(max_depth, min_samples), {
'max_depth': max_depth,
'min_samples_leaf': min_samples
})
print
algo, options, name = best_classifier
print "Best overall: %s with %.5f" % (name, best_score)
# re-train best algo with whole training set
classifier = algo(**options)
classifier.fit(X, Y)
output_predictions(classifier, '04_submission.csv', formatting_functions,
features)
plot_learning_curve(name, algo, options, X, Y, min_size=50, n_steps=50)
print '=' * 100
print
# Random forests
best_score = 0.0
best_classifier = ()
test_algo(RandomForestClassifier, X, Y, "Random Forest with 10 trees")
test_algo(RandomForestClassifier, X, Y, "Random Forest with 50 trees",
{'n_estimators': 50})
test_algo(RandomForestClassifier, X, Y, "Random Forest with 100 trees",
{'n_estimators': 100})
test_algo(RandomForestClassifier, X, Y,
best_score = env.reward_range[0]
score_hist = []
env.render("rgb_array")
for i in range(n_game):
observation = env.reset()
done = False
score = 0
while not done:
action = agent1.action_choose(observation)
nw_observation, reward, done, _ = env.step(action)
score += reward
agent1.rem_transition(observation, action, reward, nw_observation,
done)
agent1.learning()
observation = nw_observation
score_hist.append(score)
avg_score = np.mean(score_hist[-100:])
if avg_score > best_score:
best_score = avg_score
agent1.model_save()
print('episode :', i, 'score %.1f :' % score,
'avg score %.1f :' % avg_score)
x = [i + 1 for i in range(n_game)]
plot_learning_curve(x, score_hist, fig_file, n_game)
win_pct_list = []
scores = []
eps_history = []
for i in range(n_episodes):
done = False
score = 0
s = env.reset()
done = False
while not done:
a = A.pick_action(s)
s_, r, done, info = env.step(a)
A.learn(s, a, r, s_)
score += r
s = s_
scores.append(score)
eps_history.append(A.eps)
if i % 100 == 0:
win_pct = np.mean(scores[-100:])
win_pct_list.append(win_pct)
if i % 1000 == 0:
print('episode', i, 'win pct %.2f' % win_pct, 'eps %2.f' % A.eps)
#plt.plot(win_pct_list)
#plt.show()
x = [i + 1 for i in range(n_episodes)]
plot_learning_curve(x, scores, eps_history)
scores = []
eps_history = []
agent = Agent(lr=0.0001,
input_dims=env.observation_space.shape,
n_actions=env.action_space.n)
for i in range(n_games):
score = 0
done = False
obs = env.reset()
while not done:
action = agent.choose_action(obs)
resulted_obs, reward, done, info = env.step(action)
score += reward
agent.learn(obs, action, reward, resulted_obs)
obs = resulted_obs
scores.append(score)
eps_history.append(agent.epsilon)
if i % 100 == 0:
avg_score = np.mean(scores[-100:])
print(
'episode', i, 'score: %.1f, avg_score: %.1f, eps: %.4f' %
(score, avg_score, agent.epsilon))
filename = "CartePole_DQN.png"
x = [i + 1 for i in range(n_games)]
plot_learning_curve(x, scores, eps_history, filename)
plot_roc_curve(n_classes, y_test_bin, y_score, filename)
"""Plot Decision Area"""
clf = ExtraTreesClassifier(n_estimators=ESTIMATORS,
max_features=0.42,
n_jobs=-1)
plot_decision_area(clf,
X_scaled[:, 2:4],
y,
title="Extra Trees Classifier",
filename=filename)
"""Plot Learning Curve"""
X_lc = X_scaled[:10000]
y_lc = y[:10000]
plot_learning_curve(clf,
"Extra Trees Classifier",
X_lc,
y_lc,
filename=filename)
"""Plot Validation Curve: max_depth"""
clf = ExtraTreesClassifier(n_estimators=ESTIMATORS, max_depth=8)
param_name = 'max_depth'
param_range = [1, 2, 4, 8, 16, 32, 100]
plot_validation_curve(clf,
X_lc,
y_lc,
param_name,
param_range,
scoring='roc_auc',
cv=n_classes,
filename=filename)
"""Plot Validation Curve: n_estimators"""
gamma=0.99,
input_dims=[8],
n_actions=4,
