def test_load_missing(self):
"""
"""
path = paths.project('does_not_exist.fake')
mm_end = mock.MagicMock(name='end')
system.end = mm_end
configs.load('trial', path)
mm_end.assert_called_once_with(1)
def test_load_invalid(self):
"""
"""
path = paths.project('tests', 'resources', 'invalid.json')
mm_end = mock.MagicMock(name='end')
system.end = mm_end
configs.load('trial', path)
mm_end.assert_called_once_with(1)
def run(
settings: typing.Union[str, dict],
**kwargs
) -> dict:
"""
Executes a grouped collection of simulation trials and returns the compiled
results for the individual trials, as well as results calculated for the
group of trials
:param settings:
Settings for running the group of trials. Each trial configuration
will inherit values from these settings.
:param kwargs:
Optional setting overrides to be included in the group configuration
"""
settings = configs.load('group', settings, **kwargs)
trials = []
system.log('[{}]: STARTING'.format(settings['id']))
for source in fetch_trial_list(settings):
if isinstance(source, str):
original = source
source = os.path.abspath(os.path.join(settings['path'], source))
if not os.path.exists(source):
source = '{}.json'.format(source)
if not os.path.exists(source):
system.log(
"""
[ERROR]: Unable to locate simulation trial file "{}"
""".format(original)
)
raise FileNotFoundError('No such file {}'.format(source))
trial_settings = configs.load('trial', source, inherits=settings)
simulate_trial.run(trial_settings)
trials.append(dict(
settings=trial_settings,
index=len(trials) + 1,
id=trial_settings['id'],
))
system.log('[{}]: ANALYZING'.format(settings['id']))
url = analyze.create(settings, trials)
system.log('[{}]: COMPLETE'.format(settings['id']))
return url
def execute_command():
"""
:return:
"""
parser = ArgumentParser()
parser.description = cli.reformat(DESCRIPTION)
parser.add_argument(
'generate_command',
type=str,
help='The generate command itself'
)
parser.add_argument(
'trial_or_group',
type=str,
help='Path to a trial or group file where the data source is specified'
)
parser.add_argument(
'output_filename',
type=str,
help='Name of the csv file to be created'
)
args = parser.parse_args()
cli_configs = system.load_configs()
path = get_path(args.trial_or_group, cli_configs)
if path is None:
system.log('ERROR: Invalid or missing trial/group path')
sys.exit(1)
settings = configs.load(None, path)
out_path = os.path.join(settings['directory'], args.output_filename)
simulate.load_trackway_positions(
settings,
save_as=out_path
)
def run(
settings: typing.Union[str, dict],
trackway_positions: trackway.TrackPosition = None,
**kwargs
) -> dict:
"""
Runs and analyzes a simulation of the trackway under the conditions
specified by the arguments and returns a dictionary of results for the
trial
:param settings:
Either a dictionary containing the configuration values for the trial
or an absolute path to a json format file that contains the
configuration values for the trial
:param trackway_positions:
A TrackwayDefinition instance populated with phase and position values
"""
settings = configs.load('trial', settings, **kwargs)
if 'steps_per_cycle' not in settings:
settings['steps_per_cycle'] = 20
if 'moving_ambiguity' not in settings:
# The coefficient of uncertainty while the foot is moving
settings['moving_ambiguity'] = 0.1
if 'duty_cycle' not in settings:
settings['duty_cycle'] = 0.6
system.log('[{}]: STARTING'.format(settings['id']))
activity_phases = load_activity_phases(settings)
trackway_positions = load_trackway_positions(settings, trackway_positions)
trackway_definition = trackway.TrackwayDefinition(
trackway_positions,
activity_phases
)
trackway_definition.reorient_positions()
foot_positions = limb.Property()
time_steps = list(generate.time_steps_from_data(
settings['steps_per_cycle'],
trackway_definition
))
for key in limb.KEYS:
out = compute.positions_over_time(
time_steps=time_steps,
limb_positions=trackway_definition.limb_positions.get(key),
activity_phase=trackway_definition.activity_phases.get(key),
settings=settings
)
foot_positions.set(key, out)
prune.invalid_positions(
settings,
time_steps,
foot_positions
)
if len(time_steps) < 1:
system.log(
"""
[{}]: INVALID RESULTS
There are no simulated results to analyze. Either the
simulation is not valid, or you have set a start and end time
that is not within the range of valid values. Please check your
settings file.
""".format(settings['id']))
raise ValueError('Invalid Results')
system.log('[{}]: ANALYZING'.format(settings['id']))
reorientation_needed = prune.unused_foot_prints(
trackway_definition.limb_positions,
foot_positions
)
if reorientation_needed:
# Reorient positions again now that the trackway has been pruned
trackway_definition.reorient_positions(
*foot_positions.left_pes,
*foot_positions.right_pes,
*foot_positions.left_manus,
*foot_positions.right_manus
)
url = analyze.create(
track_definition=trackway_definition,
settings=settings,
time_steps=time_steps,
foot_positions=foot_positions
)
system.log('[{}]: COMPLETED'.format(settings['id']))
return url
