from utils.dict_tools import DotDict from utils.dict_tools import ArgumentError from utils.dict_tools import ParameterError from functools import wraps from utils.contexts import silence try: # Python 2 from ConfigParser import ConfigParser from inspect import getargspec as getfullargspec except ImportError: # Python 3 from configparser import ConfigParser from inspect import getfullargspec LOG = logtools.get_logger(__name__) ID_CONFIG = "entry_cfg" ID_DICT = "entry_dict" ID_JSON = "entry_json" ID_SECTION = "section" # EntryPoint Class ############################################################# class EntryPoint(object): def __init__(self, parameter, strict=False): """ Initialize decoration: Handle the desired input parameter. """ self.strict = strict
import numpy as np import pandas as pd import madx_wrapper from correction.fullresponse import response_twiss from model import manager from segment_by_segment.segment_by_segment import GetLlmMeasurement from twiss_optics.optics_class import TwissOptics from utils import logging_tools from utils import tfs_pandas as tfs, iotools from utils.dict_tools import DotDict from utils.entrypoint import entrypoint, EntryPointParameters from utils.logging_tools import log_pandas_settings_with_copy LOG = logging_tools.get_logger(__name__) DEV_NULL = os.devnull # Configuration ################################################################## DEFAULT_ARGS = { "optics_file": None, "output_path": None, "output_filename": "changeparameters_iter", "svd_cut": 0.01, "optics_params": ['MUX', 'MUY', 'BBX', 'BBY', 'NDX', 'Q'], "variables": ["MQM", "MQT", "MQTL", "MQY"], "beta_file_name": "getbeta", "method": "pinv",
""" import os import numpy as np import pandas as pd from math import factorial import matplotlib.pyplot as plt from utils.plotting import plot_style as pstyle from utils import logging_tools as logtool from utils import tfs_pandas as tfs from utils.contexts import timeit from utils.dict_tools import DotDict from twiss_optics.twiss_functions import get_phase_advances, tau, dphi from twiss_optics.twiss_functions import assertion, regex_in, get_all_rdts LOG = logtool.get_logger(__name__) PLOT_DEFAULTS = { "style": 'standard', "manual": { u'lines.linestyle': '-', u'lines.marker': '', } } ################################ # TwissOptics ################################ class TwissOptics(object):
""" Entrypoint Extract Online Model --------------------- Entrypoint for the online model extractor wrapper. """ from online_model import extractor_wrapper from utils import logging_tools, iotools from utils.entrypoint import entrypoint, EntryPointParameters, ArgumentError LOG = logging_tools.get_logger(__name__) FUNCTION_OVERVIEW = 'overview' FUNCTION_DEFINITION = 'definition' def get_params(): return EntryPointParameters({ "function": dict( flags=["-f", "--functionality"], type=str, required=True, choices=["overview", "definition"], help="Which functionality to run." ), "knob_names": dict( flags=["-k", "--knobs", "--knobnames"], type=str, nargs="+", default=[], help="Names of the knobs to show."
