def write_cleaned_labels(self, labels, options):
def _create_dir(dir_name):
if not os.path.isdir(dir_name):
os.makedirs(dir_name)
if len(labels) == 0:
self.logger.info(
'No labels to write. Maybe the filtering parameters are too strict. Aborting.'
)
return
# write full file
folder_path = find_folder('4_labels_cleaned')
option_flags = '_'.join(options)
f_path = os.path.join(folder_path,
'cleaned_labels_{}.csv'.format(option_flags))
labels[[
'id', 'text', 'question_id', 'question_tag', 'label_id',
'label_tag'
]].to_csv(f_path, index=False)
self.logger.info('Successfully wrote {:,} labels to file {}'.format(
len(labels), f_path))
# write 1 file per question
folder_path_by_question = os.path.join(folder_path, 'by_question')
labels.rename(columns={'label_tag': 'label'}, inplace=True)
self.logger.info('Writing one files by question...')
for question_tag, g in labels.groupby('question_tag'):
f_path = os.path.join(
folder_path_by_question, question_tag,
'cleaned_labels_{}_{}.csv'.format(option_flags, question_tag))
_create_dir(os.path.dirname(f_path))
g[['id', 'text', 'label']].to_csv(f_path, index=False)
self.logger.info(
'... successfully wrote {:,} labels for question {} to file {}'
.format(len(g), question_tag, f_path))
def cleaned_annotation_data(self):
self.make_title('Cleaned annotation data')
f_name = os.path.join(find_folder('4_labels_cleaned'),
'cleaned_labels.csv')
num_annotations = 0
if os.path.isfile(f_name):
num_annotations = sum(1 for line in open(f_name))
self.add_key_value('Number of cleaned annotations', num_annotations)
self.text += '\n'
def annotation_data(self):
self.make_title('Annotation data')
self.text += 'Number of annotation results:\n'
for mode in ['public', 'local', 'mturk', 'other']:
f_names = glob.glob(
os.path.join(find_folder('3_labelled'), mode, '*.csv'))
num_annotations = 0
for f_name in f_names:
num_annotations += sum(1 for line in open(f_name))
self.add_key_value('- {}'.format(mode), num_annotations)
self.text += '\n'
def sampled_data(self):
self.make_title('Sampled data')
f_names = glob.glob(
os.path.join(find_folder('2_sampled'),
'sampled_{}_{}_*.csv'.format('*', '*')))
num_sample_files = len(f_names)
num_tweets_sampled = 0
for f_name in f_names:
num_tweets_sampled += sum(1 for line in open(f_name))
self.add_key_value(
'Number of tweets sampled ({:,} file(s))'.format(num_sample_files),
num_tweets_sampled)
self.text += '\n'
def parsed_data(self):
num_lines = 0
for dtype in ['original', 'anonymized', 'encrypted']:
path = os.path.join(find_folder('1_parsed'),
'parsed_{}.csv'.format(dtype))
if os.path.isfile(path):
num_lines = sum(1 for line in open(path))
break
self.make_title('Parsed data')
if num_lines > 0:
self.add_key_value('Num tweets in parsed data', num_lines - 1)
else:
self.text += 'No parsed data present.\n'
self.text += '\n'
def raw_data(self):
raw_data_folder = find_folder('0_raw')
num_historic = len(
glob.glob(os.path.join(raw_data_folder, 'historic', '*.json*')))
num_streaming = len(
glob.glob(
os.path.join(raw_data_folder, 'streaming', '**', '*.json*')))
total = num_historic + num_streaming
self.make_title('Raw data')
if total > 0:
self.add_key_value('Number of files in raw data', total)
self.add_key_value('- historic', num_historic)
self.add_key_value('- streaming', num_streaming)
else:
self.text += 'No raw data present.\n'
self.text += '\n'
def translate(self):
parser = ArgParseDefault(description='Translate prepared text')
logger = logging.getLogger(__name__)
parser.add_argument('-s', '--source', dest='source', choices=["EN", "DE", "FR", "ES", "PT", "IT", "NL", "PL", "RU"], required=True, help='Source language')
parser.add_argument('-t', '--target', dest='target', choices=["EN", "DE", "FR", "ES", "PT", "IT", "NL", "PL", "RU"], required=True, help='Target language')
parser.add_argument('--auth-key', dest='auth_key', type=str, required=True, help='DeepL auth key')
args = parser.parse_args(sys.argv[2:])
logger.info('Translating from source language {} to target language {}....'.format(args.source, args.target))
# load data
folder = os.path.join(find_folder('other'), 'translations')
if not os.path.isdir(folder):
os.makedirs(folder)
f_paths = glob.glob(os.path.join(folder, 'prepare_*.csv'))
if len(f_paths) == 0:
raise FileNotFoundError('No prepare_*.csv file(s) found in folder {}'.format(folder))
elif len(f_paths) > 1:
raise ValueError('Found {} prepare_*.csv files in folder {}.'.format(len(f_paths), folder))
logger.info('Loading prepared data...')
