval(x)
# residual
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = self._transpose_unless_incremental_eval(x)
# project back to size of vocabulary
x = self.fc2(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = self.fc3(x)
return x, avg_attn_scores
def forward(self, x, pad_mask=None):
"""
:param pad_mask: [seq_len x bsz] indicating which element is correct
(this should be the same with the attention mask (pad=1, unpad=0)
:param x: [seq_len x bsz x hidden_size]
:return:
"""
x = x.transpose(0, 1).transpose(1, 2) # to [bsz x hidden_size x seq_len]
# pointwise conv does not need to mask because its elementwise projection
x = self.pointwise_conv1(x)
x = F.glu(x, dim=1)
if pad_mask is not None:
pad_mask = pad_mask.transpose(0, 1).transpose(1, 2)
# print(x.size(), pad_mask.size())
x = x.masked_fill_(pad_mask, 0)
x = self.depthwise_conv(x)
x = self.activation(x)
x = self.pointwise_conv2(x)
# x = F.conv1d(x, self.in_pointwise_weight, self.in_pointwise_bias, 1, 0, 1, 1)
# x = F.glu(x, dim=1)
#
# x = F.conv1d(x, self.depthwise_weight, self.depthwise_bias, 1, self.padding, 1, self.groups)
# x = self.activation(x)
#
# x = F.conv1d(x, self.out_pointwise_weight, self.out_pointwise_bias, 1, 0, 1, 1)
x = x.transpose(1, 2).transpose(0, 1) # back to [seq_len x bsz x hidden_size]
return x
def forward(self, xs):
"""Forward pass.
Args:
xs (FloatTensor): `[B, T, d_model]`
Returns:
xs (FloatTensor): `[B, T, d_model]`
"""
B, T, d_model = xs.size()
assert d_model == self.d_model
xs = xs.transpose(2, 1).contiguous() # `[B, C, T]`
xs = self.pointwise_conv1(xs) # `[B, 2 * C, T]`
xs = xs.transpose(2, 1) # `[B, T, 2 * C]`
xs = F.glu(xs) # `[B, T, C]`
xs = xs.transpose(2, 1).contiguous() # `[B, C, T]`
xs = self.depthwise_conv(xs) # `[B, C, T]`
xs = self.batch_norm(xs)
xs = self.activation(xs)
xs = self.pointwise_conv2(xs) # `[B, C, T]`
xs = xs.transpose(2, 1).contiguous() # `[B, T, C]`
return xs
def forward(self, x, mask=None, right_context=0):
"""
Args:
x: [batch_size, time, channels]
mask: [batch_size, time]
"""
if mask is not None:
mask = mask.unsqueeze(2).repeat([1, 1, x.size(-1)])
x = self.pointwise_conv1(x)
x = F.glu(x)
if mask is not None:
x.masked_fill_(~mask, 0.0)
if right_context == 0:
right_context = self.right_context
x = F.pad(x,
pad=(0, 0, self.kernel_size - right_context - 1,
right_context),
value=0.0).transpose(1, 2)
x = self.depthwise_conv(x)
x = self.batch_norm(x)
x = x * torch.sigmoid(x) # swish
x = x.transpose(1, 2)
x = self.pointwise_conv2(x)
if mask is not None:
x.masked_fill_(~mask, 0.0)
return x
def conv_cap(self, x, wordemb, imgsfeats):
for i, conv in enumerate(self.convs):
if (i == 0):
x = x.transpose(2, 1)
residual = self.resproj(x)
residual = residual.transpose(2, 1)
x = x.transpose(2, 1)
else:
residual = x
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = x[:, :, :-self.pad]
x = F.glu(x, dim=1)
if (self.is_attention and i % 2 == 0):
attn = self.attention[int(i / 2)]
x = x.transpose(2, 1)
x = attn(x, wordemb, imgsfeats)
x = F.relu(x.transpose(2, 1))
x = (x + residual) * math.sqrt(.5)
return x
def _forward(self, x, is_incremental):
"""Forward
Args:
x: (B, in_channels, T)
returns:
(B, out_channels, T)
"""
residual = x
x = F.dropout(x, p=self.dropout, training=self.training)
if is_incremental:
splitdim = -1
x = self.conv.incremental_forward(x)
else:
splitdim = 1
x = self.conv(x)
# remove future time steps
x = x[:, :, :residual.size(-1)] if self.causal else x
