def serialize(self, chromosome):
s = container.get_serializer()
return {
'id': chromosome['id'],
'name': chromosome['name'],
'synonyms': chromosome['synonyms'],
'position': chromosome['position'],
}
def serialize(self, exon):
s = container.get_serializer()
return {
'id': exon['id'],
'name': exon['name'],
'synonyms': exon['synonyms'],
'position': exon['position'],
'is_somatic': exon['is_somatic'],
}
def serialize(self, treatment):
s = container.get_serializer()
return {
'id': treatment['id'],
'name': treatment['name'],
'synonyms': treatment['synonyms'],
'position': treatment['position'],
'is_somatic': treatment['is_somatic'],
}
def serialize(self, gene):
s = container.get_serializer()
return {
'id': gene['id'],
'name': gene['name'],
'description': gene['description'],
'position': gene['position'],
'is_reversed': gene['is_reversed'],
'biotype': gene['biotype'],
'havana_gene': gene['havana_gene']
}
def serialize(self, variation):
s = container.get_serializer()
return {
'id': variation['id'],
'name': variation['name'],
'synonym': variation['synonym'],
'minor_allele_frequency': variation['position'],
'evidence_attributes': variation['evidence_attributes'],
'ancestral_allele': variation['ancestral_allele'],
'minor_allele_count': variation['minor_allele_count'],
'clinic_significance': variation['clinic_significance'],
'minor_allele': variation['minor_allele'],
'effects': variation['effects'],
}
