def request_dicom_files(input_file, output_file = None):
results = subprocess.check_output("dicom_tools/retrieve.sh %s@%s:%d %s" % (STAGE_AE,
STAGE_HOST, STAGE_PORT, input_file), stderr=subprocess.STDOUT, shell=True)
f = open(os.path.sep.join([run_dir, "pull_output.txt"]), "w")
f.write(results)
f.close()
overview.write("Received %d files containing %d studies\n" % dicom_count(os.path.sep.join([run_dir, "from_staging"])))
overview.flush()
os.fsync(overview.fileno())
def request_dicom_files(input_file, output_file=None):
results = subprocess.check_output(
"dicom_tools/retrieve.sh %s@%s:%d %s" %
(STAGE_AE, STAGE_HOST, STAGE_PORT, input_file),
stderr=subprocess.STDOUT,
shell=True)
f = open(os.path.sep.join([run_dir, "pull_output.txt"]), "w")
f.write(results)
f.close()
overview.write("Received %d files containing %d studies\n" %
dicom_count(os.path.sep.join([run_dir, "from_staging"])))
overview.flush()
os.fsync(overview.fileno())
def associate_to_existing_studies(run_dir, overview, practice):
additional = ""
if practice:
additional = " -p"
results = subprocess.check_output(
"python loadstudies.py%s -i identity.db -f %s -d %s" %
(additional, os.path.sep.join([run_dir, "no_encounter"]),
os.path.sep.join([run_dir, "to_production"])),
stderr=subprocess.STDOUT,
shell=True)
overview.write(
"%d files containing %d studies were successfully hooked up to an encounter.\n"
% dicom_count(os.path.sep.join([run_dir, "to_production"])))
return results
def associate_to_existing_studies(run_dir, overview, practice):
additional = ""
if practice:
additional = " -p"
results = subprocess.check_output("python loadstudies.py%s -i identity.db -f %s -d %s" % (additional, os.path.sep.join([run_dir,"no_encounter"]), os.path.sep.join([run_dir, "to_production"])),
stderr=subprocess.STDOUT, shell=True)
overview.write("%d files containing %d studies were successfully hooked up to an encounter.\n" % dicom_count(os.path.sep.join([run_dir, "to_production"])))
return results