fc1_dims=2048,
fc2_dims=1536)
n_games = 2000
filename = 'ACTOR_CRITIC_' + 'lunar_lander_' + str(agent.fc1_dims) + \
'_fc1_dims_' + str(agent.fc2_dims) + '_fc2_dims_lr'\
+ str(agent.lr) + \
'_' + str(n_games) + 'games'
figure_file = 'plots/' + filename
scores = []
for i in range(n_games):
done = False
observation = env.reset()
score = 0
while not done:
action = agent.choose_action(observation)
observation_, reward, done, info = env.step(action)
score += reward
agent.learn(observation, reward, observation_, done)
observation = observation_
scores.append(score)
avg = np.mean(scores[-100:])
print('episode', i, 'score %.1f' % score, 'average %.1f' % avg)
x = [i + 1 for i in range(n_games)]
plot_learning_curve(x, scores, filename)
def worker(name, input_shape, n_actions, global_agent, global_icm,
optimizer, icm_optimizer, env_id, n_threads, icm=False):
T_MAX = 20
local_agent = ActorCritic(input_shape, n_actions)
if icm:
local_icm = ICM(input_shape, n_actions)
algo = 'ICM'
else:
intrinsic_reward = T.zeros(1)
algo = 'A3C'
memory = Memory()
env = gym.make(env_id)
t_steps, max_eps, episode, scores, avg_score = 0, 1000, 0, [], 0
while episode < max_eps:
obs = env.reset()
hx = T.zeros(1, 256)
score, done, ep_steps = 0, False, 0
while not done:
state = T.tensor([obs], dtype=T.float)
action, value, log_prob, hx = local_agent(state, hx)
obs_, reward, done, info = env.step(action)
t_steps += 1
ep_steps += 1
score += reward
reward = 0 # turn off extrinsic rewards
memory.remember(obs, action, reward, obs_, value, log_prob)
obs = obs_
if ep_steps % T_MAX == 0 or done:
states, actions, rewards, new_states, values, log_probs = \
memory.sample_memory()
if icm:
intrinsic_reward, L_I, L_F = \
local_icm.calc_loss(states, new_states, actions)
loss = local_agent.calc_loss(obs, hx, done, rewards, values,
log_probs, intrinsic_reward)
optimizer.zero_grad()
hx = hx.detach_()
if icm:
icm_optimizer.zero_grad()
(L_I + L_F).backward()
loss.backward()
T.nn.utils.clip_grad_norm_(local_agent.parameters(), 40)
for local_param, global_param in zip(
local_agent.parameters(),
global_agent.parameters()):
global_param._grad = local_param.grad
optimizer.step()
local_agent.load_state_dict(global_agent.state_dict())
if icm:
for local_param, global_param in zip(
local_icm.parameters(),
global_icm.parameters()):
global_param._grad = local_param.grad
icm_optimizer.step()
local_icm.load_state_dict(global_icm.state_dict())
memory.clear_memory()
if name == '1':
scores.append(score)
avg_score = np.mean(scores[-100:])
print('{} episode {} thread {} of {} steps {:.2f}M score {:.2f} '
'intrinsic_reward {:.2f} avg score (100) {:.1f}'.format(
algo, episode, name, n_threads,
t_steps/1e6, score,
T.sum(intrinsic_reward),
avg_score))
episode += 1
if name == '1':
x = [z for z in range(episode)]
fname = algo + '_CartPole_no_rewards.png'
plot_learning_curve(x, scores, fname)
# print(utils.mean_cross_score(rf, tfidf_uni_bigram_train, train_cats, # cv=5, n_jobs=-1, scoring=recall_scorer)) # utils.plot_learning_curve(rf, 'random forest f1 score', tfidf_uni_bigram_train, # train_cats, cv=5, n_jobs=-1, scorer=f1_scorer) # utils.plot_learning_curve(rf, 'random forest precision score', tfidf_uni_bigram_train, # train_cats, cv=5, n_jobs=-1, scorer=precision_scorer) # utils.plot_learning_curve(rf, 'random forest accuracy score', tfidf_uni_bigram_train, # train_cats, cv=5, n_jobs=-1, scorer=accuracy_scorer) # utils.plot_learning_curve(rf, 'random forest hamming loss', tfidf_uni_bigram_train, # train_cats, cv=5, n_jobs=-1, scorer=hamming_losser) # utils.plot_learning_curve(rf, 