Python msg_too_expensive_dim Examples

Example #1

File: cov2kronSum.py Project: jeffhsu3/limix

    def K(self):
        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(msg_too_expensive_dim(my_name(),
                                                                   _MAX_DIM))

        rv = sp.kron(self.Cg.K(), self.R) + sp.kron(self.Cn.K(), sp.eye(self.dim_r))
        return rv

Example #2

File: cov2kronSum.py Project: BioinformaticsArchive/limix

    def K(self):
        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(msg_too_expensive_dim(my_name(),
                                                                   _MAX_DIM))

        rv = sp.kron(self.Cg.K(), self.R) + sp.kron(self.Cn.K(), sp.eye(self.dim_r))
        return rv

Example #3

    def K_grad_i(self, i):
        nCg = self.Cg.getNumberParams()

        if i >= self.getNumberParams():
            raise ValueError("Trying to retrieve the gradient over a "
                             "parameter that is inactive.")

        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(
                msg_too_expensive_dim(my_name(), _MAX_DIM))

        i = self._actindex2index(i)

        if i < nCg:
            rv = sp.kron(self.Cg.K_grad_i(i), self.R)
        else:
            _i = i - nCg
            rv = sp.kron(self.Cn.K_grad_i(_i), sp.eye(self.dim_r))
        return rv

Example #4

File: cov2kronSum.py Project: jeffhsu3/limix

    def K_grad_i(self,i):
        nCg = self.Cg.getNumberParams()

        if i >= self.getNumberParams():
            raise ValueError("Trying to retrieve the gradient over a "
                             "parameter that is inactive.")

        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(msg_too_expensive_dim(my_name(),
                                                                   _MAX_DIM))

        i = self._actindex2index(i)

        if i < nCg:
            rv= sp.kron(self.Cg.K_grad_i(i), self.R)
        else:
            _i = i - nCg
            rv = sp.kron(self.Cn.K_grad_i(_i), sp.eye(self.dim_r))
        return rv

Example #5

    def L(self):
        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(
                msg_too_expensive_dim(my_name(), _MAX_DIM))

        return sp.kron(self.Lc(), self.Lr())

Example #6

File: cov3kronSumLR.py Project: BioinformaticsArchive/limix

    def GG(self):
        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(msg_too_expensive_dim(my_name(),
                                                                   _MAX_DIM))

        return sp.dot(self.G, self.G.T)

Example #7

File: cov2kronSum.py Project: jeffhsu3/limix

    def L(self):
        if self.dim > _MAX_DIM:
            raise TooExpensiveOperationError(msg_too_expensive_dim(my_name(),
                                                                   _MAX_DIM))

        return sp.kron(self.Lc(), self.Lr())