def __init__(self, centre_sx_sy, grid_size_selector, sem, stage, ovm, acq,
img_inspector, viewport_trigger):
super().__init__()
loadUi('..\\gui\\stub_ov_dlg.ui', self)
self.setWindowModality(Qt.ApplicationModal)
self.setWindowIcon(QIcon('..\\img\\icon_16px.ico'))
self.setFixedSize(self.size())
self.show()
self.sem = sem
self.stage = stage
self.ovm = ovm
self.acq = acq
self.img_inspector = img_inspector
self.viewport_trigger = viewport_trigger
self.acq_in_progress = False
self.error_msg_from_acq_thread = ''
# Set up trigger and queue to update dialog GUI during acquisition
self.stub_dlg_trigger = utils.Trigger()
self.stub_dlg_trigger.signal.connect(self.process_thread_signal)
self.abort_queue = Queue()
self.pushButton_acquire.clicked.connect(self.start_stub_ov_acquisition)
self.pushButton_abort.clicked.connect(self.abort)
self.spinBox_X.setValue(centre_sx_sy[0])
self.spinBox_Y.setValue(centre_sx_sy[1])
self.grid_size_selector = grid_size_selector
self.durations = []
# Show available grid sizes and the corresponding estimated
# durations in min
tile_width = self.ovm['stub'].frame_size[0]
tile_height = self.ovm['stub'].frame_size[1]
overlap = self.ovm['stub'].overlap
pixel_size = self.ovm['stub'].pixel_size
cycle_time = self.ovm['stub'].tile_cycle_time()
motor_move_time = self.stage.stage_move_duration(
*self.ovm['stub'][0].sx_sy, *self.ovm['stub'][1].sx_sy)
self.grid_size_list = []
for grid_size in self.ovm['stub'].GRID_SIZE:
rows, cols = grid_size
width = int(
(cols * tile_width - (cols - 1) * overlap) * pixel_size / 1000)
height = int((rows * tile_height - (rows - 1) * overlap) *
pixel_size / 1000)
duration = int(
round(
(rows * cols * (cycle_time + motor_move_time) + 30) / 60))
self.grid_size_list.append(
str(width) + ' µm × ' + str(height) + ' µm')
self.durations.append('Up to ~' + str(duration) + ' min')
# Grid size selection
self.comboBox_sizeSelector.addItems(self.grid_size_list)
self.comboBox_sizeSelector.setCurrentIndex(self.grid_size_selector)
self.comboBox_sizeSelector.currentIndexChanged.connect(
self.update_duration)
self.label_duration.setText(self.durations[self.grid_size_selector])
self.previous_centre_sx_sy = self.ovm['stub'].centre_sx_sy
self.previous_grid_size_selector = self.ovm['stub'].grid_size_selector
def update_viewport_with_delay(self):
"""Redraw the viewport without suppressing labels/previews after at
least 0.3 seconds have passed since last update of the rotation angle."""
finish_trigger = utils.Trigger()
finish_trigger.signal.connect(self.draw_with_labels)
current_time = self.time_of_last_rotation
while (current_time - self.time_of_last_rotation < 0.3):
sleep(0.1)
current_time += 0.1
self.rotation_in_progress = False
finish_trigger.signal.emit()
def __init__(self, centre_sx_sy, sem, stage, ovm, acq, img_inspector,
viewport_trigger):
super().__init__()
loadUi('..\\gui\\stub_ov_dlg.ui', self)
self.setWindowModality(Qt.ApplicationModal)
self.setWindowIcon(QIcon('..\\img\\icon_16px.ico'))
self.setFixedSize(self.size())
self.show()
self.sem = sem
self.stage = stage
self.ovm = ovm
self.acq = acq
self.img_inspector = img_inspector
self.viewport_trigger = viewport_trigger
self.acq_in_progress = False
self.error_msg_from_acq_thread = ''
# Set up trigger and queue to update dialog GUI during acquisition
self.stub_dlg_trigger = utils.Trigger()
self.stub_dlg_trigger.signal.connect(self.process_thread_signal)
self.abort_queue = Queue()
self.pushButton_acquire.clicked.connect(self.start_stub_ov_acquisition)
self.pushButton_abort.clicked.connect(self.abort)
self.spinBox_X.setValue(centre_sx_sy[0])
self.spinBox_Y.setValue(centre_sx_sy[1])
self.spinBox_rows.setValue(ovm['stub'].size[0])
self.spinBox_cols.setValue(ovm['stub'].size[1])
self.spinBox_rows.valueChanged.connect(
self.update_dimension_and_duration_display)
self.spinBox_cols.valueChanged.connect(
self.update_dimension_and_duration_display)
self.update_dimension_and_duration_display()
# Save previous settings. If user aborts the stub OV acquisition
# revert to these settings.
self.previous_centre_sx_sy = self.ovm['stub'].centre_sx_sy
self.previous_grid_size = self.ovm['stub'].size