def download_file(filename):
tmp_filename = const.TMP_PATH+'/'+filename
utils.make_dir(os.path.dirname(tmp_filename))
logger.debug('Trying to download %s to %s from bucket %s', filename, tmp_filename, S3_BUCKET)
s3.download_file(S3_BUCKET, filename, tmp_filename,
Callback=ProgressPercentage(tmp_filename))
logger.debug('%s downloaded', filename)
def generate_annotations_file(self, root_dir, frames_dir, annotations_dir):
coded_ann_in_dirs = os.listdir(frames_dir)
print(annotations_dir)
for d in coded_ann_in_dirs:
folder_dir = os.path.join(frames_dir, d)
name_dir = os.path.join(annotations_dir, d)
make_dir(name_dir)
dict_seq = {}
text_name = str(name_dir) + "/dictionary.txt"
text_file = open(text_name, "w")
#obj_ids = []
print(name_dir)
k = 1
files_folder = sorted(os.listdir(folder_dir))
for f in files_folder:
print("File folder: ", f)
if f.endswith(self.ext):
image_file = os.path.join(folder_dir, f)
img = np.array(Image.open(image_file))
#obj_ids = np.append(obj_ids, np.unique(img))
axis_x = img.shape[0]
axis_y = img.shape[1]
for x in range(axis_x):
for y in range(axis_y):
if img[x, y] == 0:
img[x, y] = 0
elif img[x, y] == 10000:
img[x, y] = 0
else:
if str(img[x, y]) in dict_seq:
i = dict_seq[str(img[x, y])]
img[x, y] = i
else:
dict_seq.update({str(img[x, y]): k})
img[x, y] = k
k += 1
new_img = Image.fromarray(img)
name_file = os.path.join(name_dir, f)
new_img.save(name_file)
inverse_dict = {}
for k in dict_seq.keys():
inverse_dict.update({str(dict_seq[k]): int(k)})
text_file.write(json.dumps(inverse_dict))
text_file.close()
def evaluate_all(gt_file_dir, gt_img_dir, ckpt_path, gpuid='0'):
db = DB(ckpt_path, gpuid)
img_list = os.listdir(gt_img_dir)
show = './eva'
make_dir(show)
total_TP = 0
total_gt_care_num = 0
total_pred_care_num = 0
for img_name in tqdm.tqdm(img_list):
img = cv2.imread(os.path.join(gt_img_dir, img_name))
pred_box_list, pred_score_list, _ = db.detect_img(os.path.join(
gt_img_dir, img_name),
ispoly=True,
show_res=False)
gt_file_name = os.path.splitext(img_name)[0] + '.txt'
gt_boxes, tags = load_ctw1500_labels(
os.path.join(gt_file_dir, gt_file_name))
gt_care_list = []
gt_dontcare_list = []
for i, box in enumerate(gt_boxes):
box = box.reshape((-1, 2)).tolist()
if tags[i] == False:
gt_care_list.append(box)
else:
gt_dontcare_list.append(box)
precision, recall, f1_score, TP, gt_care_num, pred_care_num, pairs_list = evaluate(
gt_care_list, gt_dontcare_list, pred_box_list, overlap=0.5)
for pair in pairs_list:
cv2.polylines(img,
[np.array(pair['gt'], np.int).reshape([-1, 1, 2])],
True, (0, 255, 0))
cv2.polylines(img,
[np.array(pair['pred'], np.int).reshape([-1, 1, 2])],
True, (255, 0, 0))
cv2.imwrite(os.path.join(show, img_name), img)
total_TP += TP
total_gt_care_num += gt_care_num
total_pred_care_num += pred_care_num
total_precision = float(total_TP) / total_pred_care_num
total_recall = float(total_TP) / total_gt_care_num
total_f1_score = compute_f1_score(total_precision, total_recall)
return total_precision, total_recall, total_f1_score
def crop_videos(dataset_json, input_dir, output_dir, dataset="kinetics_train"):
# video_files = os.path.join(directory_json, directory_json_files)
json_file = os.path.join(dataset_json, dataset + ".json")
with open(json_file) as f:
data = json.load(f)
video_file_dir = os.path.join(input_dir, dataset, "*.mp4")
video_files = glob.glob(video_file_dir)
print(video_file_dir)
for video in video_files:
print("Reading ", video)
video_key = os.path.basename(video).split(".")[0]
segment = data[video_key]["annotations"]["segment"]
# print(segment)
cap = cv2.VideoCapture(video)
# print(cap.get(cv2.CAP_PROP_FPS))
video_fps = cap.get(cv2.CAP_PROP_FPS)
video_height = int(cap.get(cv2.CAP_PROP_FRAME_HEIGHT))
video_width = int(cap.get(cv2.CAP_PROP_FRAME_WIDTH))
time = int((segment[1] - segment[0]) * video_fps)
frames = np.empty((time, video_height, video_width, 3))
i = 0
frame_count = -1
j = 0
while (cap.isOpened()):
ret, frame = cap.read()
# print(video)
if not ret:
break
frame_count = frame_count + 1
current_time = frame_count / video_fps
if current_time < segment[0]:
# j = 0
# print("Current time ", current_time)
continue
else:
if j == time:
print("Breaking")
break
# cv2.imshow('frame1', frame)
# cv2.waitKey(25)
frames[j] = frame
j = j + 1
# else:
# break
save_dir = os.path.join(output_dir, dataset)
make_dir(save_dir)
output_file = os.path.join(output_dir, dataset, video_key + ".avi")
write_to_video(frames, output_file, video_height, video_width,
video_fps)
def __init__(self, model): # do not modify this section
self.config = config() # fetches the configuration from the json file
make_dir() # creates the Experiment directory
self.logs = Log() # creates the log file
self.summary = None # initializes summary variable
params() # pushes parameters values into log file
self.model = model # initialize the model passed
self.data = SplitProcess() # creates object of SplitProcess class
self.data.split() # splits the data
self.data.process_data() # process the data
def save(self, size):
'''
Saves replay memory (attributes and arrays).
'''
# Create out dir
utils.make_dir(self.data_dir)
print('Saving Memory data into Replay Memory Instance...')
# Save property dict
with open('{}/properties.json'.format(self.data_dir), 'w') as f:
json.dump(self.to_dict(size), f)
# Save arrays
self._save_arrays(self.data_dir, size)
def save_train_data(self,
model_name,
log_path,
config_path,
dataset,
save_graph=False):
make_dir(log_path + '/' + model_name)
torch.save(self.net, os.path.join(log_path, model_name, model_name))
copyfile(config_path,
log_path + '/' + model_name + '/{}.log'.format(model_name))
with open(log_path + '/' + model_name + '/dataset', 'w') as file:
file.write(json.dumps(dataset))
def multi_thread_scrapping(output_dir, catalog, product, num_thread=20):
make_dir(output_dir)
exist_files = get_exist_files(output_dir)
cad_infos = extract_data(catalog, product['partID'])
unfiltered = pd.DataFrame(cad_infos)
args = []
for idx, cad_info in unfiltered.iterrows():
if cad_info['partNumber'] not in exist_files:
args.append({'catalog': catalog, 'output_dir': output_dir, 'cad_info': cad_info})
pool = ThreadPool(num_thread)
pool.imap_unordered(download_thread, args)
pool.close()
pool.join()
def run(keyword, title_matching=False):
per_search = 100
init_results = search(keyword, per_search, offset=0)
total = init_results['total']
total_search = total // per_search
insert_search_log(keyword, total)
output_dir = f'{dw_path}/{keyword}'
make_dir(output_dir)
keyword_id = get_keyword_id(keyword)
print(f'{total} models found')
for i in range(total_search + 1):
results = search(keyword, per_search, offset=i * per_search)
for item in tqdm(results['entries']):
try:
id = item['id']
name = filter_escape_char(item['title'])
if is_model(id):
continue
if title_matching and keyword not in item['title'].lower():
continue
zip_file = download(output_dir, item)
if not zip_file:
continue
unzipped_dir = unzip_file(zip_file)
files = filter_files(unzipped_dir)
for file in files:
moved_file = move_file(join(unzipped_dir, file),
output_dir)
obj_file = convert_to_obj(moved_file)
# if 'bot_smontage' in item['binaryNames']:
# image = item['binaries']['bot_smontage']['contentUrl']
# else:
image = item['binaries']['bot_lt']['contentUrl']
insert_dw_file(id, name, image, obj_file, keyword_id)
shutil.rmtree(unzipped_dir)
except Exception as e:
logging.error(f'[{keyword}]:{e}')
clean_dir(output_dir)
create_image(output_dir)
def create_figures(self):
acc_samples = 0
results_root_dir = os.path.join('../models', args.model_name,
args.model_name + '_results')
make_dir(results_root_dir)
results_dir = os.path.join(results_root_dir, 'A1')
make_dir(results_dir)
print "Creating annotations for leaves validation..."
