# 1.a
# Read a CellML file into a std.string.
with open(model_file) as f:
content = f.read()
# 1.b
# Create a Parser item.
parser = Parser()
# 1.c
# Use the parser to deserialise the contents of the string you've read and return the model.
model = parser.parseModel(content)
# 1.d
# Print the parsed model to the terminal for viewing.
print_model(model, False)
# end 1
print('----------------------------------------------------------')
print(' STEP 2: Resolve the imports and flatten ')
print('----------------------------------------------------------')
import_path = os.path.dirname(model_file)
# 2.a
# Create an Importer instance and use it to resolve the imports in your model.
importer = Importer()
importer.resolveImports(model, import_path)
# 2.b
# Check that the importer has not raised any issues.
# 1.a
# Read a CellML file into a string.
read_file = open("sodiumChannelModel_broken.cellml")
# 1.b
# Create a Parser item.
parser = Parser()
# 1.c
# Use the parser to deserialise the contents of the string you've read and return the model.
model = parser.parseModel(read_file.read())
# 1.d
# Print the parsed model to the terminal for viewing.
print_model(model, False)
# end 1
print('----------------------------------------------------------')
print(' STEP 2: Validate the parsed model ')
print('----------------------------------------------------------')
# 2.a
# Create a Validator item and validate the model.
validator = Validator()
validator.validateModel(model)
# end 2.a
# Each Validator issue contains:
# 1.a
# Read the contents of the tutorial2.cellml file into a string.
print(f"Opening the CellML file: \"{os.path.basename(model_file)}\"")
with open(model_file) as f:
content = f.read()
# 1.b
# Create a Parser instance, and submit your string for serialisation
# into a new model.
parser = Parser()
model = parser.parseModel(content)
# 1.c
# Use the print_model utility function to display the contents of the
# parsed model in the terminal.
print_model(model, True)
# end 1
print('----------------------------')
print(' STEP 2: Validate the model')
print('----------------------------')
# 2.a
# Create a Validator and pass the model into it.
validator = Validator()
validator.validateModel(model)
# 2.b
# Check the number of issues returned from the validator.
num_validation_issues = validator.issueCount()
print("-------------------------------------------------------------")
# 1.a
# Create a Model and name it.
model = Model()
model.setName("tutorial3_model")
# 1.b
# Create a component to use as an integrator, set its attributes and
# add it to the model.
component = Component()
component.setName("component")
model.addComponent(component)
# Checking that it worked
print_model(model)
# 1.c
# Create the MathML2 string representing the governing equations.
equation1 = \
" <apply><eq/>"\
" <ci>c</ci>"\
" <apply><plus/>"\
" <ci>a</ci>"\
" <cn>2.0</cn>"\
" </apply>"\
" </apply>"
# 1.d
equation2 = \
" <apply><eq/>"\