df = pd.read_csv(f_paths[0], dtype={'id': str})
df_len = df.text.apply(len)
costs = df_len.sum()/500 * 0.01
logger.info('About to translate {:,} characters with an estimated cost of EUR {:.2f}.'.format(df_len.sum(), costs))
yes_no = input('Continue to translate? (yes/no)\n')
if not (yes_no == 'y' or yes_no == 'yes'):
logger.info('Aborting...')
return
# params
base_url = 'https://api.deepl.com/v2/translate'
other_params = {'auth_key': args.auth_key, 'target_lang': args.target, 'source_lang': args.source}
chunk_size = 20
def chunks(total_len, n):
for i in range(0, total_len, n):
yield i, i + n - 1
df['translation'] = ''
for start, stop in tqdm(chunks(len(df), chunk_size), total=len(range(0, len(df), chunk_size))):
texts = df.loc[start:stop, 'text'].tolist()
res = requests.get(base_url, params={'text': texts, **other_params})
if not res.ok:
raise Exception('Unable to retrieve data from DeepL. Error status code {}... Aborting'.format(res.status_code))
res = res.json()
df_tr = pd.DataFrame(res['translations'])
df.loc[start:stop, 'translation'] = df_tr['text'].values
f_path = os.path.join(folder, 'translation_{}.csv'.format(get_df_hash(df)[:5]))
print('Writing {:,} records to file {}...'.format(len(df), f_path))
df.to_csv(f_path, index=False)
def annotation_cleaned(self):
self.header('Cleaned annotations')
f_path = os.path.join(find_folder('4_labels_cleaned'),
'cleaned_labels.csv')
try:
self.logger.info('Reading cleaned annotation data...')
df = pd.read_csv(f_path)
except FileNotFoundError:
self.text += 'No cleaned annotations present.'
return
self.add_key_value('- Num annotation results', len(df))
self.add_key_value('- Num tweets annotated', len(df.id.unique()))
self.text += '\n\n'
for question_tag, q_group in df.groupby('question_tag'):
self.make_title('Question {}'.format(question_tag))
total = q_group.count()['id']
for label_tag, q_a_group in q_group.groupby('label_tag'):
label_tag_count = q_a_group.count()['id']
self.add_key_value('- {}'.format(label_tag),
label_tag_count,
with_percent=100 * label_tag_count / total)
self.text += '\n\n'
def prepare(self):
parser = ArgParseDefault(description='Prepare text to be translated')
logger = logging.getLogger(__name__)
parser.add_argument('--geo-only', dest='geo_only', action='store_true', help='Only use geo-tagged data')
parser.add_argument('-d', '--dtype', dest='dtype', choices=['original', 'anonymized', 'encrypted'], default='anonymized', help='Data source type')
parser.add_argument('-l', '--limit', dest='limit', type=int, default=-1, help='If set, only extract random subsample')
args = parser.parse_args(sys.argv[2:])
# load data
logger.info('Loading data...')