for batch_idx, (inputs, targets) in enumerate(self.loader):
x, y_mask, y_class, sw_mask, sw_class = batch_to_var(
self.args, inputs, targets)
out_masks, _, stop_probs = test(self.args, self.encoder,
self.decoder, x)
for sample in range(self.batch_size):
sample_idx = self.sample_list[sample + acc_samples]
image_dir = os.path.join(sample_idx.split('.')[0] + '.png')
im = scipy.misc.imread(image_dir)
h = im.shape[0]
w = im.shape[1]
mask_sample = np.zeros([h, w])
sample_idx = sample_idx.split('/')[-1].split('.')[0]
img_masks = out_masks[sample]
instance_id = 0
class_scores = stop_probs[sample]
for time_step in range(self.T):
mask = img_masks[time_step].cpu().numpy()
mask = scipy.misc.imresize(mask, [h, w])
class_scores_mask = class_scores[time_step].cpu().numpy()
class_score = class_scores_mask[0]
if class_score > args.class_th:
mask_sample[mask > args.mask_th * 255] = time_step
instance_id += 1
file_name = os.path.join(results_dir, sample_idx + '.png')
file_name_prediction = file_name.replace(
'rgb.png', 'label.png')
im = Image.fromarray(mask_sample).convert('L')
im.save(file_name_prediction)
acc_samples += self.batch_size
def load(self):
'''
Loads replay memory (attributes and arrays) into self, if possible.
'''
# Create out dir
utils.make_dir(self.data_dir)
try:
print('Loading Memory data into Replay Memory Instance...')
# Load property list
d = json.load(open('{}/properties.json'.format(self.data_dir)))
# Load numpy arrays
self._load_arrays(self.data_dir, d['saved_size'])
print('Finished loading Memory data into Replay Memory Instance!')
except IOError as e:
self.__init__(self.memory_size,
data_dir=self.data_dir, load_existing=False)
print("I/O error({0}): {1}".format(e.errno, e.strerror))
print("Couldn't find initial values for Replay Memory, instance init as new.")
def prepare_data(
self
) -> Tuple[str, str, str]:
temporary_dir = self.new_path_provider.provide()
logging.info('Created temporary directory: %s', temporary_dir)
training_dir = make_dir(temporary_dir, self.TRAINING_DIR)
test_dir = make_dir(temporary_dir, self.TEST_DIR)
examples_by_category = get_examples_by_category(self.data_path_provider.provide())
test_size = math.ceil(
min([len(examples) for examples in examples_by_category.values()]) * self.configuration.test_data)
for category in examples_by_category:
category_examples = examples_by_category[category].copy()
random.shuffle(category_examples)
test_examples = category_examples[:test_size]
category_test_dir = make_dir(test_dir, category.name)
copy_files_to_dir(test_examples, category_test_dir)
training_examples = category_examples[test_size:]
category_training_examples = make_dir(training_dir, category.name)
copy_files_to_dir(training_examples, category_training_examples)
return training_dir, test_dir, temporary_dir
def init():
make_dir(output_dir)
make_dir(log_dir)
make_dir(val_result_dir)
make_dir(val_result_pr_dir)
import torch
from torch.utils.data import DataLoader
from torch.utils.tensorboard import SummaryWriter
from utils.losses import maskedMSE
from utils.utils import Settings, make_dir
from utils.utils import get_multi_object_dataset, get_multi_object_net
args = Settings()
make_dir(args.log_path + args.model_type + '/')
make_dir(args.models_path + args.model_type + '/')
logger = SummaryWriter(args.log_path + args.name)
# logger.add_hparams(args.get_dict(), {})
trSet, valSet = get_multi_object_dataset()
net = get_multi_object_net()
if args.optimizer == 'Ranger':
optimizer = Ranger(net.parameters(),
lr=args.lr,
alpha=0.5,
k=5,
weight_decay=1e-3)
elif args.optimizer == 'Adam':
optimizer = torch.optim.Adam(net.parameters(),
lr=args.lr,
weight_decay=1e-3)
else:
import cv2
import torch
from tqdm import tqdm
from opts import Opts
from utils.utils import test_time_aug, make_dir, img_predict
def predict():
with tqdm(total=args.n_test, desc=f'Predict', unit='img') as p_bar:
for index, i in enumerate(os.listdir(args.dir_test)):
save_path = os.path.join(args.dir_result, i)
image = cv2.imread(os.path.join(args.dir_test, i))
img_predict(args, image, save_path=save_path)
p_bar.update(1)
if __name__ == '__main__':
args = Opts().init()
args.dir_test = os.path.join(args.dir_data, 'test')
args.n_test = len(os.listdir(args.dir_test))
args.net.load_state_dict(
torch.load(
os.path.join(args.dir_log, f'{args.dataset}_{args.arch}_{args.exp_id}.pth'), map_location=args.device
)
)
if args.tta:
args.net = test_time_aug(args.net, merge_mode='mean')
make_dir(dir_path=args.dir_result)
predict()
def train_loop(args,
encoder,
decoder,
train_loader,
valid_loader,
optimizer_encoder,
optimizer_decoder,
outpath,
device=None):
if device is None:
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
assert (args.save_dir
is not None), "Please specify directory of saving the models!"
