def parse_tests_hentz(kind,tests_sheet,question_set,subject_label=None):
"""Parse a worksheet of tests to return subject and tests."""
subjects = {}
tests = []
headers = tests_sheet.row_values(0)
hd = {key:i for i,key in enumerate(headers)}
for row_num in range(1,tests_sheet.nrows):
row = tests_sheet.row_values(row_num)
case_id = row[hd['shri_case_num']]
if case_id not in subjects:
subject = Subject(case_id)
# Age is reported as an integer or as 100+.
expired_age = row[hd['deathage']]
subject.expired_age = 100 if expired_age=='100+' else int(expired_age)
# Gender is reported as 1 or 2.
subject.gender = row[hd['female']]
if subject_label is not None:
subject.label = subject_label
subject.dementia = 2 in row[16:25]
subject.stint = float(row[hd['stint']])
subject.other = [int(_)>0 for _ in row[5:17]+row[19:25]]
subject.label = 'ctrl' if int(row[hd['controlp']]) else 'other'
subjects[case_id] = subject
responses = {}
for q in range(1,41):
choice_num = row[hd['smell_%d' % q]]
if type(choice_num) is float:
choice_num = int(choice_num)-1 # Change to 0-indexed.
else:
choice_num = None
responses[q] = Response(question_set.questions[q],choice_num)
response_set = ResponseSet(responses,indices=responses.keys())
test = Test(subjects[case_id],response_set,None)
tests.append(test)
return subjects,tests
def parse_tests_dugger(kind,tests_sheet,question_set,subject_label=None):
"""Parse a worksheet of tests to return subject and tests."""
subjects = {}
tests = []
headers = tests_sheet.row_values(0)
hd = {key:i for i,key in enumerate(headers)}
for row_num in range(1,tests_sheet.nrows):
row = tests_sheet.row_values(row_num)
case_id = row[hd['CaseID']]
if case_id not in subjects:
subject = Subject(case_id)
# Age is reported as an integer or as 100+.
expired_age = row[hd['expired_age']]
subject.expired_age = 100 if expired_age=='100+' else int(expired_age)
# Gender is reported as 1 or 2.
subject.gender = row[hd['tbl_donors.gender']]-1
if subject_label is not None:
subject.label = subject_label
subject.demented = row[hd['dementia_nos']] in [1,'yes']
subjects[case_id] = subject
test_date = row[hd['smell_test_date']]
test_date = datetime(1900,1,1) + timedelta(int(test_date)-2)
responses = {}
for q in range(1,41):
choice_num = row[hd['smell_%d' % q]]
if type(choice_num) is float:
choice_num = int(choice_num)-1 # Change to 0-indexed.
else:
choice_num = None
responses[q] = Response(question_set.questions[q],choice_num)
response_set = ResponseSet(responses,indices=responses.keys())
test = Test(subjects[case_id],response_set,test_date)
tests.append(test)
return subjects,tests
