def __preprocess_conf__(self, conf):
if not 'laneSlotUK' in conf:
if 'tag' in conf:
conf['laneSlotUK'] = make_unique_key(conf['tag'], conf['lane'].label)
else:
conf['laneSlotUK'] = make_unique_key(conf['lane'].label)
return assign_vid(conf)
def __update_constraints__(self):
st_code_uk = make_unique_key(self.study.id, self.studyCode)
setattr(self.ome_obj, 'stCodeUK',
self.to_omero(self.__fields__['stCodeUK'][0], st_code_uk))
st_ind_uk = make_unique_key(self.study.id, self.individual.id)
setattr(self.ome_obj, 'stIndUK',
self.to_omero(self.__fields__['stIndUK'][0], st_ind_uk))
def __update_constraints__(self):
csl_uk = make_unique_key(self.container.label, self.label)
setattr(self.ome_obj, 'containerSlotLabelUK',
self.to_omero(self.__fields__['containerSlotLabelUK'][0], csl_uk))
csi_uk = make_unique_key(self.container.label, '%04d' % self.slot)
setattr(self.ome_obj, 'containerSlotIndexUK',
self.to_omero(self.__fields__['containerSlotIndexUK'][0], csi_uk))
def __update_constraints__(self):
st_code_uk = make_unique_key(self.study.id, self.studyCode)
setattr(self.ome_obj, 'stCodeUK',
self.to_omero(self.__fields__['stCodeUK'][0], st_code_uk))
st_ind_uk = make_unique_key(self.study.id, self.individual.id)
setattr(self.ome_obj, 'stIndUK',
self.to_omero(self.__fields__['stIndUK'][0], st_ind_uk))
def __update_constraints__(self):
if self.tag:
ls_uk = make_unique_key(self.tag, self.lane.label)
setattr(self.ome_obj, 'laneSlotUK',
self.to_omero(self.__field__['laneSlotUK'][0], ls_uk))
else:
ls_uk = make_unique_key(self.lane.label)
setattr(self.ome_obj, 'laneSlotUK',
self.to_omero(self.__field__['laneSlotUK'][0], ls_uk))
def __preprocess_conf__(self, conf):
if not 'stCodeUK' in conf:
svid = conf['study'].vid
conf['stCodeUK'] = make_unique_key(svid, conf['studyCode'])
if not 'stIndUK' in conf:
svid = conf['study'].vid
ivid = conf['individual'].vid
conf['stIndUK'] = make_unique_key(svid, ivid)
return conf
def __preprocess_conf__(self, conf):
if not 'stCodeUK' in conf:
svid = conf['study'].vid
conf['stCodeUK'] = make_unique_key(svid, conf['studyCode'])
if not 'stIndUK' in conf:
svid = conf['study'].vid
ivid = conf['individual'].vid
conf['stIndUK'] = make_unique_key(svid, ivid)
return conf
def __preprocess_conf__(self, conf):
super(PlateWell, self).__preprocess_conf__(conf)
if not 'containerSlotLabelUK' in conf:
clabel = conf['container'].label
label = conf['label']
conf['containerSlotLabelUK'] = make_unique_key(clabel, label)
if not 'containerSlotIndexUK' in conf:
clabel = conf['container'].label
slot = conf['slot']
conf['containerSlotIndexUK'] = make_unique_key(clabel, '%04d' % slot)
return conf
def __preprocess_conf__(self, conf):
conf = assign_vid(conf)
if not "demogUK" in conf:
conf["demogUK"] = make_unique_key(
conf["name"], conf["surname"], conf["birthdate"], conf["gender"].omero_id, conf["birthPlace"].id
)
return conf
def __preprocess_conf__(self, conf):
if not 'label' in conf:
conf['label'] = '%s:%s' % (conf['flowCell'].label, conf['slot'])
if not 'laneUK' in conf:
conf['laneUK'] = make_unique_key(conf['flowCell'].label,
conf['slot'])
return super(Lane, self).__preprocess_conf__(conf)
def __preprocess_conf__(self, conf):
conf = assign_vid(conf)
if not 'demogUK' in conf:
conf['demogUK'] = make_unique_key(conf['name'], conf['surname'],
conf['birthdate'],
conf['gender'].omero_id,
conf['birthPlace'].id)
return conf
def __update_constraints__(self):
uk = make_unique_key(self.name, self.surname, self.birthdate, self.gender.omero_id, self.birthPlace.id)
seattr(self.ome_obj, "demogUK", self.to_omero(self.__fields__["demogUK"][0], uk))
def __preprocess_conf__(self, conf):
if not 'vesselsCollectionItemUK' in conf:
v_vid = conf['vessel'].id
vc_vid = conf['vesselsCollection'].id
conf['vesselsCollectionItemUK'] = make_unique_key(vc_vid, v_vid)
return assign_vid(conf)
def __update_constraints__(self):
l_uk = make_unique_key(self.flowCell.label, self.slot)
setattr(self.ome_obj, 'laneUK',
self.to_omero(self.__field__['laneUK'][0], l_uk))
def __update_contraints__(self):
vci_uk = make_unique_key(self.vesselsCollection.id, self.vessel.id)
setattr(self.ome_obj, 'vesselsCollectionItemUK',
self.to_omero(self.__fields__['vesselsCollectionItemUK'][0], vci_uk))
def __preprocess_conf__(self, conf):
if not 'dataCollectionItemUK' in conf:
dc_vid = conf['dataCollection'].id
ds_vid = conf['dataSample'].id
conf['dataCollectionItemUK'] = make_unique_key(dc_vid, ds_vid)
return assign_vid(conf)
def __update_constraints__(self):
l_uk = make_unique_key(self.flowCell.label, self.slot)
setattr(self.ome_obj, 'laneUK',
self.to_omero(self.__field__['laneUK'][0], l_uk))
def __update_constraints__(self):
dci_uk = make_unique_key(self.dataCollection.id, self.dataSample.id)
setattr(
self.ome_obj, 'dataCollectionItemUK',
self.to_omero(self.__fields__['dataCollectionItemUK'][0], dci_uk))
def __update_constraints__(self):
uk = make_unique_key(self.name, self.surname, self.birthdate,
self.gender.omero_id, self.birthPlace.id)
seattr(self.ome_obj, 'demogUK',
self.to_omero(self.__fields__['demogUK'][0], uk))
def __update_constraints__(self):
uk = make_unique_key(self.maker, self.model, self.release)
setattr(self.ome_obj, 'snpMarkersSetUK',
self.to_omero(self.__fields__['snpMarkersSetUK'][0], uk))
def __preprocess_conf__(self, conf):
if not 'snpMarkersSetUK' in conf:
conf['snpMarkersSetUK'] = make_unique_key(conf['maker'],
conf['model'],
conf['release'])
return conf
def __preprocess_conf__(self, conf):
if not 'label' in conf:
conf['label'] = '%s:%s' % (conf['flowCell'].label, conf['slot'])
if not 'laneUK' in conf:
conf['laneUK'] = make_unique_key(conf['flowCell'].label, conf['slot'])
return super(Lane, self).__preprocess_conf__(conf)
def __preprocess_conf__(self, conf):
if not 'snpMarkersSetUK' in conf:
conf['snpMarkersSetUK'] = make_unique_key(conf['maker'], conf['model'],
conf['release'])
return conf
def __preprocess_conf__(self, conf):
if not 'dataCollectionItemUK' in conf:
dc_vid = conf['dataCollection'].id
ds_vid = conf['dataSample'].id
conf['dataCollectionItemUK'] = make_unique_key(dc_vid, ds_vid)
return assign_vid(conf)
def __update_constraints__(self):
uk = make_unique_key(self.maker, self.model, self.release)
setattr(self.ome_obj, 'snpMarkersSetUK',
self.to_omero(self.__fields__['snpMarkersSetUK'][0], uk))
def __update_constraints__(self):
dci_uk = make_unique_key(self.dataCollection.id, self.dataSample.id)
setattr(self.ome_obj, 'dataCollectionItemUK',
self.to_omero(self.__fields__['dataCollectionItemUK'][0], dci_uk))