'random forest jaccard score', tfidf_uni_bigram_train, # train_cats, cv=5, n_jobs=-1, scorer=jaccard_scorer) utils.plot_learning_curve(rf, 'random forest matthews corr coef scorer', tfidf_uni_bigram_train, train_cats, cv=5, n_jobs=-1, scorer=matthews_corrcoef_scorer) utils.plot_learning_curve(rf, 'random forest recall score', tfidf_uni_bigram_train, train_cats, cv=5, n_jobs=-1, scorer=recall_scorer) def evaluate(): train_uni_bigram, test_uni_bigram, train_cats, test_cats = \ feature_vecs.do_uni_bigram() tfidf_uni_bigram_train = feature_vecs.tfidf_matrix(train_uni_bigram) tfidf_uni_bigram_test = feature_vecs.tfidf_matrix(test_uni_bigram) # tfidf_uni_bigram_train, tfidf_uni_bigram_test, train_cats, test_cats = feature_vecs.do_means_embeddings() rf = RandomForestClassifier(n_jobs=-1)
def train(self, env, rollouts, policy, params, use_hints=False):
rollout_time, update_time = AverageMeter(), AverageMeter() # Loggers
rewards, deck_avgs, av_ds = [], [], []
print("Training model with {} parameters...".format(policy.num_params))
'''
Training Loop
'''
train_start_time = time.time()
for j in range(params.num_updates):
## Initialization
avg_eps_reward = AverageMeter()
#minigrid resets the game after each rollout, we should either make rollout size big enough to reach endgame, or not
done = False
game_state, prev_obs = self.reset_game(env)
prev_obs = torch.tensor(prev_obs, dtype=torch.float32)
prev_eval = env.game.num_playable() #used to calculate reward
eps_reward = 0.
start_time = time.time()
deck_end_sizes = []
## Collect rollouts
for step in range(rollouts.rollout_size):
if done:
# # Store episode statistics
avg_eps_reward.update(eps_reward)
deck_end_sizes.append(len(env.game.state['drawpile']))
# Reset Environment
game_state, obs = self.reset_game(env)
obs = torch.tensor(obs, dtype=torch.float32)
prev_eval = env.game.num_playable(
) #used to calculate reward
eps_reward = 0.
else:
obs = prev_obs
#agent action
#action, log_prob = agents[state['current_player']].act(state)
curr_player = env.game.state['current_player']
original_legal_actions = env.game.state['legal_actions'][
curr_player]
legal_actions = original_legal_actions
if len(env.game.state['players']) <= 1:
hints_tensor = torch.zeros(33, dtype=torch.float32)
else:
next_player = curr_player + 1
next_player = next_player if next_player < env.game.num_players else 0
hints_tensor = torch.tensor(
env.game.state['hints'][next_player],
dtype=torch.float32)
if use_hints:
action, log_prob = policy.act(
obs, legal_actions,
hints_tensor) # 1-curr_player for 2 player game
else:
action, log_prob = policy.act(obs, legal_actions)
if original_legal_actions[int(action)]:
state, next_player = env.step(action)
obs = env.get_encoded_state()
if original_legal_actions[int(action)]:
#if our play reduces us by more than 5 playable cards, negatives reward, else positive
curr_eval = env.game.num_playable()
reward = (curr_eval - prev_eval) / 5 + 1
prev_eval = curr_eval
else:
reward = -20
done = env.game.is_over()
rollouts.insert(step, torch.tensor(
(done), dtype=torch.float32), action, log_prob,
torch.tensor((reward),
dtype=torch.float32), prev_obs,
torch.tensor(legal_actions), hints_tensor,
torch.tensor(obs, dtype=torch.float32))
if isinstance(policy, DuelDQN):
policy.total_t += 1
prev_obs = torch.tensor(obs, dtype=torch.float32)
eps_reward += reward
############################## TODO: YOUR CODE BELOW ###############################