make_dir(args.save_dir)
train_avg_losses = []
train_dts = []
valid_avg_losses = []
valid_dts = []
for ep in range(args.num_epochs):
if args.load_toTrain:
epoch = args.load_epoch + ep + 1
else:
epoch = ep
# Training
start = time.time()
train_avg_loss, train_gen_imgs = train(args,
encoder,
decoder,
train_loader,
epoch,
optimizer_encoder,
optimizer_decoder,
outpath,
is_train=True,
device=device)
train_dt = time.time() - start
train_avg_losses.append(train_avg_loss)
train_dts.append(train_dt)
save_data(data=train_avg_loss,
data_name="loss",
epoch=epoch,
outpath=outpath,
is_train=True)
save_data(data=train_dt,
data_name="dt",
epoch=epoch,
outpath=outpath,
is_train=True)
# Validation
start = time.time()
valid_avg_loss, valid_gen_imgs = test(args,
encoder,
decoder,
valid_loader,
epoch,
optimizer_encoder,
optimizer_decoder,
outpath,
device=device)
valid_dt = time.time() - start
valid_avg_losses.append(train_avg_loss)
valid_dts.append(valid_dt)
save_data(data=valid_avg_loss,
data_name="loss",
epoch=epoch,
outpath=outpath,
is_train=False)
save_data(data=valid_dt,
data_name="dt",
epoch=epoch,
outpath=outpath,
is_train=False)
print(
f'epoch={epoch+1}/{args.num_epochs if not args.load_toTrain else args.num_epochs+args.load_epoch}, '
+
f'train_loss={train_avg_loss}, valid_loss={valid_avg_loss}, dt={train_dt+valid_dt}'
)
if (epoch > 0) and ((epoch + 1) % 10 == 0):
plot_eval_results(args, (train_avg_losses, valid_avg_losses),
f"losses to {epoch+1}",
outpath,
global_data=False)
# Save global data
save_data(data=train_avg_losses,
data_name="losses",
epoch="global",
outpath=outpath,
is_train=True,
global_data=True)
save_data(data=train_dts,
data_name="dts",
epoch="global",
outpath=outpath,
is_train=True,
global_data=True)
save_data(data=valid_avg_losses,
data_name="losses",
epoch="global",
outpath=outpath,
is_train=False,
global_data=True)
save_data(data=valid_dts,
data_name="dts",
epoch="global",
outpath=outpath,
is_train=False,
global_data=True)
return train_avg_losses, valid_avg_losses, train_dts, valid_dts
def train(args, encoder, decoder, loader, epoch, optimizer_encoder,
optimizer_decoder, outpath, is_train, device):
epoch_total_loss = 0
labels = []
gen_imgs = []
if args.compareFigs:
original = []
if is_train:
encoder.train()
decoder.train()
# else:
# encoder.eval()
# decoder.eval()
for i, batch in enumerate(loader, 0):
X, Y = batch[0].to(device), batch[1]
batch_gen_imgs = decoder(encoder(X), args)
loss = ChamferLoss(device)
batch_loss = loss(batch_gen_imgs, X)
epoch_total_loss += batch_loss.item()
# True if batch_loss has at least one NaN value
if (batch_loss != batch_loss).any():
raise RuntimeError('Batch loss is NaN!')
# back prop
if is_train:
optimizer_encoder.zero_grad()
optimizer_decoder.zero_grad()
batch_loss.backward()
optimizer_encoder.step()
optimizer_decoder.step()
# print(f"epoch {epoch+1}, batch {i+1}/{len(loader)}, train_loss={batch_loss.item()}", end='\r', flush=True)
# else:
# print(f"epoch {epoch+1}, batch {i+1}/{len(loader)}, valid_loss={batch_loss.item()}", end='\r', flush=True)
# Save all generated images
if args.save_figs and args.save_allFigs:
labels.append(Y.cpu())
gen_imgs.append(torch.tanh(batch_gen_imgs).cpu())
if args.compareFigs:
original.append(X.cpu())
# Save only the last batch
elif args.save_figs:
if (i == len(loader) - 1):
labels.append(Y.cpu())
gen_imgs.append(torch.tanh(batch_gen_imgs).cpu())
if args.compareFigs:
original.append(X.cpu())
# Save model
if is_train:
make_dir(f'{outpath}/weights_encoder')
make_dir(f'{outpath}/weights_decoder')
torch.save(
encoder.state_dict(),
f"{outpath}/weights_encoder/epoch_{epoch+1}_encoder_weights.pth")
torch.save(
decoder.state_dict(),
f"{outpath}/weights_decoder/epoch_{epoch+1}_decoder_weights.pth")
# Compute average loss
epoch_avg_loss = epoch_total_loss / len(loader)
save_data(epoch_avg_loss, "loss", epoch, is_train, outpath)
for i in range(len(gen_imgs)):
if args.compareFigs:
save_gen_imgs(gen_imgs[i],
labels[i],
epoch,
is_train,
outpath,
originals=original[i].cpu())
else:
save_gen_imgs(gen_imgs[i], labels[i], epoch, is_train, outpath)
return epoch_avg_loss, gen_imgs
def save_seq_results(model_name, seq_name, prev_mask):
results_dir = os.path.join('../models', model_name,
'masks_sep_2assess_val_davis', seq_name)
submission_dir = os.path.join('../models', model_name, 'Annotations-davis',
seq_name)
lmdb_env_seq = lmdb.open(osp.join(cfg.PATH.DATA, 'lmdb_seq'))
make_dir(submission_dir)
prev_assignment = []
images_dir = os.path.join('../../databases/DAVIS2017/JPEGImages/480p/',
seq_name)
image_names = os.listdir(images_dir)
image_names.sort()
starting_img_name = image_names[0]
starting_frame = int(starting_img_name[:-4])
key_db = osp.basename(seq_name)
with lmdb_env_seq.begin() as txn:
_files_vec = txn.get(key_db.encode()).decode().split('|')
_files = [osp.splitext(f)[0] for f in _files_vec]
frame_names = _files
frame_names.sort()
frame_idx = 0
obj_ids_sorted_increasing_jaccard = []
for frame_name in frame_names:
if frame_idx == 0:
annotation = np.array(
Image.open('../../databases/DAVIS2017/Annotations/480p/' +
seq_name + '/' + frame_name + '.png'))
instance_ids = sorted(np.unique(annotation))
instance_ids = instance_ids if instance_ids[0] else instance_ids[1:]
if len(instance_ids) > 0:
instance_ids = instance_ids[:-1] if instance_ids[
-1] == 255 else instance_ids
res_im = Image.fromarray(annotation, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
#compute assignment between predictions from first frame and ground truth from first frame
if prev_mask == True:
num_preds = len(instance_ids)
else:
num_preds = 10
cost = np.ones((len(instance_ids), num_preds))
for obj_id in instance_ids:
annotation_obj = np.zeros(annotation.shape)
annotation_obj[annotation == obj_id] = 1
for pred_id in range(num_preds):
if prev_mask == True:
pred_mask = imread(results_dir + '/' + frame_name +
'_instance_%02d.png' % pred_id)
else:
pred_mask = imread(
results_dir + '/' + '%05d_instance_%02d.png' %
(starting_frame + frame_idx, pred_id))
pred_mask_resized = imresize(pred_mask,
annotation.shape,
interp='nearest')
cost[obj_id - 1, pred_id] = 1 - jaccard_simple(
annotation_obj, pred_mask_resized)
row_ind, col_ind = linear_sum_assignment(cost)
prev_assignment = col_ind
cost_objs = {}
for obj_id in instance_ids:
cost_objs[obj_id] = cost[obj_id - 1,
prev_assignment[obj_id - 1]]
obj_ids_sorted_increasing_jaccard = sorted(cost_objs.items(),
key=lambda kv: kv[1],
