def setUp(self):
ret = unittest.TestCase.setUp(self)
exon1 = "TCONS_00001425 . gene 1439 1564 . - . ID=g.11422;Name=ORF%20g.11422%20m.11422%20type%3A5prime_partial%20len%3A42%20%28-%29"
exon2 = "TCONS_00001425 . gene 1043 1231 . + . ID=g.11419;Name=ORF%20g.11419%20m.11419%20type%3Acomplete%20len%3A63%20%28%2B%29"
exon3 = "TCONS_00001425 . gene 1 1062 . + . ID=g.11414;Name=ORF%20g.11414%20m.11414%20type%3A5prime_partial%20len%3A354%20%28%2B%29"
self.actual_exon = Exon(
"Spolyrrhiza9509S001 Cufflinks exon 26722 26764 . - . Parent=TCONS_00001425"
)
self.actual_trans = Transcript(exon1)
actual_exon1 = "Spolyrrhiza9509S001 Cufflinks exon 24497 24656 . - . Parent=TCONS_00001425"
actual_exon2 = "Spolyrrhiza9509S001 Cufflinks exon 24809 24938 . - . Parent=TCONS_00001425"
actual_exon3 = "Spolyrrhiza9509S001 Cufflinks exon 26237 26599 . - . Parent=TCONS_00001425"
self.actual_exon1 = Exon(actual_exon1)
self.actual_exon2 = Exon(actual_exon2)
self.actual_exon3 = Exon(actual_exon3)
self.exon1 = Transcript(exon1)
self.exon2 = Transcript(exon2)
self.exon3 = Transcript(exon3)
return ret