if self.glu:
x = F.glu(x, dim=splitdim)
return (x + residual) * math.sqrt(0.5)
else:
a, b = x.split(x.size(splitdim) // 2, dim=splitdim)
T = F.sigmoid(b)
return (T * a + (1 - T) * residual)
def forward(self, tokens, positions):
# embed tokens and positions
x = self.embed_tokens(tokens) + self.embed_positions(positions)
x = F.dropout(x, p=self.dropout, training=self.training)
input_embedding = x
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = x.transpose(0, 1)
# temporal convolutions
for proj, conv in zip(self.projections, self.convolutions):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = F.glu(x, dim=-1)
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = x.transpose(1, 0)
# project back to size of embedding
x = self.fc2(x)
# scale gradients (this only affects backward, not forward)
x = grad_multiply(x, 1.0 / (2.0 * self.num_attention_layers))
# add output to input embedding for attention
y = (x + input_embedding) * math.sqrt(0.5)
return x, y
def forward(self,
x,
futur_mask=None,
y=None): # [batch_size, seq_len, d_model]
x_pad = x
if self.only_see_past:
x_pad = F.pad(x, (0, 0, self.kernel_size - 1, 0, 0, 0))
futur_mask = (torch.triu(torch.ones(
x.size(1),
x.size(1) if y is None else y.size(1)),
diagonal=1) == 0).to(x.device)
x_pad = x_pad.permute(0, 2, 1)
conved = self.conv(x_pad) # [batch_size, 2 * hid_dim, seq_len]
conved = F.glu(conved, dim=1) # [batch_size, hid_dim, seq_len]
conved = conved.permute(0, 2, 1)
conved = conved + x # residual connection
if self.self_attn:
if y is not None:
self_attn = self.attn_norm(self.attn(conved, y, y))
else:
self_attn = self.attn_norm(
self.attn(conved, conved, conved, mask=futur_mask))
return self.feed_forward(conved + self_attn)
return conved
def forward(self, x):
batch_size = x.size()[0]
x = self.linear(x)
x = F.glu(x)
x = x.reshape(batch_size, 1024, 4, 4)
# 2x2 nearest neighbour upsampling
x = F.interpolate(x, scale_factor=(2, 2), mode="nearest")
x = F.glu(x, dim=1)
x = F.interpolate(x, scale_factor=(2, 2), mode="nearest")
x = self.conv2(x)
x = F.glu(x, dim=1)
x = F.interpolate(x, scale_factor=(2, 2), mode="nearest")
x = F.glu(x, dim=1)
x = self.last_conv(x)
x = self.activ_out(x)
return x
def forward(self, input):
batch_size = input.shape[0]
conv_input = self.emb2hid(embedded)
conv_input = conv_input.permute(
0, 2, 1) # conv_input = [batch size, hidden_size, 1]
conv_input = self.expand(
conv_input) # conv_input = [batch size, hidden_size, output_size]
batch_size = conv_input.shape[0]
hid_dim = conv_input.shape[1]
for i, conv in enumerate(self.convs):
conv_input = self.dropout(conv_input)
# zero padding
padding = torch.zeros(batch_size, hidden_size,
self.kernel_size - 1).fill_(0).to(device)
padded_conv_input = torch.cat(
(padding, conv_input), dim=2
) #padded_conv_input = [batch size, hidden_size, num_seq+2 + kernel size - 1]
# pass through convolutional layer
conved = conv(padded_conv_input
) #conved = [batch size, 2 * hidden_size, num_seq+2]
conved = F.glu(
conved, dim=1) #conved = [batch size, hidden_size, num_seq+2]
# apply residual connection
conved = (conved + conv_input) * self.scale
conv_input = conved
output = self.fc_out(self.dropout(conved.permute(
0, 2, 1))) #output = [batch size, self.output_size, self.exp_size]
return output.permute(0, 2, 1)
def forward(self, x):
"""
:param x: [seq_len x bsz x hidden_size]
:return:
"""
x = x.transpose(0, 1).transpose(1,