def __init__(self): logging_tools.getLogger("").handlers = [ ] # remove all handlers from root-logger logging_tools.get_logger("__main__", fmt="%(message)s") # set up new
from math import sqrt import re import logging from matplotlib import rc from collections import OrderedDict import matplotlib.pyplot as plt import matplotlib.mlab as mlab import matplotlib import pandas as pd BW = False LEN = 20 TWOPI = 2.0 * np.pi LOG = logging_tools.get_logger(__name__, level_console=logging.INFO) # ============================================================================= # ======== function definitions =============================================== # ============================================================================= OMC_LOGO = """ ###### ##L ## ###### d## ##b ###L ### #### ## ### ### ####L #### ### ## ## ## ##L ## ## ## ### ### ## ##L ## ## ### T##_ ##P ## ##L## ## ### ##### ## ### ## ###### """
@version: 0.0.1 GetLLM.algorithms.resonant_driving_terms.py stores helper functions for RDT calculations for GetLLM. This module is not intended to be executed. It stores only functions. ''' import sys import utils.bpm import helper import numpy as np from utils import logging_tools LogRdt = logging_tools.get_logger(__name__) exist_curve_fit = True try: from scipy.optimize import curve_fit except ImportError: exist_curve_fit = False DEBUG = sys.flags.debug # True with python option -d! ("python -d GetLLM.py...") (vimaier) RDT_LIST = ['f1001H', 'f1010H', 'f0110V', 'f1010V', #Quadrupolar 'f3000H', 'f1200H', 'f1020H', 'f1002H', #Normal Sextupolar 'f0111V', 'f1020V', 'f0120V', 'f1011V',
import pickle from utils.logging_tools import get_logger pickle_logger = get_logger("Pickle", "INFO") def pickle_save(data, pickle_file_name): with open(pickle_file_name, 'wb') as pickle_file: pickle.dump(data, pickle_file) pickle_logger.info("Pickle file {} saved".format(pickle_file_name)) def pickle_load(pickle_file_name): pickle_file = open(pickle_file_name, 'rb') pickle_logger.info("Pickle file {} loaded".format(pickle_file_name)) return pickle.load(pickle_file)
import os # noinspection PyUnresolvedReferences import __init__ from utils import logging_tools from utils.dict_tools import print_dict_tree from utils.entrypoint import ArgumentError from utils.entrypoint import EntryPoint from utils.entrypoint import EntryPointParameters from utils.entrypoint import entrypoint from model import manager manager._get_params() LOG = logging_tools.get_logger(__name__, level_console=0, fmt="%(levelname)7s | %(message)s") THISDIR = os.path.dirname(os.path.abspath(__file__)) # Example Parameter Definitions ################################################ def _get_params_arguments(): """ Parameters defined with EntryPointArguments (which is a dict *cough*) """ args = EntryPointParameters() args.add_parameter(name="accel", flags=["-a", "--accel"], help="Which accelerator: LHCB1 LHCB2 LHCB4? SPS RHIC TEVATRON", choices=["LHCB1","LHCB2","LHCB5"], default="LHCB1") args.add_parameter(name="dict",
from shutil import copyfile from os.path import abspath, join, dirname, pardir sys.path.append(abspath(join(dirname(__file__), pardir))) from model import manager, creator from utils import logging_tools from optics_measurements.io_filehandler import OpticsMeasurement from tfs_files.tfs_collection import TfsCollection, Tfs from tfs_files import tfs_pandas import sbs_propagables # TODO: Remove debug and set up log file import logging DEBUG = logging.DEBUG LOGGER = logging_tools.get_logger(__name__, level_console=DEBUG) PLANES = ("x", "y") def _parse_args(args=None): ''' Parses the arguments, checks for valid input and returns tuple It needs also the input needed to define the accelerator: --accel=<accel_name> and all the rest of the parameters needed to define given accelerator. e.g. for LHC runII 2017 beam 1 --accel lhc --lhcmode lhc_runII_2017 --beam 1 ''' parser = argparse.ArgumentParser() parser.add_argument("--measurement",