reverse=True)
else:
pred_mask_resized = np.zeros(annotation.shape, dtype=np.uint8)
for obj_id, jaccard_val in obj_ids_sorted_increasing_jaccard:
instance_assigned_id = prev_assignment[obj_id - 1]
if prev_mask == True:
pred_mask = imread(results_dir + '/' + frame_name +
'_instance_%02d.png' %
instance_assigned_id)
else:
pred_mask = imread(
results_dir + '/' + '%05d_instance_%02d.png' %
(starting_frame + frame_idx, instance_assigned_id))
pred_mask_resized_aux = imresize(pred_mask,
annotation.shape,
interp='nearest')
pred_mask_resized[pred_mask_resized_aux == 255] = obj_id
res_im = Image.fromarray(pred_mask_resized, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
frame_idx = frame_idx + 1
def create_res_catalogue(outcat_prefix, RESULTS_CAT, global_parameters):
outcat = os.path.join(
RESULTS_CAT, outcat_prefix +
'_'.join(global_parameters).replace('/', '').replace('.', ''))
make_dir(outcat)
return outcat
def main():
# Config
stock_tickers = ["AAPL", "BA", "TSLA"]
n_stock = len(stock_tickers)
n_forecast = 0
n_sentiment = 0
models_folder = 'saved_models'
rewards_folder = 'saved_rewards'
rl_folder = 'saved_models/rl'
rl_rewards = 'saved_rewards/rl'
lstm_folder = 'saved_models/lstm'
news_folder = './data/news'
forecast_window = 10
num_episodes = 300
batch_size = 16
initial_investment = 10000
# Parser arguments
parser = argparse.ArgumentParser()
parser.add_argument(
'-f',
'--forecast',
type=str,
default=None,
help='Enable stock forecasting. Select "one" or "multi"')
parser.add_argument(
'-s',
'--sentiment',
type=bool,
default=False,
help='Enable sentiment analysis. Select "True" or "False"')
parser.add_argument('-a',
'--agent',
type=str,
default="DQN",
help='Select "DQN" or "DDPG"')
args = parser.parse_args()
make_dir(models_folder)
make_dir(rewards_folder)
make_dir(rl_folder)
make_dir(rl_rewards)
make_dir(lstm_folder)
# Get data
data = get_data("./data", stock_tickers)
print()
# Generate state (features) based on arguments (forecast & sentiment)
if args.forecast == None and args.sentiment == False:
data = data.drop(
columns="timestamp").iloc[forecast_window:].reset_index(
drop=True).values
elif args.forecast != None and args.sentiment == False:
concat_data = data.iloc[forecast_window:].reset_index(drop=True)
for ticker in stock_tickers:
print(f"Performing {ticker} {args.forecast.title()}step Forecast")
predictions = {}
predictions[f'{ticker}_Forecast'] = lstm_forecast(
models_folder, ticker, data, forecast_window,
args.forecast.lower())
# predictions[f'{ticker}_Forecast'] = pd.DataFrame(predictions)
# predictions[f'{ticker}_Forecast'].index = pd.RangeIndex(forecast_window, forecast_window + len(predictions[f'{ticker}_Forecast']))
concat_data = pd.concat(
[concat_data, pd.DataFrame(predictions)], join="outer", axis=1)
print(f"{args.forecast.title()}step Forecasts Added!\n")
data = concat_data.drop(columns="timestamp").values
n_forecast = len(stock_tickers)
elif args.forecast != None and args.sentiment:
concat_data = data.iloc[forecast_window:].reset_index(drop=True)
for ticker in stock_tickers:
print(f"Performing {ticker} {args.forecast.title()}step Forecast")
predictions = {}
predictions[f'{ticker}_Forecast'] = lstm_forecast(
models_folder, ticker, data, forecast_window,
args.forecast.lower())
# predictions[f'{ticker}_Forecast'] = pd.DataFrame(predictions)
# predictions[f'{ticker}_Forecast'].index = pd.RangeIndex(forecast_window, forecast_window + len(predictions[f'{ticker}_Forecast']))
concat_data = pd.concat(
[concat_data, pd.DataFrame(predictions)], join="outer", axis=1)
print(f"{args.forecast.title()}step Forecasts Added!\n")
for ticker in stock_tickers:
print(f"Analyzing {ticker} Stock Sentiment")
sentiment_df = sentiment_analysis(news_folder, ticker)
concat_data = pd.merge(concat_data,
sentiment_df,
left_on="timestamp",
right_on="publishedAt").drop(
columns="publishedAt", axis=1)
print("Sentiment Features Added!\n")
print(concat_data)
data = concat_data.drop(columns="timestamp").values
n_forecast = len(stock_tickers)
n_sentiment = len(stock_tickers)
elif args.sentiment:
concat_data = data
for ticker in stock_tickers:
print(f"Analyzing {ticker} Stock Sentiment")
sentiment_df = sentiment_analysis(news_folder, ticker)
# print(sentiment_df)
concat_data = pd.merge(concat_data,
sentiment_df,
left_on="timestamp",
right_on="publishedAt").drop(
columns="publishedAt", axis=1)
print("Sentiment Features Added!\n")
data = concat_data.drop(columns="timestamp").values
n_sentiment = len(stock_tickers)
n_timesteps, _ = data.shape
n_train = n_timesteps
train_data = data[:n_train]
test_data = data[n_train:]
# Initialize the MultiStock Environment
env = MultiStockEnv(train_data, n_stock, n_forecast, n_sentiment,
initial_investment, "DQN")
state_size = env.state_dim
action_size = len(env.action_space)
agent = DQNAgent(state_size, action_size)
scaler = get_scaler(env)
# Store the final value of the portfolio (end of episode)
portfolio_value = []
######### DDPG #########
# Run with DDPG Agent
if args.agent.lower() == "ddpg":
env = MultiStockEnv(train_data, n_stock, n_forecast, n_sentiment,
initial_investment, "DDPG")
DDPGAgent(env, num_episodes)
exit()
######### /DDPG #########
######### DQN #########
# Run with DQN
# play the game num_episodes times
print("\nRunning DQN Agent...\n")
for e in range(num_episodes):
val = play_one_episode(agent, env, scaler, batch_size)
print(f"episode: {e + 1}/{num_episodes}, episode end value: {val:.2f}")
portfolio_value.append(val) # append episode end portfolio value
# save the weights when we are done
# save the DQN
agent.save(f'{models_folder}/rl/dqn.h5')
# save the scaler
with open(f'{models_folder}/rl/scaler.pkl', 'wb') as f:
pickle.dump(scaler, f)
# save portfolio value for each episode
np.save(f'{rewards_folder}/rl/dqn.npy', portfolio_value)
print("\nDQN Agent run complete and saved!")
a = np.load(f'./saved_rewards/rl/dqn.npy')
print(
f"\nCumulative Portfolio Value Average: {a.mean():.2f}, Min: {a.min():.2f}, Max: {a.max():.2f}"
)
plt.plot(a)
plt.title(f"Portfolio Value Per Episode ({args.agent.upper()})")
plt.ylabel("Portfolio Value")
plt.xlabel("Episodes")
plt.show()
annotation.shape,
interp='nearest')
pred_mask_resized[pred_mask_resized_aux == 255] = obj_id
res_im = Image.fromarray(pred_mask_resized, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
frame_idx = frame_idx + 1
if __name__ == "__main__":
parser = argparse.ArgumentParser(description='Plot visual results.')