### 4. Use the rollout buffer's function to compute the returns for all ###
### stored rollout steps. Discount factor is given in 'params' ###
### HINT: This requires just 1 line of code. ###
####################################################################################
rollouts.compute_returns(params.discount)
################################# END OF YOUR CODE #################################
rollout_done_time = time.time()
if use_hints:
policy.update(rollouts, use_hints)
else:
policy.update(rollouts)
update_done_time = time.time()
rollouts.reset()
## log metrics
rewards.append(avg_eps_reward.avg)
avg_deck_end_size = np.sum(deck_end_sizes) / len(deck_end_sizes)
deck_avgs.append(avg_deck_end_size)
rollout_time.update(rollout_done_time - start_time)
update_time.update(update_done_time - rollout_done_time)
av_ds.append(avg_deck_end_size)
print(
'it {}: avgR: {:.3f} -- rollout_time: {:.3f}sec -- update_time: {:.3f}sec'
.format(j, avg_eps_reward.avg, rollout_time.avg,
update_time.avg))
if (j + 1) % params.plotting_iters == 0 and j != 0:
plot_learning_curve(av_ds, j + 1)
# if j % self.params['plotting_iters'] == 0 and j != 0:
# plot_learning_curve(rewards, success_rate, params.num_updates)
# log_policy_rollout(policy, params['env_name'], pytorch_policy=True)
print('av deck size: {:.3f}, games_played: {}'.format(
avg_deck_end_size, len(deck_end_sizes)))
return rewards, deck_avgs
return {'rwd': reward_history, 'rwd_avg': reward_avg}
if __name__ == '__main__':
genv = gym.make('CartPole-v1')
obs_size = np.prod(list(genv.observation_space.shape))
print("obs_size:{}, obs_shape:{}".format(obs_size,
genv.observation_space.shape))
# init. TF session
tf_sess_config = {
'allow_soft_placement': True,
'intra_op_parallelism_threads': 8,
'inter_op_parallelism_threads': 4,
}
training = False
dqn = DQN_Policy("dqn_cartpole", genv, 0.99, 64, [32, 32], training,
tf_sess_config)
if training:
# dqn training
config = TrainConfig()
dqn.build()
reward_dict = dqn.train(config)
plot_learning_curve(os.path.join(dqn.figs_dir, 'dqn_train.png'),
reward_dict,
xlabel='step')
else:
dqn.build()
if dqn.load_checkpoint():
dqn.eval(5)
def question_1():
global input_shape, X_train, y_train_labels, y_train, X_test, y_test_labels, y_test
print(
"------------------------------------------------------------------------"
)
print("Baseline Model")
print(
"------------------------------------------------------------------------"
)
model1 = baseline_model(input_shape, num_classes)
loss_callback_1 = LossHistory((X_test, y_test))
model1.fit(X_train,
y_train,
batch_size=batch_size,
epochs=epochs,
verbose=1,
validation_data=(X_test, y_test),
callbacks=[loss_callback_1])
model1.save('model1.h5')
plot_learning_curve(
[loss_callback_1.train_indices, loss_callback_1.test_indices],
[loss_callback_1.train_losses, loss_callback_1.test_losses],
colors=['g-', 'm-'],
labels=['Train loss', 'Test loss'],
title="Loss evolution for Baseline Model",
path="../outputs/q1/plots/train_test_loss_baseline.png",
axlabels=["Iterations", "Loss"])
plot_learning_curve([loss_callback_1.test_indices],
[loss_callback_1.test_acc],
colors=['c-'],
labels=['Test Accuracy'],
title="Accuracy evolution for Baseline Model",
path="../outputs/q1/plots/test_acc_baseline.png",
axlabels=["Iterations", "Accuracy"])
print(
"------------------------------------------------------------------------"
)
print("2 conv layer model")
print(
"------------------------------------------------------------------------"
)
model2 = two_conv_layer_model(input_shape, num_classes)
loss_callback_2 = LossHistory((X_test, y_test))
model2.fit(X_train,
y_train,
batch_size=batch_size,