2) # to [bsz x hidden_size x seq_len]
x = self.pointwise_conv1(x)
x = F.glu(x, dim=1)
x = self.depthwise_conv(x)
x = self.activation(self.norm(x))
x = self.pointwise_conv2(x)
# x = F.conv1d(x, self.in_pointwise_weight, self.in_pointwise_bias, 1, 0, 1, 1)
# x = F.glu(x, dim=1)
#
# x = F.conv1d(x, self.depthwise_weight, self.depthwise_bias, 1, self.padding, 1, self.groups)
# x = self.activation(x)
#
# x = F.conv1d(x, self.out_pointwise_weight, self.out_pointwise_bias, 1, 0, 1, 1)
x = x.transpose(1, 2).transpose(
0, 1) # back to [seq_len x bsz x hidden_size]
return x
def forward(self, protein):
#protein = [batch size, protein len,protein_dim]
conv_input = self.fc(protein)
# conv_input=[batch size,protein len,hid dim]
#permute for convolutional layer
conv_input = conv_input.permute(0, 2, 1)
#conv_input = [batch size, hid dim, protein len]
for i, conv in enumerate(self.convs):
#pass through convolutional layer
conved = conv(self.dropout(conv_input))
#conved = [batch size, 2*hid dim, protein len]
#pass through GLU activation function
conved = F.glu(conved, dim=1)
#conved = [batch size, hid dim, protein len]
#apply residual connection / high way
conved = (conved + conv_input) * self.scale
#conved = [batch size, hid dim, protein len]
#set conv_input to conved for next loop iteration
conv_input = conved
conved = conved.permute(0, 2, 1)
# conved = [batch size,protein len,hid dim]
conved = self.ln(conved)
return conved
def forward(self, imgsfeats, imgsfc7, wordclass):
attn_buffer = None
wordemb = self.emb_0(wordclass)
# wordemb = self.emb_1(wordemb)
x = wordemb.transpose(2, 1) # (100L, 512L, 15L)
# print 'embedding:', x.size() # (100L, 512L, 15L)
batchsize, wordembdim, maxtokens = x.size()
y = F.relu(self.imgproj(imgsfc7))
y = y.unsqueeze(2).expand(batchsize, self.nfeats, maxtokens)
# print 'img:', y.size() # (100L, 512L, 15L)
x = torch.cat([x, y], 1) # (100L, 1024L, 15L)
# print 'concat emb and img:', x.size() # (100L, 1024L, 15L)
for i, conv in enumerate(self.convs):
if(i == 0):
# print x.size() # (100L, 1024L, 15L)
x = x.transpose(2, 1)
residual = self.resproj(x)
# print x.size() # (100L, 15L, 1024L)
# print residual.size() # (100L, 15L, 1024L)
residual = residual.transpose(2, 1)
# print residual.size() # (100L, 512L, 15L)
x = x.transpose(2, 1)
else:
residual = x
x = F.dropout(x, p=self.dropout, training=self.training)
# print 'layer:', i
# print x.size() # (100L, 1024L, 15L) in layer 0, (100L, 512L, 15L) in layer 1 and layer 2
x = conv(x)
# print x.size() # (100L, 1024L, 19L)
x = x[:,:,:-self.pad]
# print x.size() # (100L, 1024L, 15L)
# print 'before glu:', x.size() # (100L, 1024L, 15L)
x = F.glu(x, dim=1)
# print 'after glu:', x.size() # (100L, 512L, 15L)
if(self.is_attention):
attn = self.attention[i]
x = x.transpose(2, 1)
x, attn_buffer = attn(x, wordemb, imgsfeats)
x = x.transpose(2, 1)
x = (x+residual) # *math.sqrt(.5)
# print 'add res', x.size() # (100L, 512L, 15L)
x = x.transpose(2, 1)
# print 'out of conv', x.size() # (100L, 15L, 512L)
x = self.classifier(x)
# print 'classisify:', x.size() # (100L, 9221L, 15L)
x = x.transpose(2, 1)
# print 'return:', x.size() # (100L, 1024L, 15L)
return x, attn_buffer
def forward(self, input):
residual = input
output = self.residual_layer_1(input)
output = F.glu(output, dim=1)
output = self.residual_layer_2(output)
output += residual
return output
def forward(self, xs, xlens):
"""Forward computation.