parser.add_argument('-model_name', dest='model_name', default='model')
parser.add_argument('--prev_mask', dest='prev_mask', action='store_true')
parser.set_defaults(prev_mask=False)
args = parser.parse_args()
with open('./dataloader/db_info.yaml', 'r') as f:
sequences = edict(yaml.load(f)).sequences
sequences = filter(lambda s: s.set == 'test-dev', sequences)
submission_base_dir = os.path.join('../models', args.model_name,
'Annotations-davis')
make_dir(submission_base_dir)
for seq_name in sequences:
save_seq_results(args.model_name, seq_name.name, args.prev_mask)
import logging
import argparse
from datetime import datetime
from database import agent
from scrapper.grab_cad import run as grabCAD_run
from scrapper.dw import run as DW_run
from scrapper.trace_parts import run as traceParts_run
from utils.utils import make_dir
from tools import get_keywords
make_dir('log')
logging.basicConfig(filename=f'log/{datetime.now().strftime("%y%m%d_%H%M%S")}.log', level=logging.ERROR)
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument('-k', '--keywords', default=None, type=str)
args = parser.parse_args()
def search(keyword, websites=None):
if websites is None:
websites = ['grabcad', '3dw']
keyword = keyword.lower()
logging.info(f'KEYWORD: {keyword}')
if keyword not in get_keywords():
agent.insert('keyword', ignore=True, **{'name': keyword})
if 'grabcad' in websites:
def trainIters(args):
epoch_resume = 0
model_dir = os.path.join('../models/',
args.model_name + '_prev_inference_mask')
if args.resume:
# will resume training the model with name args.model_name
encoder_dict, decoder_dict, enc_opt_dict, dec_opt_dict, load_args = load_checkpoint(
args.model_name, args.use_gpu)
epoch_resume = load_args.epoch_resume
encoder = FeatureExtractor(load_args)
decoder = RSISMask(load_args)
encoder_dict, decoder_dict = check_parallel(encoder_dict, decoder_dict)
encoder.load_state_dict(encoder_dict)
decoder.load_state_dict(decoder_dict)
args = load_args
elif args.transfer:
# load model from args and replace last fc layer
encoder_dict, decoder_dict, _, _, load_args = load_checkpoint(
args.transfer_from, args.use_gpu)
encoder = FeatureExtractor(load_args)
decoder = RSISMask(args)
encoder_dict, decoder_dict = check_parallel(encoder_dict, decoder_dict)
encoder.load_state_dict(encoder_dict)
decoder.load_state_dict(decoder_dict)
else:
encoder = FeatureExtractor(args)
decoder = RSISMask(args)
# model checkpoints will be saved here
make_dir(model_dir)
# save parameters for future use
pickle.dump(args, open(os.path.join(model_dir, 'args.pkl'), 'wb'))
encoder_params = get_base_params(args, encoder)
skip_params = get_skip_params(encoder)
decoder_params = list(decoder.parameters()) + list(skip_params)
dec_opt = get_optimizer(args.optim, args.lr, decoder_params,
args.weight_decay)
enc_opt = get_optimizer(args.optim_cnn, args.lr_cnn, encoder_params,
args.weight_decay_cnn)
if args.resume:
enc_opt.load_state_dict(enc_opt_dict)
dec_opt.load_state_dict(dec_opt_dict)
from collections import defaultdict
dec_opt.state = defaultdict(dict, dec_opt.state)
if not args.log_term:
print("Training logs will be saved to:",
os.path.join(model_dir, 'train.log'))
sys.stdout = open(os.path.join(model_dir, 'train.log'), 'w')
sys.stderr = open(os.path.join(model_dir, 'train.err'), 'w')
print(args)
# objective function for mask
mask_siou = softIoULoss()
if args.use_gpu:
encoder.cuda()
decoder.cuda()
mask_siou.cuda()
crits = mask_siou
optims = [enc_opt, dec_opt]
if args.use_gpu:
torch.cuda.synchronize()
start = time.time()
# vars for early stopping
best_val_loss = args.best_val_loss
acc_patience = 0
mt_val = -1
# keep track of the number of batches in each epoch for continuity when plotting curves
loaders = init_dataloaders(args)
num_batches = {'train': 0, 'val': 0}
#area_range = [[0 ** 2, 1e5 ** 2], [0 ** 2, 20 ** 2], [20 ** 2, 59 ** 2], [59 ** 2, 1e5 ** 2]]
area_range = [[0**2, 1e5**2], [0**2, 30**2], [30**2, 90**2],
[90**2, 1e5**2]] #for (287,950))
resolution = 0
for e in range(args.max_epoch):
print("Epoch", e + epoch_resume)
# store losses in lists to display average since beginning
epoch_losses = {
'train': {
'total': [],
'iou': []
},
'val': {
'total': [],
'iou': []
}
}
# total mean for epoch will be saved here to display at the end
total_losses = {'total': [], 'iou': []}
# check if it's time to do some changes here
if e + epoch_resume >= args.finetune_after and not args.update_encoder and not args.finetune_after == -1:
print("Starting to update encoder")
args.update_encoder = True
acc_patience = 0
mt_val = -1
if args.loss_penalization:
if e < 10:
resolution = area_range[2]
else:
resolution = area_range[0]
# we validate after each epoch
for split in ['train', 'val']:
if args.dataset == 'davis2017' or args.dataset == 'youtube' or args.dataset == 'kittimots':
loaders[split].dataset.set_epoch(e)
for batch_idx, (inputs, targets, seq_name,
starting_frame) in enumerate(loaders[split]):
# send batch to GPU
prev_hidden_temporal_list = None
loss = None
last_frame = False
max_ii = min(len(inputs), args.length_clip)
for ii in range(max_ii):
# If are on the last frame from a clip, we will have to backpropagate the loss back to the beginning of the clip.
if ii == max_ii - 1:
last_frame = True
# x: input images (N consecutive frames from M different sequences)
# y_mask: ground truth annotations (some of them are zeros to have a fixed length in number of object instances)
# sw_mask: this mask indicates which masks from y_mask are valid
x, y_mask, sw_mask = batch_to_var(
args, inputs[ii], targets[ii])
if ii == 0:
prev_mask = y_mask
# From one frame to the following frame the prev_hidden_temporal_list is updated.
loss, losses, outs, hidden_temporal_list = runIter(
args, encoder, decoder, x, y_mask, sw_mask,
resolution, crits, optims, split, loss,
prev_hidden_temporal_list, prev_mask, last_frame)
# Hidden temporal state from time instant ii is saved to be used when processing next time instant ii+1
if args.only_spatial == False:
prev_hidden_temporal_list = hidden_temporal_list
prev_mask = outs
# store loss values in dictionary separately
epoch_losses[split]['total'].append(losses[0])
epoch_losses[split]['iou'].append(losses[1])
# print after some iterations
if (batch_idx + 1) % args.print_every == 0:
mt = np.mean(epoch_losses[split]['total'])
mi = np.mean(epoch_losses[split]['iou'])
te = time.time() - start
print("iter %d:\ttotal:%.4f\tiou:%.4f\ttime:%.4f" %
(batch_idx, mt, mi, te))
if args.use_gpu:
torch.cuda.synchronize()
start = time.time()
num_batches[split] = batch_idx + 1
# compute mean val losses within epoch
if split == 'val' and args.smooth_curves:
if mt_val == -1:
mt = np.mean(epoch_losses[split]['total'])
else:
mt = 0.9 * mt_val + 0.1 * np.mean(
epoch_losses[split]['total'])
mt_val = mt
else:
mt = np.mean(epoch_losses[split]['total'])
mi = np.mean(epoch_losses[split]['iou'])
# save train and val losses for the epoch
total_losses['iou'].append(mi)
total_losses['total'].append(mt)
args.epoch_resume = e + epoch_resume
print("Epoch %d:\ttotal:%.4f\tiou:%.4f\t(%s)" % (e, mt, mi, split))
if mt < (best_val_loss - args.min_delta):
print("Saving checkpoint.")