epochs=epochs,
verbose=1,
validation_data=(X_test, y_test),
callbacks=[loss_callback_2])
model2.save('model2.h5')
plot_learning_curve(
[loss_callback_2.train_indices, loss_callback_2.test_indices],
[loss_callback_2.train_losses, loss_callback_2.test_losses],
colors=['g-', 'm-'],
labels=['Train loss', 'Test loss'],
title="Loss evolution for 2 conv layered Model",
path="../outputs/q1/plots/train_test_loss_2_conv.png",
axlabels=["Iterations", "Loss"])
plot_learning_curve([loss_callback_1.test_indices],
[loss_callback_1.test_acc],
colors=['c-'],
labels=['Test Accuracy'],
title="Accuracy evolution for 2 conv layered Model",
path="../outputs/q1/plots/test_acc_2_conv.png",
axlabels=["Iterations", "Accuracy"])
print(
"------------------------------------------------------------------------"
)
print("2 conv layer + 1 hidden dense layer model")
print(
"------------------------------------------------------------------------"
)
model3 = two_conv_one_dense_layer_model(input_shape, num_classes)
loss_callback_3 = LossHistory((X_test, y_test))
model3.fit(X_train,
y_train,
batch_size=batch_size,
epochs=epochs,
verbose=1,
validation_data=(X_test, y_test),
callbacks=[loss_callback_3])
model3.save('model3.h5')
plot_learning_curve(
[loss_callback_3.train_indices, loss_callback_3.test_indices],
[loss_callback_3.train_losses, loss_callback_3.test_losses],
colors=['g-', 'm-'],
labels=['Train loss', 'Test loss'],
title="Loss evolution for 2 Conv + 1 Dense layer config",
path="../outputs/q1/plots/train_test_loss_2_conv_1_dense.png",
axlabels=["Iterations", "Loss"])
plot_learning_curve([loss_callback_3.test_indices],
[loss_callback_3.test_acc],
colors=['c-'],
labels=['Test Accuracy'],
title="Accuracy evolution for 2 conv + 1 dense config",
path="../outputs/q1/plots/test_acc_2_conv_1_dense.png",
axlabels=["Iterations", "Accuracy"])
ids = np.random.choice(X_test.shape[0], 20)
X_samples = X_train[ids]
pred_samples_1 = model1.predict(X_samples)
generate_image_outputs(X_samples,
np.argmax(pred_samples_1, axis=1),
path="../outputs/q1/predictions/baseline")
pred_samples_2 = model2.predict(X_samples)
generate_image_outputs(X_samples,
np.argmax(pred_samples_2, axis=1),
path="../outputs/q1/predictions/2_conv")
pred_samples_3 = model3.predict(X_samples)
generate_image_outputs(X_samples,
np.argmax(pred_samples_3, axis=1),
path="../outputs/q1/predictions/2_conv_1_dense")
def question_3():
global input_shape, X_train, y_train_labels, y_train, X_test, y_test_labels, y_test
model = load_model('model3.h5')
model.trainable = False
# Custom model that inputs 28 x 28 matrices and outputs logits (without softmax)
visualize_model = Model(inputs=model.input,
outputs=model.get_layer("logits").output)
for _label in range(0, num_classes):
print(
"------------------------------------------------------------------------"
)
print("Synthetic image visualization for label " + str(_label))
print(
"------------------------------------------------------------------------"
)
y_temp = [_label]
y_temp = to_categorical(y_temp, num_classes)
# Setting cost to be the respective output neurons
cost = visualize_model.output[:, _label]
# Gradient calculation for the cost
grad = K.mean(K.gradients(cost, visualize_model.input)[0], axis=0)
# Custom keras backend function that inputs the images and returns the cost and gradient
custom_iterate = K.function([model.input],
[visualize_model.output[:, _label], grad])
# Initializing a gaussian distribution centred around 128
X_init = np.random.normal(loc=128., scale=50., size=(1, 28, 28, 1))
X_init /= 255.