Args:
xs (FloatTensor): `[B, T, input_dim (+Δ, ΔΔ)]`
xlens (list): A list of length `[B]`
Returns:
xs (FloatTensor): `[B, T', out_ch * feat_dim]`
xlens (list): A list of length `[B]`
"""
bs, time, input_dim = xs.size()
xs = xs.transpose(2, 1).unsqueeze(3) # `[B, in_ch (input_dim), T, 1]`
xs = self.layers(xs) # `[B, out_ch, T, 1]`
bs, out_ch, time, freq = xs.size()
xs = xs.transpose(2, 1).contiguous().view(
bs, time, -1) # `[B, T, out_ch * feat_dim]`
# weight normalization + GLU for the last fully-connected layer
xs = F.glu(self.fc_glu(xs), dim=2)
# Bridge layer
if self.bridge is not None:
xs = self.bridge(xs)
# NOTE: no subsampling is conducted
return xs, xlens
def forward(self, trg, encoder_conved, encoder_combined):
"""
Get output and attention
:param trg: trg = [batch size, trg len]
:param encoder_conved: encoder_conved = encoder_combined = [batch size, src len, emb dim]
:param encoder_combined:
:return:
"""
batch_size = trg.shape[0]
trg_len = trg.shape[1]
# create position tensor
pos = torch.arange(0, trg_len).unsqueeze(0).repeat(batch_size, 1).to(self.device)
# pos = [batch size, trg len]
# embed tokens and positions
tok_embedded = self.tok_embedding(trg)
pos_embedded = self.pos_embedding(pos)
# tok_embedded = [batch size, trg len, emb dim]
# pos_embedded = [batch size, trg len, emb dim]
# combine embeddings by elementwise summing
embedded = self.dropout(tok_embedded + pos_embedded)
# embedded = [batch size, trg len, emb dim]
# pass embedded through linear layer to go through emb dim -> hid dim
conv_input = self.emb2hid(embedded)
# conv_input = [batch size, trg len, hid dim]
# permute for convolutional layer
conv_input = conv_input.permute(0, 2, 1)
# conv_input = [batch size, hid dim, trg len]
batch_size = conv_input.shape[0]
hid_dim = conv_input.shape[1]
for i, conv in enumerate(self.convs):
# apply dropout
conv_input = self.dropout(conv_input)
# need to pad so decoder can't "cheat"
padding = torch.zeros(batch_size,
hid_dim,
self.kernel_size - 1).fill_(self.trg_pad_idx).to(self.device)
padded_conv_input = torch.cat((padding, conv_input), dim=2)
# padded_conv_input = [batch size, hid dim, trg len + kernel size - 1]
# pass through convolutional layer
conved = conv(padded_conv_input)
# conved = [batch size, 2 * hid dim, trg len]
# pass through GLU activation function
conved = F.glu(conved, dim=1)
# conved = [batch size, hid dim, trg len]
# calculate attention
attention, conved = self.calculate_attention(embedded,
conved,
encoder_conved,
encoder_combined)
# attention = [batch size, trg len, src len]
# apply residual connection
conved = (conved + conv_input) * self.scale
# conved = [batch size, hid dim, trg len]
# set conv_input to conved for next loop iteration
conv_input = conved
conved = self.hid2emb(conved.permute(0, 2, 1))
# conved = [batch size, trg len, emb dim]
output = self.fc_out(self.dropout(conved))
# output = [batch size, trg len, output dim]
return output, attention
def forward(self, protein):
#pos = torch.arange(0, protein.shape[1]).unsqueeze(0).repeat(protein.shape[0], 1).to(self.device)
#protein = protein + self.pos_embedding(pos)
#protein = [batch size, protein len,protein_dim]
conv_input = self.fc(protein)
# conv_input=[batch size,protein len,hid dim]
#permute for convolutional layer
conv_input = conv_input.permute(0, 2, 1)
#conv_input = [batch size, hid dim, protein len]
for i, conv in enumerate(self.convs):
#pass through convolutional layer
conved = conv(self.dropout(conv_input))
#conved = [batch size, 2*hid dim, protein len]
#pass through GLU activation function
conved = F.glu(conved, dim=1)
#conved = [batch size, hid dim, protein len]
#apply residual connection / high way
conved = (conved + conv_input) * self.scale
#conved = [batch size, hid dim, protein len]
#set conv_input to conved for next loop iteration
conv_input = conved
conved = conved.permute(0, 2, 1)
# conved = [batch size,protein len,hid dim]
return conved
def forward(self, xs):
"""Forward pass.