best_val_loss = mt
args.best_val_loss = best_val_loss
# saves model, params, and optimizers
save_checkpoint_prev_inference_mask(args, encoder, decoder,
enc_opt, dec_opt)
acc_patience = 0
else:
acc_patience += 1
if acc_patience > args.patience and not args.update_encoder and not args.finetune_after == -1:
print("Starting to update encoder")
acc_patience = 0
args.update_encoder = True
best_val_loss = 1000 # reset because adding a loss term will increase the total value
mt_val = -1
encoder_dict, decoder_dict, enc_opt_dict, dec_opt_dict, _ = load_checkpoint(
args.model_name, args.use_gpu)
encoder.load_state_dict(encoder_dict)
decoder.load_state_dict(decoder_dict)
enc_opt.load_state_dict(enc_opt_dict)
dec_opt.load_state_dict(dec_opt_dict)
# early stopping after N epochs without improvement
if acc_patience > args.patience_stop:
break
def run_eval(self):
print("Dataset is %s" % (self.dataset))
print("Split is %s" % (self.split))
if args.overlay_masks:
colors = []
palette = sequence_palette()
inv_palette = {}
for k, v in palette.items():
inv_palette[v] = k
num_colors = len(inv_palette.keys())
for id_color in range(num_colors):
if id_color == 0 or id_color == 21:
continue
c = inv_palette[id_color]
colors.append(c)
if self.split == 'val':
if args.dataset == 'youtube':
masks_sep_dir = os.path.join('../models', args.model_name,
'masks_sep_2assess')
make_dir(masks_sep_dir)
if args.overlay_masks:
results_dir = os.path.join('../models', args.model_name,
'results')
make_dir(results_dir)
json_data = open(
'../../databases/YouTubeVOS/train/train-val-meta.json')
data = json.load(json_data)
else:
masks_sep_dir = os.path.join('../models', args.model_name,
'masks_sep_2assess-davis')
make_dir(masks_sep_dir)
if args.overlay_masks:
results_dir = os.path.join('../models', args.model_name,
'results-davis')
make_dir(results_dir)
for batch_idx, (inputs, targets, seq_name,
starting_frame) in enumerate(self.loader):
prev_hidden_temporal_list = None
max_ii = min(len(inputs), args.length_clip)
base_dir_masks_sep = masks_sep_dir + '/' + seq_name[0] + '/'
make_dir(base_dir_masks_sep)
if args.overlay_masks:
base_dir = results_dir + '/' + seq_name[0] + '/'
make_dir(base_dir)
for ii in range(max_ii):
# x: input images (N consecutive frames from M different sequences)
# y_mask: ground truth annotations (some of them are zeros to have a fixed length in number of object instances)
# sw_mask: this mask indicates which masks from y_mask are valid
x, y_mask, sw_mask = batch_to_var(args, inputs[ii],
targets[ii])
print(seq_name[0] + '/' + '%05d' %
(starting_frame[0] + ii))
#from one frame to the following frame the prev_hidden_temporal_list is updated.
outs, hidden_temporal_list = test(
args, self.encoder, self.decoder, x,
prev_hidden_temporal_list)
if args.dataset == 'youtube':
num_instances = len(
data['videos'][seq_name[0]]['objects'])
else:
num_instances = 1 #int(torch.sum(sw_mask.data).data.cpu().numpy())
x_tmp = x.data.cpu().numpy()
height = x_tmp.shape[-2]
width = x_tmp.shape[-1]
for t in range(10):
mask_pred = (torch.squeeze(outs[0,
t, :])).cpu().numpy()
mask_pred = np.reshape(mask_pred, (height, width))
indxs_instance = np.where(mask_pred > 0.5)
mask2assess = np.zeros((height, width))
mask2assess[indxs_instance] = 255
toimage(mask2assess, cmin=0,
cmax=255).save(base_dir_masks_sep +
'%05d_instance_%02d.png' %
(starting_frame[0] + ii, t))
if args.overlay_masks:
frame_img = x.data.cpu().numpy()[0, :, :, :].squeeze()
frame_img = np.transpose(frame_img, (1, 2, 0))
mean = np.array([0.485, 0.456, 0.406])
std = np.array([0.229, 0.224, 0.225])
frame_img = std * frame_img + mean
frame_img = np.clip(frame_img, 0, 1)
plt.figure()
plt.axis('off')
plt.figure()
plt.axis('off')
plt.imshow(frame_img)
for t in range(num_instances):
mask_pred = (torch.squeeze(
outs[0, t, :])).cpu().numpy()
mask_pred = np.reshape(mask_pred, (height, width))
ax = plt.gca()
tmp_img = np.ones(
(mask_pred.shape[0], mask_pred.shape[1], 3))
color_mask = np.array(colors[t]) / 255.0
for i in range(3):
tmp_img[:, :, i] = color_mask[i]
ax.imshow(np.dstack((tmp_img, mask_pred * 0.7)))
figname = base_dir + 'frame_%02d.png' % (
starting_frame[0] + ii)
plt.savefig(figname, bbox_inches='tight')
plt.close()
if self.video_mode:
prev_hidden_temporal_list = hidden_temporal_list
else:
if args.dataset == 'youtube':
masks_sep_dir = os.path.join('../models', args.model_name,
'masks_sep_2assess_val')
make_dir(masks_sep_dir)
if args.overlay_masks:
results_dir = os.path.join('../models', args.model_name,
'results_val')
make_dir(results_dir)
json_data = open('../../databases/YouTubeVOS/val/meta.json')
data = json.load(json_data)
else:
masks_sep_dir = os.path.join('../models', args.model_name,
'masks_sep_2assess_val_davis')
make_dir(masks_sep_dir)
if args.overlay_masks:
results_dir = os.path.join('../models', args.model_name,
'results_val_davis')
make_dir(results_dir)
for batch_idx, (inputs, seq_name,
starting_frame) in enumerate(self.loader):
prev_hidden_temporal_list = None
max_ii = min(len(inputs), args.length_clip)
for ii in range(max_ii):
# x: input images (N consecutive frames from M different sequences)
x = batch_to_var_test(args, inputs[ii])
print(seq_name[0] + '/' + '%05d' %
(starting_frame[0] + ii))
if ii == 0:
if args.dataset == 'youtube':
num_instances = len(
data['videos'][seq_name[0]]['objects'])
else:
annotation = Image.open(
'../../databases/DAVIS2017/Annotations/480p/' +
seq_name[0] + '/00000.png')
instance_ids = sorted(np.unique(annotation))
instance_ids = instance_ids if instance_ids[
0] else instance_ids[1:]
if len(instance_ids) > 0:
instance_ids = instance_ids[:-1] if instance_ids[
-1] == 255 else instance_ids
num_instances = len(instance_ids)
#from one frame to the following frame the prev_hidden_temporal_list is updated.
outs, hidden_temporal_list = test(
args, self.encoder, self.decoder, x,
prev_hidden_temporal_list)
base_dir_masks_sep = masks_sep_dir + '/' + seq_name[0] + '/'
make_dir(base_dir_masks_sep)
if args.overlay_masks:
base_dir = results_dir + '/' + seq_name[0] + '/'
make_dir(base_dir)
x_tmp = x.data.cpu().numpy()
height = x_tmp.shape[-2]
width = x_tmp.shape[-1]
for t in range(10):
mask_pred = (torch.squeeze(outs[0,
t, :])).cpu().numpy()
mask_pred = np.reshape(mask_pred, (height, width))
indxs_instance = np.where(mask_pred > 0.5)
mask2assess = np.zeros((height, width))
mask2assess[indxs_instance] = 255
toimage(mask2assess, cmin=0,
cmax=255).save(base_dir_masks_sep +
'%05d_instance_%02d.png' %
(starting_frame[0] + ii, t))
if args.overlay_masks:
frame_img = x.data.cpu().numpy()[0, :, :, :].squeeze()
frame_img = np.transpose(frame_img, (1, 2, 0))
mean = np.array([0.485, 0.456, 0.406])
std = np.array([0.229, 0.224, 0.225])
frame_img = std * frame_img + mean
frame_img = np.clip(frame_img, 0, 1)
plt.figure()
plt.axis('off')
plt.figure()
plt.axis('off')
plt.imshow(frame_img)
for t in range(num_instances):
mask_pred = (torch.squeeze(
outs[0, t, :])).cpu().numpy()
mask_pred = np.reshape(mask_pred, (height, width))
ax = plt.gca()
tmp_img = np.ones(
(mask_pred.shape[0], mask_pred.shape[1], 3))
color_mask = np.array(colors[t]) / 255.0
for i in range(3):
tmp_img[:, :, i] = color_mask[i]
ax.imshow(np.dstack((tmp_img, mask_pred * 0.7)))
figname = base_dir + 'frame_%02d.png' % (
starting_frame[0] + ii)
plt.savefig(figname, bbox_inches='tight')
plt.close()
if self.video_mode:
prev_hidden_temporal_list = hidden_temporal_list
from torch.utils.tensorboard import SummaryWriter
from losses import maskedNLL, maskedMSE
from utils.utils import Settings, get_dataset, get_net, make_dir
args = Settings()
def lr_scheduler(optim, iter):
if iter < 10:
optim.param_groups[0]['lr'] = args.lr/10 *iter
elif iter > 30:
optim.param_groups[0]['lr'] = args.lr*(30/iter)
else:
optim.param_groups[0]['lr'] = args.lr
make_dir(args.log_path + 'unique_object/' + args.model_type + '/')
make_dir(args.models_path + 'unique_object/' + args.model_type + '/')
logger = SummaryWriter(args.log_path + 'unique_object/' + args.model_type + '/' + args.name)
# logger.add_hparams(args.get_dict(), {})
trSet, valSet = get_dataset()
net = get_net()
if args.optimizer == 'Ranger':
optimizer = Ranger(net.parameters(), lr=args.lr, alpha=0.5, k=5)
elif args.optimizer == 'Adam':
optimizer = torch.optim.Adam(net.parameters(), lr=args.lr)
else:
optimizer = torch.optim.SGD(net.parameters(), lr=args.lr)
def main(args):
# make the export folder structure
# this is made here because the Logger uses the filename
if args.do_save:
# make a base save directory
utils.make_dir(args.save_dir)