costs = []
iter_indices = []
# Batch wise gradient ascent for learning X_init
for i in range(num_iter):
cost, grads = custom_iterate([X_init])
sigma = (i + 1) * 4 / (num_iter + 0.5)
step_size = 1.0 / np.std(grads)
costs.append(cost[0])
iter_indices.append(i)
# Smoothening using a Gaussian filter
grads = gaussian_filter(grads, sigma)
# Gradient update
X_init = (1 - 0.0001) * X_init + step_size * np.array(grads)
line = ("Iteration " + str(i + 1).rjust(int(log10(num_iter) + 1)) +
"/" + str(num_iter) +
" complete. Cost: %0.10f " % cost[0])
print(line)
# Visualizing the input image
fig = plt.figure()
ax = fig.add_subplot(111)
ax.imshow(X_init.reshape(28, 28), interpolation='nearest', cmap="gray")
plt.savefig("../outputs/q3/visualizations/max_output_" + str(_label) +
".png")
plt.close()
plot_learning_curve(
[iter_indices], [costs],
colors=['b-'],
labels=['Cost'],
title="Cost evolution over optimization iterations",
path="../outputs/q3/plots/cost_output_" + str(_label) + ".png",
axlabels=["Iterations", "Cost"])
# Custom model that inputs 28 x 28 image matrices and outputs 2nd maxpooling layer
visualize_model = Model(inputs=model.input,
outputs=model.get_layer("maxpooling2").output)
for _id in range(15):
print(
"------------------------------------------------------------------------"
)
print("Synthetic image visualization for central neuron of filter " +
str(_id))
print(
"------------------------------------------------------------------------"
)
# Setting cost as the central neuron of maxpooling layer
# Since row size and column size (7, 7) is odd, we do row/2 and column/2
cost = visualize_model.output[:,
visualize_model.output.get_shape()[1] /
2,
visualize_model.output.get_shape()[2] /
2, _id]
grad = K.mean(K.gradients(cost, visualize_model.input)[0], axis=0)
custom_iterate = K.function([model.input], [cost, grad])
X_init = np.random.normal(loc=128., scale=50., size=(1, 28, 28, 1))
X_init /= 255.
# Batch wise gradient ascent for learning X_init
for i in range(num_iter):
cost, grads = custom_iterate([X_init])
sigma = (i + 1) * 4 / (num_iter + 0.5)
step_size = 1.0 / np.std(grads)
grads = gaussian_filter(grads, sigma)
# Gradient update
X_init = (1 - 0.0001) * X_init + step_size * np.array(grads)
line = ("Iteration " + str(i + 1).rjust(int(log10(num_iter) + 1)) +
"/" + str(num_iter) +
" complete. Cost: %0.10f " % cost[0])
print(line)
# Plotting X_init for each of the filter optimizations
fig = plt.figure()
ax = fig.add_subplot(111)
ax.imshow(X_init.reshape(28, 28), interpolation='nearest', cmap="gray")
plt.text(0.5,
0.05,
'Filter: ' + str(_id),
fontsize=28,
horizontalalignment='center',
verticalalignment='center',
transform=ax.transAxes,
color='white')
plt.savefig("../outputs/q3/visualizations/max_filter_" + str(_id) +
".png")
plt.close()
def question_2():
global input_shape, X_train, y_train_labels, y_train, X_test, y_test_labels, y_test
model3 = load_model('model3.h5')
model3.trainable = False
learning_rate = 0.01
validation_interval = 10
# Iterating over each of the 10 classes for generating adversarial examples
for _label in range(0, num_classes):
print(
"------------------------------------------------------------------------"
)
print("Adversarial examples for label " + str(_label))
print(
"------------------------------------------------------------------------"
)
# y_eval is a dummy matrix useful for evaluating categorical crossentropy loss
y_eval = to_categorical(np.full((batch_size, 1), _label, dtype=int),
num_classes=num_classes)
# y_fool is the duplicate label meant to fool the network and generate adversarial examples
y_fool = to_categorical(np.full((y_train_labels.shape[0], 1),