df = get_parsed_data(dtype=args.dtype, usecols=['id', 'text', 'is_duplicate', 'has_place', 'has_coordinates', 'is_retweet'])
# filter
if args.geo_only:
df = df[(df.has_place | df.has_coordinates) & (~df.is_duplicate) & (~df.is_retweet)]
else:
df = df[(~df.is_duplicate) & (~df.is_retweet)]
if args.limit > 0:
df = df.sample(args.limit)
# write data
folder = os.path.join(find_folder('other'), 'translations')
if not os.path.isdir(folder):
os.makedirs(folder)
f_path = os.path.join(folder, 'prepare_{}.csv'.format(get_df_hash(df)[:5]))
logger.info('Writing {:,} records to file {}...'.format(len(df), f_path))
df[['id', 'text']].to_csv(f_path, index=False)
def write_sample(self,
sample,
mode,
columns=['id', 'text'],
size='',
min_date=None,
max_date=None,
flags=''):
if len(sample) == 0:
logger.warn('No sample files written. Aborting.')
return
timestamp = time.strftime('%Y-%m-%d_%H-%M-%S')
min_date_str = ''
if min_date is not None:
min_date_str = '_min_date_{}'.format(min_date)
max_date_str = ''
if max_date is not None:
max_date_str = '_max_date_{}'.format(max_date)
f_name = 'sampled_{mode}_{len_sample}_{size}_{seed}{min_date}{max_date}_created_{timestamp}{flags}.csv'.format(
mode=mode,
len_sample=len(sample),
size=size,
seed=self.seed,
timestamp=timestamp,
min_date=min_date_str,
max_date=max_date_str,
flags=flags)
full_path = os.path.join(find_folder('2_sampled'), f_name)
logger.info('Writing file {} ...'.format(full_path))
if 'all' in columns:
sample.to_csv(full_path, encoding='utf8')
else:
sample[columns].to_csv(full_path,
encoding='utf8',
index=False,
header=False)
def main(args):
"""
This script creates a new files in preprocess/data/other/pretrain with tweets which should be used for pretraining language models.
It excludes training data and duplicates.
"""
# load data
logger.info('Reading data...')
usecols = [
'id', 'text', 'lang', 'token_count', 'is_retweet', 'contains_keywords'
]
df = get_parsed_data(usecols=usecols, num_files=args.num_files)
logger.info(f'...loaded a total of {len(df):,} tweets')
# Filter retweets
if 'retweets' in args.filters:
logger.info(f'Filter retweets...')
num_before = len(df)
df = df[~df.is_retweet]
num_after = len(df)
logger.info(
f'... {num_after:,} remaining (removed {num_before-num_after:,})')
# Filtering by keyword
if 'contains_keywords' in args.filters:
logger.info(f'Filter contains_keywords...')
num_before = len(df)
df = df[df.contains_keywords]
num_after = len(df)
logger.info(
f'... {num_after:,} remaining (removed {num_before-num_after:,})')
# filter lang
if args.lang is not None:
logger.info(f'Filter lang {args.lang}...')
num_before = len(df)
df = df[df.lang == args.lang]
num_after = len(df)
logger.info(
f'... {num_after:,} remaining (removed {num_before-num_after:,})')
# filter min tokens
if args.min_tokens > 0:
logger.info(f'Filter has >={args.min_tokens} tokens...')
num_before = len(df)
df = df[df.token_count >= args.min_tokens]
num_after = len(df)
logger.info(
f'... {num_after:,} remaining (removed {num_before-num_after:,})')
# generate text column to filter for duplicates
logger.info('Remove duplicates...')
num_before = len(df)
df.loc[:, 'text_cleared'] = df.text.apply(generate_text_cleared)
df = df.drop_duplicates(subset=['text_cleared'])
num_after = len(df)
logger.info(
f'... {num_after:,} remaining (removed {num_before-num_after:,})')
# shuffle
logger.info('Shuffle...')