import os from os.path import abspath, join, dirname, pardir new_path = abspath(join(dirname(abspath(__file__)), pardir, pardir)) if new_path not in sys.path: sys.path.append(new_path) from utils import logging_tools from utils.dict_tools import print_dict_tree from utils.entrypoint import ArgumentError from utils.entrypoint import EntryPoint from utils.entrypoint import EntryPointParameters from utils.entrypoint import entrypoint # from model import manager # manager._get_params() LOG = logging_tools.get_logger(__name__, level_console=0, fmt="%(levelname)7s | %(message)s") THISDIR = os.path.dirname(os.path.abspath(__file__)) # Example Parameter Definitions ################################################ def _get_params_arguments(): """ Parameters defined with EntryPointArguments (which is a dict *cough*) """ args = EntryPointParameters() args.add_parameter(name="accel", flags=["-a", "--accel"], help="Which accelerator: LHCB1 LHCB2 LHCB4? SPS RHIC TEVATRON", choices=["LHCB1","LHCB2","LHCB5"], default="LHCB1") args.add_parameter(name="dict",
def main(level_console=0): log = logging_tools.get_logger(__name__, level_console=level_console) _write_messages(log)
#gc.set_debug(gc.DEBUG_LEAK) tracker = SummaryTracker() run_dir = get_run_dir() ## parameters from utils.params import callbacks_params, params keys = list(params) for params_index, values in enumerate( itertools.product(*map(params.get, keys))): tracker.print_diff() current_params = dict(zip(keys, values)) params_dir = run_dir + str(params_index) + '/' makedirs(params_dir) logger = get_logger(params_dir) logger.info("{}".format(current_params)) logger.info("index {}".format(params_index)) check_seed = 42 scale_data = False fit_params_dict = { 'batch_size': 16, 'epochs': current_params['epoch_num'], 'validation_split': 0.0, 'verbose': 0 } kfold_params_dict = {'n_splits': 10, 'shuffle': False, 'random_state': 42} logger.info("scale data {}".format(scale_data)) logger.info("{}".format(fit_params_dict)) logger.info("{}".format(callbacks_params))
def __init__(self, root_file_name, region_prefix, masses): self.root_file_name = root_file_name self.region_prefix = region_prefix self.masses = masses self._data = dict() self.logger = get_logger("SB", "INFO")
def build_data(args): # logger logger = get_logger("MAIN", "INFO") # PRE-DEFINITIONS region_prefix = "2tag2pjet_0ptv_SRLRJwindow" disc = "subsmhh" signal_prefix = "Hhhbbtautau" masses = [1000, 1100, 1200, 1400, 1600, 1800, 2000, 2500, 3000] binning = [0., 4000.] # histograms data logger.info("# 1 - Histograms") sbh = SBHistograms(args.input, region_prefix, masses) sbh.disc = disc sbh.signal_prefix = signal_prefix sbh.masscut = { "1000": "", "1100": "", "1200": "", "1400": "", "1600": "MHH900", "1800": "MHH900", "2000": "MHH900", "2500": "MHH1200", "3000": "MHH1200", } """ for discontinuity """ # sbh.masscut = { # "1000": "", # "1100": "", # "1200": "", # "1400": "", # "1600": "", # "1800": "MHH900", # "2000": "MHH900", # "2500": "MHH900", # "3000": "MHH1200", # } sbh.save_data(args.histograms) # yields data logger.info("# 2 - Yields") sby = SBYields(args.input, region_prefix, masses, binning) # sby.shape_systs = ['SysFATJET_Medium_JET_Comb_Baseline_Kin', # 'SysFATJET_Medium_JET_Comb_TotalStat_Kin', # 'SysFATJET_Medium_JET_Comb_Modelling_Kin', # 'SysFATJET_Medium_JET_Comb_Tracking_Kin', # 'SysFATJET_JER', 'SysFATJET_JMR', # 'SysTAUS_TRUEHADDITAU_EFF_JETID_TOTAL', # 'SysTAUS_TRUEHADDITAU_SME_TES_TOTAL', # 'SysMET_SoftTrk_ResoPerp', 'SysMET_SoftTrk_ResoPara', # 'SysMET_JetTrk_Scale', 'SysMET_SoftTrk_Scale', # 'SysPRW_DATASF', ] """ try those two """ sby.ditauSF_highPt = 0.1 # sby.ditauSF_highPt = 0.2 sby.diboson = ['WWPw', 'WZPw', 'ZZPw'] sby.Wjets = ['Wbb', 'Wbc', 'Wbl', 'Wcc', 'Wcl', 'Wl'] sby.Zhf = ['Zbb', 'Zbc', 'Zbl', 'Zcc'] sby.Zlf = ['Zcl', 'Zl'] sby.Zee = ['ZeeSh221'] sby.top = ['ttbar', 'stop', 'stops', 'stopt', 'stopWt', 'ttbar_allhad', 'ttbar_nonallhad'] sby.VH = ['VHtautau', 'WHtautau', 'ZHtautau', 'qqWlvH125', 'qqZllH125', 'qqZvvH125', 'ggZllH125', 'ggZvvH125'] sby.ignore = ['ttH', 'Hhhbbtautau1000lephad', 'Hhhbbtautau2000lephad'] sby.others = sby.diboson + sby.Wjets + sby.Zee + sby.top sby.for_histfitter = True sby.do_merging = True sby.disc = disc sby.signal_prefix = signal_prefix sby.cache_name = args.histograms sby.save_data(args.yields)