def transactional_setup_fixture(self, region_mapping_index_factory):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
SimulatorController().index()
simulator = cherrypy.session[common.KEY_SIMULATOR_CONFIG]
region_mapping_index = region_mapping_index_factory()
simulator.connectivity = region_mapping_index.fk_connectivity_gid
simulator.surface = CortexViewModel()
simulator.surface.surface_gid = region_mapping_index.fk_surface_gid
simulator.surface.region_mapping_data = region_mapping_index.gid
def transactional_setup_fixture(self, connectivity_factory, surface_factory):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
SimulatorController().index()
stored_burst = cherrypy.session[common.KEY_BURST_CONFIG]
_, self.connectivity = connectivity_factory
_, self.surface = surface_factory
new_params = {}
for key, val in SIMULATOR_PARAMETERS.items():
new_params[key] = {'value': val}
new_params['connectivity'] = {'value': self.connectivity.gid}
new_params['surface'] = {'value': self.surface.gid}
stored_burst.simulator_configuration = new_params
def transactional_setup_method(self):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
BurstController().index()
stored_burst = cherrypy.session[common.KEY_BURST_CONFIG]
datatypes_factory = DatatypesFactory()
_, self.connectivity = datatypes_factory.create_connectivity()
_, self.surface = datatypes_factory.create_surface()
new_params = {}
for key, val in SIMULATOR_PARAMETERS.iteritems():
new_params[key] = {'value': val}
new_params['connectivity'] = {'value': self.connectivity.gid}
new_params['surface'] = {'value': self.surface.gid}
stored_burst.simulator_configuration = new_params
class TestSurfaceModelParametersController(BaseTransactionalControllerTest):
""" Unit tests for SurfaceModelParametersController """
def transactional_setup_method(self):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
BurstController().index()
stored_burst = cherrypy.session[common.KEY_BURST_CONFIG]
datatypes_factory = DatatypesFactory()
_, self.connectivity = datatypes_factory.create_connectivity()
_, self.surface = datatypes_factory.create_surface()
new_params = {}
for key, val in SIMULATOR_PARAMETERS.iteritems():
new_params[key] = {'value': val}
new_params['connectivity'] = {'value': self.connectivity.gid}
new_params['surface'] = {'value': self.surface.gid}
stored_burst.simulator_configuration = new_params
def transactional_teardown_method(self):
""" Cleans the testing environment """
self.cleanup()
def test_edit_model_parameters(self):
result_dict = self.surface_m_p_c.edit_model_parameters()
expected_keys = ['urlNormals', 'urlNormalsPick', 'urlTriangles', 'urlTrianglesPick',
'urlVertices', 'urlVerticesPick', 'mainContent', 'inputList',
'equationViewerUrl', 'equationsPrefixes', 'data', 'brainCenter',
'applied_equations']
# map(lambda x: self.assertTrue(x in result_dict), expected_keys)
assert all(x in result_dict for x in expected_keys)
assert result_dict['equationViewerUrl'] == '/spatial/modelparameters/surface/get_equation_chart'
assert result_dict['mainContent'] == 'spatial/model_param_surface_main'
class TestSurfaceModelParametersController(BaseTransactionalControllerTest):
""" Unit tests for SurfaceModelParametersController """
def transactional_setup_method(self):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
BurstController().index()
stored_burst = cherrypy.session[common.KEY_BURST_CONFIG]
datatypes_factory = DatatypesFactory()
_, self.connectivity = datatypes_factory.create_connectivity()
_, self.surface = datatypes_factory.create_surface()
new_params = {}
for key, val in SIMULATOR_PARAMETERS.iteritems():
new_params[key] = {'value': val}
new_params['connectivity'] = {'value': self.connectivity.gid}
new_params['surface'] = {'value': self.surface.gid}
stored_burst.simulator_configuration = new_params
def transactional_teardown_method(self):
""" Cleans the testing environment """
self.cleanup()
def test_edit_model_parameters(self):
result_dict = self.surface_m_p_c.edit_model_parameters()
expected_keys = [
'urlNormals', 'urlNormalsPick', 'urlTriangles', 'urlTrianglesPick',
'urlVertices', 'urlVerticesPick', 'mainContent', 'inputList',
'equationViewerUrl', 'equationsPrefixes', 'data', 'brainCenter',
'applied_equations'
]
# map(lambda x: self.assertTrue(x in result_dict), expected_keys)
assert all(x in result_dict for x in expected_keys)
assert result_dict[
'equationViewerUrl'] == '/spatial/modelparameters/surface/get_equation_chart'
assert result_dict['mainContent'] == 'spatial/model_param_surface_main'
class TestSurfaceModelParametersController(BaseTransactionalControllerTest):
""" Unit tests for SurfaceModelParametersController """
@pytest.fixture()
def transactional_setup_fixture(self, region_mapping_index_factory):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
SimulatorController().index()
simulator = cherrypy.session[common.KEY_SIMULATOR_CONFIG]
region_mapping_index = region_mapping_index_factory()
simulator.connectivity = region_mapping_index.fk_connectivity_gid
simulator.surface = CortexViewModel()
simulator.surface.surface_gid = region_mapping_index.fk_surface_gid
simulator.surface.region_mapping_data = region_mapping_index.gid
def transactional_teardown_method(self):
