def init(context, database, reset):
"""Setup the analysis package."""
db_uri = database or context.obj["database"]
log.info("setup a new database: %s", db_uri)
manager = api.connect(db_uri)
if reset:
manager.drop_all()
manager.create_all()
# add inital metadata record
new_metadata = Metadata()
manager.add_commit(new_metadata)
def root(context, config, database, log_level, log_file):
"""Interact with CLI."""
init_log(logging.getLogger(), loglevel=log_level, filename=log_file)
log.debug("{}: version {}".format(title, version))
# read in config file if it exists
if os.path.exists(config):
with codecs.open(config) as conf_handle:
context.obj = yaml.load(conf_handle)
else:
context.obj = {}
if database:
context.obj['database'] = database
if context.obj.get('database'):
context.obj['manager'] = api.connect(context.obj['database'])