Args:
xs (FloatTensor): `[B, T, d_model]`
Returns:
xs (FloatTensor): `[B, T, d_model]`
"""
xs = xs.transpose(2, 1).contiguous() # `[B, C, T]`
if self.causal is not None:
xs = self.causal(xs)
xs = xs[:, :, :-(self.kernel_size - 1)]
xs = self.pointwise_conv1(xs) # `[B, 2 * C, T]`
xs = xs.transpose(2, 1) # `[B, T, 2 * C]`
xs = F.glu(xs) # `[B, T, C]`
xs = xs.transpose(2, 1).contiguous() # `[B, C, T]`
xs = self.depthwise_conv(xs) # `[B, C, T]`
xs = self.norm(xs)
xs = self.activation(xs)
xs = self.pointwise_conv2(xs) # `[B, C, T]`
xs = xs.transpose(2, 1).contiguous() # `[B, T, C]`
return xs
def forward(self, src):
"""
src: [B, L]
"""
B, L = src.shape
mask = (src != PAD_idx).long()
# padded pos_tokens
pos_tokens = mask.cumsum(dim=1) * mask
emb = self.embedding(src) # [B, L, emb_dim]
pos_emb = self.pos_embedding(pos_tokens) # [B, L, emb_dim]
emb = self.dropout(emb + pos_emb)
out = self.emb2hid(emb).permute(0, 2, 1) # [B, h_dim, L]
for conv in self.convs:
skip_con = out
out = out.masked_fill(mask.unsqueeze(1) == 0, 0.)
out = conv(self.dropout(out)) # [B, h_dim*2, L]
out = F.glu(out, dim=1) # [B, h_dim, L]
# residual connection
out = (out + skip_con) * self.scale # [B, h_dim, L]
out = self.hid2emb(out.permute(0, 2,
1)) # encoder out z. [B, L, emb_dim]
out = GradMultiply.apply(out, 1.0 / (2.0 * self.n_layers))
attn_value = (out + emb) * self.scale # attention value (z+e)
return out, attn_value, mask
def forward(self,x):
x1 = self.fc(x)
if self.add_batch_norm:
x1 = self.batch_norm(x1)
x = th.cat((x, x1), 1)
return F.glu(x,1)
def _forward(self, input_tokens, positions, encoder_out):
# split and transpose encoder outputs
encoder_a, encoder_b = self._split_encoder_out(encoder_out)
# embed tokens and positions
x = self.embed_tokens(input_tokens) + self.embed_positions(positions)
x = F.dropout(x, p=self.dropout, training=self.training)
target_embedding = x
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = self._transpose_unless_incremental_eval(x)
# temporal convolutions
avg_attn_scores = None
num_attn_layers = len(self.attention)
for proj, conv, attention in zip(self.projections, self.convolutions, self.attention):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = conv.remove_future_timesteps(x)
x = F.glu(x)
# attention
if attention is not None:
x = self._transpose_unless_incremental_eval(x)
x, attn_scores = attention(x, target_embedding, (encoder_a, encoder_b))
attn_scores = attn_scores / num_attn_layers
if avg_attn_scores is None:
avg_attn_scores = attn_scores
else:
avg_attn_scores.add_(attn_scores)
x = self._transpose_unless_incremental_eval(x)
# residual
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = self._transpose_unless_incremental_eval(x)
# project back to size of vocabulary
x = self.fc2(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = self.fc3(x)
return x, avg_attn_scores
def forward(self, src_tokens, src_lengths):
# embed tokens and positions
x = self.embed_tokens(src_tokens) + self.embed_positions(src_tokens)
x = F.dropout(x, p=self.dropout, training=self.training)
input_embedding = x.transpose(0, 1)
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = x.transpose(0, 1)
# temporal convolutions
for proj, conv, attention in zip(self.projections, self.convolutions, self.attention):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
padding_l = (conv.kernel_size[0] - 1) // 2
padding_r = conv.kernel_size[0] // 2