df = df.sample(frac=1)
# write output file
num_lines = len(df)
logger.info(f'Collected total of {num_lines:,} examples')
num_train = max(int(0.8 * num_lines), num_lines - int(2e5))
ts = datetime.datetime.now().strftime('%Y_%m_%d-%H-%M_%s')
for (_s, _e), _type in zip([(None, num_train), (num_train, None)],
['train', 'dev']):
_df = df[_s:_e]
logger.info(f'Writing {len(_df):,} examples for {_type} data...')
output_folder = os.path.join(find_folder('other'), 'pretrain',
f'run_{ts}', _type)
if not os.path.isdir(output_folder):
os.makedirs(output_folder)
if args.no_parallel:
num_cpus = 1
else:
num_cpus = max(multiprocessing.cpu_count() - 1, 1)
parallel = joblib.Parallel(n_jobs=num_cpus)
write_output_file_delayed = joblib.delayed(write_output_file)
res = parallel((write_output_file_delayed(
_df.iloc[i:(i + args.max_examples_per_file)],
os.path.join(output_folder, f'pretrain_{_type}_{j:03}.txt'))
for j, i in enumerate(
trange(0, len(_df), args.max_examples_per_file))))
logger.info(
f'Successfully wrote {len(res):,} file(s) to folder {output_folder}'
)
def train_dev_test_split(question='sentiment',
dev_size=0.1,
test_size=0.2,
seed=42,
name='',
balanced_labels=False,
all_questions=False,
label_tags=[],
labelled_as=None,
has_label=''):
"""Splits cleaned labelled data into training, dev and test set"""
def _filter_for_label_balance(df):
"""Performs undersampling for overrepresanted label classes"""
counts = Counter(df['label'])
min_count = min(counts.values())
_df = pd.DataFrame()
for l in counts.keys():
_df = pd.concat([_df, df[df['label'] == l].sample(min_count)])
return _df
questions = [question]
np.random.seed(seed)
if name == '':
f_path = os.path.join(find_folder('4_labels_cleaned'),
'cleaned_labels*.csv')
annotation_files = glob.glob(f_path)
if len(annotation_files) == 0:
raise FileNotFoundError(
f'No cleaned label files could be found with the pattern {f_path}'
)
elif len(annotation_files) > 1:
raise ValueError(
f'Found {len(annotation_files)} different files for cleaned labels. Provide "name" argument to specify which.'
)
name = os.path.basename(annotation_files[0]).split('.csv')[0]
if all_questions:
df = get_cleaned_labelled_data(name=name)
questions = df['question_tag'].unique()
for question in questions:
df = get_cleaned_labelled_data(question=question,
name=name,
has_label=has_label)
if len(df) == 0:
logger.warning(
'No labelled data could be found for question {} under these parameters.'
.format(question))
continue
if balanced_labels:
df = _filter_for_label_balance(df)
flags = '{}{}'.format('_' + name if name != '' else '',
'_balanced' if balanced_labels else '')
if len(label_tags) > 0:
df = df[df['label'].isin(label_tags)]
flags += '_labels_{}'.format('_'.join(label_tags))
if len(has_label) > 0:
has_label_flag = 'has_label_{}'.format(
has_label.replace('|', '_or_').replace(',', '_and_'))
flags += '_' + has_label_flag
folder_path = os.path.join(find_folder('4_labels_cleaned'),
'other', has_label_flag, question)
else:
folder_path = os.path.join(find_folder('4_labels_cleaned'),
'splits', question)
train, dev, test = np.split(df.sample(frac=1, random_state=seed), [
int((1 - dev_size - test_size) * len(df)),
int((1 - test_size) * len(df))
])
if not os.path.isdir(folder_path):
os.makedirs(folder_path)
for dtype, data in [['train', train], ['dev', dev], ['test', test]]:
f_name = f'{dtype}_{question}_split_{len(train)}_{len(dev)}_{len(test)}_seed_{seed}{flags}.csv'
f_path = os.path.join(folder_path, f_name)
data.to_csv(f_path, index=None, encoding='utf8')
logger.info(
f'Successfully wrote data of {len(data):,} examples to file {f_path}.'