# make a directory in the base save directory with for the specific
# method.
save_subdir = os.path.join(args.save_dir,
args.dataset + "_" + args.sampling_method)
utils.make_dir(save_subdir)
filename = os.path.join(
save_subdir,
"log-" + strftime("%Y-%m-%d-%H-%M-%S", gmtime()) + ".txt")
sys.stdout = utils.Logger(filename)
# confusion argument can have multiple values
confusions = [float(t) for t in args.confusions.split(" ")]
mixtures = [float(t) for t in args.active_sampling_percentage.split(" ")]
max_dataset_size = None if args.max_dataset_size == 0 else args.max_dataset_size
starting_seed = args.seed
# get the dataset from file based on the data directory and dataset name
X, y = utils.get_mldata(args.data_dir, args.dataset)
# object to store the results in
all_results = {}
# percentage of labels to randomize
for c in confusions:
# Mixture weights on active sampling."
for m in mixtures:
# the number of curves created during multiple trials
for seed in range(starting_seed, starting_seed + args.trials):
# get the sampler based on the name
# returns a python object
# also named: query strategy
sampler = get_AL_sampler(args.sampling_method)
# get the model
score_model = utils.get_model(args.score_method, seed)
#
if (args.select_method == "None"
or args.select_method == args.score_method):
select_model = None
else:
select_model = utils.get_model(args.select_method, seed)
# create the learning curve
results, sampler_state = generate_one_curve(
X,
y,
sampler,
score_model,
seed,
args.warmstart_size,
args.batch_size,
select_model,
confusion=c,
active_p=m,
max_points=max_dataset_size,
standardize_data=args.standardize_data,
norm_data=args.normalize_data,
train_horizon=args.train_horizon)
key = (args.dataset, args.sampling_method, args.score_method,
args.select_method, m, args.warmstart_size,
args.batch_size, c, args.standardize_data,
args.normalize_data, seed)
sampler_output = sampler_state.to_dict()
results["sampler_output"] = sampler_output
all_results[key] = results
# Not sure why this is done in a qay like this.
fields = [
"dataset", "sampler", "score_method", "select_method",
"active percentage", "warmstart size", "batch size", "confusion",
"standardize", "normalize", "seed"
]
all_results["tuple_keys"] = fields
# write the results to a file
if args.do_save:
# format the filename
filename = "results_score_{}_select_{}_norm_{}_stand_{}".format(
args.score_method, args.select_method, args.normalize_data,
args.standardize_data)
existing_files = gfile.Glob(
os.path.join(save_subdir, "{}*.pkl".format(filename)))
filepath = os.path.join(
save_subdir, "{}_{}.pkl".format(filename,
1000 + len(existing_files))[1:])
# dump the dict to a pickle file
pickle.dump(all_results, gfile.GFile(filepath, "w"))
# flush stfout
sys.stdout.flush_file()
def create_figures(self):
acc_samples = 0
results_dir = os.path.join('../models', args.model_name,
args.model_name + '_results')
make_dir(results_dir)
masks_dir = os.path.join(args.model_name + '_masks')
abs_masks_dir = os.path.join(results_dir, masks_dir)
make_dir(abs_masks_dir)
print "Creating annotations for cityscapes validation..."
for batch_idx, (inputs, targets) in enumerate(self.loader):
x, y_mask, y_class, sw_mask, sw_class = batch_to_var(
self.args, inputs, targets)
out_masks, out_scores, stop_probs = test(self.args, self.encoder,
self.decoder, x)
class_ids = [24, 25, 26, 27, 28, 31, 32, 33]
for sample in range(self.batch_size):
sample_idx = self.sample_list[sample + acc_samples]
image_dir = os.path.join(sample_idx.split('.')[0] + '.png')
im = scipy.misc.imread(image_dir)
h = im.shape[0]
w = im.shape[1]
sample_idx = sample_idx.split('/')[-1].split('.')[0]
results_file = open(
os.path.join(results_dir, sample_idx + '.txt'), 'w')
img_masks = out_masks[sample]
instance_id = 0
class_scores = out_scores[sample]
stop_scores = stop_probs[sample]
for time_step in range(self.T):
mask = img_masks[time_step].cpu().numpy()
mask = (mask > args.mask_th)
h_mask = mask.shape[0]
w_mask = mask.shape[1]
mask = (mask > 0)
labeled_blobs = measure.label(mask, background=0).flatten()
# find the biggest one
count = Counter(labeled_blobs)
s = []
max_num = 0
for v, k in count.iteritems():
if v == 0:
continue
if k > max_num:
max_num = k
max_label = v
# build mask from the largest connected component
segmentation = (labeled_blobs == max_label).astype("uint8")
mask = segmentation.reshape([h_mask, w_mask]) * 255
mask = scipy.misc.imresize(mask, [h, w])
class_scores_mask = class_scores[time_step].cpu().numpy()
stop_scores_mask = stop_scores[time_step].cpu().numpy()
class_score = np.argmax(class_scores_mask)
for i in range(len(class_scores_mask) - 1):
name_instance = sample_idx + '_' + str(
instance_id) + '.png'
pred_class_score = class_scores_mask[i + 1]
objectness = stop_scores_mask[0]
pred_class_score *= objectness
scipy.misc.imsave(
os.path.join(abs_masks_dir, name_instance), mask)
results_file.write(masks_dir + '/' + name_instance +
' ' + str(class_ids[i]) + ' ' +
str(pred_class_score) + '\n')
instance_id += 1
results_file.close()
acc_samples += self.batch_size
def save_seq_results(model_name, seq_name, prev_mask):
results_dir = os.path.join('../models', model_name,
'masks_sep_2assess_val', seq_name)
submission_dir = os.path.join('../models', model_name, 'Annotations',
seq_name)
make_dir(submission_dir)
json_data = open('../../databases/YouTubeVOS/val/meta.json')
data = json.load(json_data)
seq_data = data['videos'][seq_name]['objects']
prev_obj_ids = []
prev_assignment = []
images_dir = os.path.join('../../databases/YouTubeVOS/val/JPEGImages/',
seq_name)
image_names = os.listdir(images_dir)
image_names.sort()
starting_img_name = image_names[0]
starting_frame = int(starting_img_name[:-4])
frame_names = []
min_obj_id = 5
max_obj_id = 1
for obj_id in seq_data.keys():
if int(obj_id) < min_obj_id:
min_obj_id = int(obj_id)
if int(obj_id) > max_obj_id:
max_obj_id = int(obj_id)
for frame_name in seq_data[obj_id]['frames']:
if frame_name not in frame_names:
frame_names.append(frame_name)
frame_names.sort()
frame_idx = 0
obj_ids_sorted_increasing_jaccard = []
for frame_name in frame_names:
obj_ids = []
for obj_id in seq_data.keys():
if frame_name in seq_data[obj_id]['frames']:
obj_ids.append(int(obj_id))
if frame_idx == 0:
annotation = np.array(
Image.open('../../databases/YouTubeVOS/val/Annotations/' +
seq_name + '/' + frame_name + '.png'))
res_im = Image.fromarray(annotation, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
#compute assignment between predictions from first frame and ground truth from first frame
if prev_mask == True:
num_preds = max_obj_id - min_obj_id + 1
else:
num_preds = 10
cost = np.ones((max_obj_id - min_obj_id + 1, num_preds))
for obj_id in obj_ids:
annotation_obj = np.zeros(annotation.shape)
annotation_obj[annotation == obj_id] = 1
for pred_id in range(num_preds):
if prev_mask == True:
pred_mask = imread(results_dir + '/' + frame_name +
'_instance_%02d.png' % pred_id)
else:
pred_mask = imread(
results_dir + '/' + '%05d_instance_%02d.png' %
(starting_frame + frame_idx, pred_id))
pred_mask_resized = imresize(pred_mask,
annotation.shape,
interp='nearest')
cost[obj_id - min_obj_id, pred_id] = 1 - jaccard_simple(
annotation_obj, pred_mask_resized)
row_ind, col_ind = linear_sum_assignment(cost)
prev_assignment = col_ind
prev_obj_ids = obj_ids
cost_objs = {}
for obj_id in obj_ids:
cost_objs[obj_id] = cost[obj_id - min_obj_id,
prev_assignment[obj_id - min_obj_id]]
obj_ids_sorted_increasing_jaccard = sorted(cost_objs.items(),
key=lambda kv: kv[1],
reverse=True)
else:
new_elems = []
for obj_id in obj_ids:
if obj_id not in prev_obj_ids:
new_elems.append(obj_id)
pred_mask_resized = np.zeros(annotation.shape, dtype=np.uint8)
if len(new_elems) == 0:
for obj_id, jaccard_val in obj_ids_sorted_increasing_jaccard:
instance_assigned_id = prev_assignment[obj_id - min_obj_id]
if prev_mask == True:
pred_mask = imread(results_dir + '/' + frame_name +
'_instance_%02d.png' %
instance_assigned_id)
else:
pred_mask = imread(
results_dir + '/' + '%05d_instance_%02d.png' %
(starting_frame + frame_idx, instance_assigned_id))
pred_mask_resized_aux = imresize(pred_mask,
annotation.shape,
interp='nearest')
pred_mask_resized[pred_mask_resized_aux == 255] = obj_id
res_im = Image.fromarray(pred_mask_resized, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
else:
prev_cost_objs = cost_objs
cost_objs = {}
annotation = np.array(
Image.open('../../databases/YouTubeVOS/val/Annotations/' +
seq_name + '/' + frame_name + '.png'))
if prev_mask == True:
num_preds = max_obj_id - min_obj_id + 1
else:
num_preds = 10
cost = np.ones((max_obj_id - min_obj_id + 1, num_preds))
for obj_id in obj_ids:
if obj_id in prev_obj_ids:
cost[obj_id - min_obj_id,
prev_assignment[obj_id - min_obj_id]] = 0
else:
annotation_obj = np.zeros(annotation.shape)
annotation_obj[annotation == obj_id] = 1
for pred_id in range(num_preds):
if prev_mask == True:
pred_mask = imread(results_dir + '/' +
frame_name +
'_instance_%02d.png' %
pred_id)
else:
pred_mask = imread(
results_dir + '/' +
'%05d_instance_%02d.png' %
(starting_frame + frame_idx, pred_id))
pred_mask_resized = imresize(pred_mask,
annotation.shape,
interp='nearest')
cost[obj_id - min_obj_id,
pred_id] = 1 - jaccard_simple(
annotation_obj, pred_mask_resized)
row_ind, col_ind = linear_sum_assignment(cost)
prev_assignment = col_ind
for obj_id in obj_ids:
if obj_id in prev_obj_ids:
cost_objs[obj_id] = prev_cost_objs[obj_id]
else:
cost_objs[obj_id] = cost[obj_id - min_obj_id,
prev_assignment[obj_id -
min_obj_id]]
obj_ids_sorted_increasing_jaccard = sorted(
cost_objs.items(), key=lambda kv: kv[1], reverse=True)
pred_mask_resized = np.zeros(annotation.shape, dtype=np.uint8)
for obj_id, jaccard_val in obj_ids_sorted_increasing_jaccard:
if obj_id in prev_obj_ids:
instance_assigned_id = prev_assignment[obj_id -
min_obj_id]
if prev_mask == True:
pred_mask = imread(results_dir + '/' + frame_name +
'_instance_%02d.png' %
instance_assigned_id)
else:
pred_mask = imread(results_dir + '/' +
'%05d_instance_%02d.png' %
(starting_frame + frame_idx,
instance_assigned_id))
pred_mask_resized_aux = imresize(pred_mask,
annotation.shape,
interp='nearest')
pred_mask_resized[pred_mask_resized_aux ==
255] = obj_id
for obj_id in obj_ids:
if obj_id not in prev_obj_ids:
annotation_obj = np.zeros(annotation.shape)
annotation_obj[annotation == obj_id] = 255
pred_mask_resized[annotation_obj == 255] = obj_id
res_im = Image.fromarray(pred_mask_resized, mode="P")
res_im.putpalette(PALETTE)
res_im.save(submission_dir + '/' + frame_name + '.png')
prev_obj_ids = obj_ids
frame_idx = frame_idx + 1
def save_network(model, episode, out_dir):
out_dir = '{}/models'.format(out_dir)
# Make Dir
make_dir(out_dir)
# Save model
torch.save(model.state_dict(), '{}/episode_{}'.format(out_dir, episode))
assert (args.load_epoch is not None), 'Which epoch weights to load is not specified!'
outpath = args.load_modelPath
if torch.cuda.is_available():
encoder.load_state_dict(torch.load(f'{outpath}/weights_encoder/epoch_{args.load_epoch}_encoder_weights.pth'))
decoder.load_state_dict(torch.load(f'{outpath}/weights_decoder/epoch_{args.load_epoch}_decoder_weights.pth'))
else:
encoder.load_state_dict(torch.load(f'{outpath}/weights_encoder/epoch_{args.load_epoch}_encoder_weights.pth', map_location=torch.device('cpu')))
encoder.load_state_dict(torch.load(f'{outpath}/weights_decoder/epoch_{args.load_epoch}_decoder_weights.pth', map_location=torch.device('cpu')))
# Create new model
else:
outpath = f"{args.save_dir}/{gen_fname(args)}"
if args.customSuffix is not None:
outpath = f"{outpath}_{args.customSuffix}"
make_dir(outpath)
with open(f"{outpath}/args_cache.json", "w") as f:
json.dump(vars(args), f)
# Training
optimizer_encoder = torch.optim.Adam(encoder.parameters(), args.lr)
optimizer_decoder = torch.optim.Adam(decoder.parameters(), args.lr)
train_avg_losses, valid_avg_losses, train_dts, valid_dts = train_loop(args, encoder, decoder, train_loader, valid_loader,
optimizer_encoder, optimizer_decoder, outpath, device=device)
'''Plotting evaluation results'''
plot_eval_results(args, data=(train_avg_losses, valid_avg_losses), data_name="Losses", outpath=outpath)
plot_eval_results(args, data=(train_dts, valid_dts), data_name="Time durations", outpath=outpath)
plot_eval_results(args, data=[train_dts[i] + valid_dts[i] for i in range(len(train_dts))], data_name="Total time durations", outpath=outpath)
print("Completed!")