x = F.pad(x, (0, 0, 0, 0, padding_l, padding_r))
x = conv(x)
x = F.glu(x, dim=2)
if attention is not None:
x = attention(x)
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = x.transpose(1, 0)
# project back to size of embedding
x = self.fc2(x)
# scale gradients (this only affects backward, not forward)
x = GradMultiply.apply(x, 1.0 / (2.0 * self.num_attention_layers))
# add output to input embedding for attention
y = (x + input_embedding.transpose(0, 1)) * math.sqrt(0.5)
return {
'encoder_out': (x, y),
}
def forward(self, src_tokens):
positions = Variable(make_positions(src_tokens.data, self.dictionary.pad(),
left_pad=LanguagePairDataset.LEFT_PAD_SOURCE))
# embed tokens and positions
x = self.embed_tokens(src_tokens) + self.embed_positions(positions)
x = F.dropout(x, p=self.dropout, training=self.training)
input_embedding = x
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = x.transpose(0, 1)
# temporal convolutions
for proj, conv in zip(self.projections, self.convolutions):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = F.glu(x, dim=-1)
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = x.transpose(1, 0)
# project back to size of embedding
x = self.fc2(x)
# scale gradients (this only affects backward, not forward)
x = GradMultiply.apply(x, 1.0 / (2.0 * self.num_attention_layers))
# add output to input embedding for attention
y = (x + input_embedding) * math.sqrt(0.5)
return x, y
def forward(self, prev_output_tokens, encoder_out_dict):
encoder_out = encoder_out_dict['encoder']['encoder_out']
trained_encoder_out = encoder_out_dict['pretrained'] if self.pretrained else None
encoder_a, encoder_b = self._split_encoder_out(encoder_out)
# embed positions
positions = self.embed_positions(prev_output_tokens)
# embed tokens and positions
x = self.embed_tokens(prev_output_tokens) + positions
x = F.dropout(x, p=self.dropout, training=self.training)
target_embedding = x.transpose(0, 1)
# project to size of convolution
x = self.fc1(x)
# B x T x C -> T x B x C
x = x.transpose(0, 1)
# temporal convolutions
avg_attn_scores = None
for proj, conv, attention, selfattention, attproj in zip(
self.projections, self.convolutions, self.attention, self.selfattention, self.attproj
):
residual = x if proj is None else proj(x)
x = F.dropout(x, p=self.dropout, training=self.training)
x = conv(x)
x = F.glu(x, dim=2)
# attention
if attention is not None:
r = x
x, attn_scores = attention(attproj(x) + target_embedding, encoder_a, encoder_b)
x = x + r
if not self.training and self.need_attn:
if avg_attn_scores is None:
avg_attn_scores = attn_scores
else:
avg_attn_scores.add_(attn_scores)
if selfattention is not None:
x = selfattention(x)
x = (x + residual) * math.sqrt(0.5)
# T x B x C -> B x T x C
x = x.transpose(0, 1)
# project back to size of vocabulary
x = self.fc2(x)
x = F.dropout(x, p=self.dropout, training=self.training)
if not self.pretrained:
x = self.fc3(x)
# fusion gating
if self.pretrained:
trained_x, _ = self.pretrained_decoder.forward(prev_output_tokens, trained_encoder_out)
y = torch.cat([x, self.pretrained_outputs["out"]], dim=-1)
gate1 = self.gate1(y)
gate2 = self.gate2(y)
gated_x1 = gate1 * x
gated_x2 = gate2 * self.pretrained_outputs["out"]
fusion = torch.cat([gated_x1, gated_x2], dim=-1)
fusion = self.joining(fusion)
fusion_output = self.fc3(fusion)
return fusion_output, avg_attn_scores
else:
return x, avg_attn_scores