)
def generate_batch(self,
num_tweets=None,
batch_id=None,
tail=True,
ignore_previous=False):
"""Generates a new batch which takes as input a large sample file provided in `data/2_sampled` and generates a new batch
not including previously annotated tweets.
"""
if num_tweets is None:
raise ValueError('Num tweets is zero. Cannot create empty batch.')
# vars
sample_folder = find_folder('2_sampled')
# Ids from sample file
df_samples = get_sampled_data()
if len(df_samples) == 0:
raise Exception(
'Sample file is empty. Generate a sample file first.')
tweet_ids_sampled = set(df_samples['tweet_id'])
# Ids from previously labelled data
try:
df_labels = get_labelled_data()
except FileNotFoundError:
tweet_ids_labelled = set()
else:
tweet_ids_labelled = set(df_labels['tweet_id'])
# Ids from previous batches
df_batched = get_batched_sample_data()
if len(df_batched) > 0:
tweet_ids_batched = set(df_batched['tweet_id'])
else:
tweet_ids_batched = set()
# Ids from previous batches which were not available
df_unavailable = get_uploaded_batched_data(availability='unavailable')
if len(df_unavailable) > 0:
tweet_ids_unavailable = set(df_unavailable['tweet_id'])
else:
tweet_ids_unavailable = set()
# remove tweets which are unavailable, have been previously labelled
still_available = tweet_ids_sampled - tweet_ids_unavailable - tweet_ids_labelled
if not ignore_previous:
still_available -= tweet_ids_batched
logger.info(
'Unique tweets in base sample(s): {:,} (labelled: {:,}, unavailable: {:,}, in previous batches: {:,})'
.format(len(tweet_ids_sampled), len(tweet_ids_labelled),
len(tweet_ids_unavailable), len(tweet_ids_batched)))
logger.info('Tweets left to sample from: {:,}'.format(
len(still_available)))
logger.info('Precentage labelled: {:.2f}%'.format(
100 * float(len(tweet_ids_labelled) / len(tweet_ids_sampled))))
# return conditions
if len(still_available) <= 0:
logger.warn('All available tweets have been labelled.'.format(
len(tweet_ids_sampled), len(still_available)))
return
if num_tweets > len(still_available):
logger.warn(
'Requested to create batch of {:,}, but only {:,} are still available.'
.format(num_tweets, len(still_available)))
return
if tail:
batch = df_samples.loc[df_samples['tweet_id'].isin(
still_available)][-num_tweets:]
else:
batch = df_samples.loc[df_samples['tweet_id'].isin(
still_available)][:num_tweets]
assert len(batch) == num_tweets
# write new batch file
if batch_id is None:
try:
batch_id = 1 + max([
int(s.split('_')[-1]) for s in os.listdir(sample_folder)
if s.startswith('batch_')
and os.path.isdir(os.path.join(sample_folder, s))
])
except ValueError:
batch_id = 1
batch_name = 'batch_{}'.format(batch_id)
logger.info('Generating batch {} of size {:,} tweets...'.format(
batch_name, num_tweets))
output_folder = os.path.join(sample_folder, batch_name)
if not os.path.isdir(output_folder):
os.mkdir(output_folder)
else:
raise Exception(
'Found pre-existing folder "{}". Please remove this folder first or pick a different batch ID.'
.format(output_folder))
f_path = os.path.join(
output_folder,
'{}_{}.csv'.format(batch_name,
datetime.now().strftime('%Y-%m-%d')))
batch.to_csv(f_path, header=None, index=False, encoding='utf8')
logger.info(
'Successfully wrote file containing new batch "{}"'.format(f_path))
