track = Track(
name= long_name,
url = os.path.join(URLBASE, GENOME, base_track),
tracktype = tracktype,
short_label=long_name,
long_label=long_name,
color = color,
local_fn = track,
remote_fn = os.path.join(upload_dir, GENOME, base_track)
)
aggregate.add_subtrack(track)
supertrack.add_track(aggregate)
#trackdb.add_tracks(aggregate)
bigBed_files = [track for track in remaining_files if track.endswith(".bb") or track.endswith(".bigBed")]
for bigBed_file in bigBed_files:
color = "0,100,0" if "pos" in bigBed_file else "100,0,0"
base_track = remove_special_chars(os.path.basename(bigBed_file))
long_name = args.sep.join(base_track.split(args.sep)[:args.num_sep]) + ".bb"
track = Track(
name=long_name,
url=os.path.join(URLBASE, GENOME, base_track),
tracktype="bigBed",
short_label=long_name,
long_label=long_name,
color=color,
local_fn=bigBed_file,
remote_fn=os.path.join(upload_dir, GENOME, base_track),
visibility="dense"
url=os.path.join(URLBASE, GENOME, base_track),
tracktype=tracktype,
short_label=long_name,
long_label=long_name,
color=color,
local_fn=track,
remote_fn=os.path.join(upload_dir, GENOME,
base_track))
aggregate.add_subtrack(track)
supertrack.add_track(aggregate)
#trackdb.add_tracks(aggregate)
bigBed_files = [
track for track in remaining_files
if track.endswith(".bb") or track.endswith(".bigBed")
]
for bigBed_file in bigBed_files:
color = "0,100,0" if "pos" in bigBed_file else "100,0,0"
base_track = remove_special_chars(os.path.basename(bigBed_file))
long_name = args.sep.join(base_track.split(
args.sep)[:args.num_sep]) + ".bb"
track = Track(name=long_name,
url=os.path.join(URLBASE, GENOME, base_track),
tracktype="bigBed",
short_label=long_name,
long_label=long_name,
color=color,
local_fn=bigBed_file,
remote_fn=os.path.join(upload_dir, GENOME, base_track),
print base_track
track = Track(
name= base_track,
url = os.path.join(URLBASE, GENOME, base_track),
tracktype = tracktype,
short_label=base_track,
long_label=base_track,
color = color,
local_fn = track,
remote_fn = os.path.join(upload_dir, GENOME, base_track)
)
aggregate.add_subtrack(track)
trackdb.add_tracks(aggregate)
bigBed_files = [track for track in remaining_files if track.endswith(".bb") or track.endswith(".bigBed")]
for bigBed_file in bigBed_files:
base_track = os.path.basename(bigBed_file)
track = Track(
name = base_track,
url = os.path.join(URLBASE, GENOME, base_track),
tracktype = "bigBed",
short_label = base_track,
long_label = base_track,
color = color,
local_fn = track,
remote_fn = os.path.join(upload_dir, GENOME, base_track)
)
result = hub.render()
hub.remote_fn = os.path.join(upload_dir, "hub.txt")