""" Cleans the testing environment """
self.clean_database()
self.cleanup()
def test_edit_model_parameters(self, transactional_setup_fixture):
result_dict = self.surface_m_p_c.edit_model_parameters()
expected_keys = ['urlNormals', 'urlNormalsPick', 'urlTriangles', 'urlTrianglesPick',
'urlVertices', 'urlVerticesPick', 'mainContent', 'parametersEquationPlotForm',
'baseUrl', 'equationsPrefixes', 'brainCenter', 'applied_equations']
# map(lambda x: self.assertTrue(x in result_dict), expected_keys)
assert all(x in result_dict for x in expected_keys)
assert result_dict['baseUrl'] == '/spatial/modelparameters/surface'
assert result_dict['mainContent'] == 'spatial/model_param_surface_main'
def test_edit_model_parameters(self, region_mapping_index_factory):
self.init()
surface_m_p_c = SurfaceModelParametersController()
simulator_controller = SimulatorController()
simulator_controller.index()
simulator = simulator_controller.context.simulator
region_mapping_index = region_mapping_index_factory()
simulator.connectivity = region_mapping_index.fk_connectivity_gid
simulator.surface = CortexViewModel()
simulator.surface.surface_gid = region_mapping_index.fk_surface_gid
simulator.surface.region_mapping_data = region_mapping_index.gid
result_dict = surface_m_p_c.edit_model_parameters()
expected_keys = ['urlNormals', 'urlNormalsPick', 'urlTriangles', 'urlTrianglesPick',
'urlVertices', 'urlVerticesPick', 'mainContent', 'parametersEquationPlotForm',
'baseUrl', 'equationsPrefixes', 'brainCenter', 'applied_equations']
# map(lambda x: self.assertTrue(x in result_dict), expected_keys)
assert all(x in result_dict for x in expected_keys)
assert result_dict['baseUrl'] == '/spatial/modelparameters/surface'
assert result_dict['mainContent'] == 'spatial/model_param_surface_main'
def transactional_setup_method(self):
self.init()
self.surface_m_p_c = SurfaceModelParametersController()
BurstController().index()
stored_burst = cherrypy.session[common.KEY_BURST_CONFIG]
datatypes_factory = DatatypesFactory()
_, self.connectivity = datatypes_factory.create_connectivity()
_, self.surface = datatypes_factory.create_surface()
new_params = {}
for key, val in SIMULATOR_PARAMETERS.iteritems():
new_params[key] = {'value': val}
new_params['connectivity'] = {'value': self.connectivity.gid}
new_params['surface'] = {'value': self.surface.gid}
stored_burst.simulator_configuration = new_params
def init_cherrypy(arguments=None):
#### Mount static folders from modules marked for introspection
arguments = arguments or []
CONFIGUER = TvbProfile.current.web.CHERRYPY_CONFIGURATION
for module in arguments:
module_inst = importlib.import_module(str(module))
module_path = os.path.dirname(os.path.abspath(module_inst.__file__))
CONFIGUER["/static_" + str(module)] = {'tools.staticdir.on': True,
'tools.staticdir.dir': '.',
'tools.staticdir.root': module_path}
#### Mount controllers, and specify the root URL for them.
cherrypy.tree.mount(BaseController(), "/", config=CONFIGUER)
cherrypy.tree.mount(UserController(), "/user/", config=CONFIGUER)
cherrypy.tree.mount(ProjectController(), "/project/", config=CONFIGUER)
cherrypy.tree.mount(FigureController(), "/project/figure/", config=CONFIGUER)
cherrypy.tree.mount(FlowController(), "/flow/", config=CONFIGUER)
cherrypy.tree.mount(SettingsController(), "/settings/", config=CONFIGUER)
cherrypy.tree.mount(HelpController(), "/help/", config=CONFIGUER)
cherrypy.tree.mount(SimulatorController(), "/burst/", config=CONFIGUER)
cherrypy.tree.mount(ParameterExplorationController(), "/burst/explore/", config=CONFIGUER)
cherrypy.tree.mount(DynamicModelController(), "/burst/dynamic/", config=CONFIGUER)
cherrypy.tree.mount(SpatioTemporalController(), "/spatial/", config=CONFIGUER)
cherrypy.tree.mount(RegionsModelParametersController(), "/burst/modelparameters/regions/", config=CONFIGUER)
cherrypy.tree.mount(SurfaceModelParametersController(), "/spatial/modelparameters/surface/", config=CONFIGUER)
cherrypy.tree.mount(RegionStimulusController(), "/spatial/stimulus/region/", config=CONFIGUER)
cherrypy.tree.mount(SurfaceStimulusController(), "/spatial/stimulus/surface/", config=CONFIGUER)
cherrypy.tree.mount(LocalConnectivityController(), "/spatial/localconnectivity/", config=CONFIGUER)
cherrypy.tree.mount(NoiseConfigurationController(), "/burst/noise/", config=CONFIGUER)
cherrypy.tree.mount(HPCController(), "/hpc/", config=CONFIGUER)
cherrypy.config.update(CONFIGUER)
# ----------------- Register additional request handlers -----------------
# This tool checks for MAX upload size
cherrypy.tools.upload = Tool('on_start_resource', RequestHandler.check_upload_size)
# This tools clean up files on disk (mainly after export)
cherrypy.tools.cleanup = Tool('on_end_request', RequestHandler.clean_files_on_disk)
# ----------------- End register additional request handlers ----------------
# Register housekeeping job
if TvbProfile.current.hpc.IS_HPC_RUN and TvbProfile.current.hpc.CAN_RUN_HPC:
cherrypy.engine.housekeeper = cherrypy.process.plugins.BackgroundTask(
TvbProfile.current.hpc.BACKGROUND_JOB_INTERVAL, HPCOperationService.check_operations_job)
cherrypy.engine.housekeeper.start()
# HTTP Server is fired now ######
cherrypy.engine.start()