_label,
dtype=int),
num_classes=num_classes)
batch = get_iter_batch(X_test, y_fool, batch_size, num_iter)
# initializing a 28 x 28 matrix for noise
noise = np.zeros((1, 28, 28, 1))
# new functional model to add noise and predict output using existing trained model
input1 = Input(shape=(img_rows, img_cols, 1))
input2 = Input(shape=(img_rows, img_cols, 1))
sum_inp = keras.layers.add([input1, input2])
op = model3(sum_inp)
noise_model = Model(inputs=[input1, input2], outputs=op)
# calculating gradient
a_loss = K.categorical_crossentropy(noise_model.output, y_eval)
grad = K.gradients(a_loss, noise_model.input[1])[0]
grad = K.mean(normalize_tensor(grad), axis=0)
# custom keras backend function that takes in two inputs and yields noise output,
# loss and gradient
custom_iterate = K.function([input1, input2],
[noise_model.output, a_loss, grad])
train_indices, train_loss, test_indices, test_loss, test_acc = [], [], [], [], []
ctr = 0
# Batch wise manual gradient descent for learning adversarial noise
for _batch in batch:
X_actual, y_actual = _batch
output, loss, grads = custom_iterate([X_actual, noise])
# Validating at specific intervals
if (ctr % validation_interval == 0):
noise_test = np.zeros(X_test.shape) + noise[0]
preds_test = noise_model.predict([X_test, noise_test])
_test_acc = float(
np.where(np.argmax(preds_test, axis=1) == _label)
[0].shape[0]) / float(preds_test.shape[0])
_test_loss = np.mean(loss)
test_indices.append(ctr)
test_loss.append(_test_loss)
test_acc.append(_test_acc)
train_indices.append(ctr)
train_loss.append(np.mean(loss))
# Gradient update
noise = noise - learning_rate * np.array(grads)
line = (
"Iteration " + str(ctr + 1).rjust(int(log10(num_iter) + 1)) +
"/" + str(num_iter) +
" complete. Train Loss: %0.10f " % np.mean(loss))
print(line)
ctr = ctr + 1
noise_test = np.zeros(X_test.shape) + noise[0]
preds = noise_model.predict([X_test, noise_test])
print("Accuracy: " + str(
float(np.where(np.argmax(preds, axis=1) == _label)[0].shape[0]) /
float(preds.shape[0])))
# Visualizing each of the generated noises
fig = plt.figure()
ax = fig.add_subplot(111)
ax.imshow(noise.reshape(28, 28), interpolation='nearest', cmap="gray")
plt.savefig("../outputs/q2/visualizations/sample_" + str(_label) +
".png")
plt.close()
# Plotting loss and accuracy evolution
plot_learning_curve(
[train_indices, test_indices], [train_loss, test_loss],
colors=['c-', 'm-'],
labels=['Train loss', 'Test loss'],
title="Loss evolution for adversarial noise training",
path="../outputs/q2/plots/train_test_loss_adversarial_noise_" +
str(_label) + ".png",
axlabels=["Iterations", "Loss"])
plot_learning_curve(
[test_indices], [test_acc],
colors=['r-'],
labels=['Test Accuracy'],
title="Accuracy evolution for adversarial noise training",
path="../outputs/q2/plots/test_acc_adversarial_noise_" +
str(_label) + ".png",
axlabels=["Iterations", "Accuracy"])
# Predicting for a random set of 9 adversarial images
ids = np.random.choice(X_test.shape[0], 9)
X_samples = X_test[ids]
noise_sample = np.zeros(X_samples.shape) + noise[0]
pred_samples = noise_model.predict([X_samples, noise_sample])
actual_samples = model3.predict(X_samples)
generate_noisy_outputs(X_samples + noise_sample,
np.argmax(actual_samples, axis=1),
np.argmax(pred_samples, axis=1),
path="../outputs/q2/predictions/" + str(_label))
load_checkpoint = False
if load_checkpoint:
agent.load_models()
for i in range(n_games):
observation = env.reset()
done = False
score = 0
while not done:
action = agent.choose_action(observation)
observation_, reward, done, info = env.step(action)
score += reward
if not load_checkpoint:
agent.learn(observation, action, reward, observation_, done)
observation = observation_
score_history.append(score)
avg_score = np.mean(score_history[-100:])
if avg_score > best_score:
best_score = avg_score
if not load_checkpoint:
agent.save_models()
print('episode ', i, 'score %.1f' % score, 'avg_score %.1f' % avg_score)
if not load_checkpoint:
x = [i+1 for i in range(n_games)]
plot_learning_curve(x, score_history, figure_file)
learning_rate_decay_interval=250,
l2_reg_lambda=0.005,
momentum=0.9)
model_1.train(X_train,
y_train,
batch_size=64,
iterations=8000,
validation=True,
validation_data=(X_test, y_test),
validation_interval=200)
model_1.eval(X_test, y_test)
train_loss_sigmoid_1, test_loss_sigmoid_1 = model_1.loss_stats()
plot_learning_curve(
[train_loss_sigmoid_1[:, 0], test_loss_sigmoid_1[:, 0]],
[train_loss_sigmoid_1[:, 1], test_loss_sigmoid_1[:, 1]],
colors=['g-', 'b-'],
labels=['Train loss', 'Test loss'],
title="Loss evolution for Sigmoid activation; alpha = 1e-2",
path="../outputs/train_test_loss_sigmoid_1e-2.png")
print(
"------------------------------------------------------------------------"
)
print("MLP with Sigmoid activation; learning rate=1e-3; No scheduling")
print(
"------------------------------------------------------------------------"
)
model_2 = MLP([784, 1000, 500, 250, 10],
activation_types=["sigmoid", "sigmoid", "sigmoid", "linear"],
learning_rate=1e-3,
learning_rate_decay=1.00,
def train_model(model, optimizer, criterion, train_data_loader, valid_data_loader, test_data_loader, opt):
generator = SequenceGenerator(model,
eos_id=opt.word2id[pykp.io.EOS_WORD],
beam_size=opt.beam_size,
max_sequence_length=opt.max_sent_length
)
logging.info('====================== Checking GPU Availability =========================')
if torch.cuda.is_available():
if isinstance(opt.gpuid, int):
opt.gpuid = [opt.gpuid]
logging.info('Running on GPU! devices=%s' % str(opt.gpuid))
# model = nn.DataParallel(model, device_ids=opt.gpuid)
else:
logging.info('Running on CPU!')
logging.info('====================== Start Training =========================')
checkpoint_names = []
train_history_losses = []
valid_history_losses = []
test_history_losses = []
# best_loss = sys.float_info.max # for normal training/testing loss (likelihood)
best_loss = 0.0 # for f-score
stop_increasing = 0
train_losses = []
total_batch = 0
early_stop_flag = False
if opt.train_from:
state_path = opt.train_from.replace('.model', '.state')
logging.info('Loading training state from: %s' % state_path)
if os.path.exists(state_path):
(epoch, total_batch, best_loss, stop_increasing, checkpoint_names, train_history_losses, valid_history_losses,
test_history_losses) = torch.load(open(state_path, 'rb'))
opt.start_epoch = epoch
for epoch in range(opt.start_epoch , opt.epochs):
if early_stop_flag:
break
progbar = Progbar(title='Training', target=len(train_data_loader), batch_size=train_data_loader.batch_size,
total_examples=len(train_data_loader.dataset))
for batch_i, batch in enumerate(train_data_loader):
model.train()
batch_i += 1 # for the aesthetics of printing
total_batch += 1
one2many_batch, one2one_batch = batch
src, trg, trg_target, trg_copy_target, src_ext, oov_lists = one2one_batch
max_oov_number = max([len(oov) for oov in oov_lists])
print("src size - ",src.size())
print("target size - ",trg.size())
if torch.cuda.is_available():
src = src.cuda()
trg = trg.cuda()
trg_target = trg_target.cuda()
trg_copy_target = trg_copy_target.cuda()
src_ext = src_ext.cuda()
optimizer.zero_grad()
'''
Training with Maximum Likelihood (word-level error)
'''
decoder_log_probs, _, _ = model.forward(src, trg, src_ext, oov_lists)
# simply average losses of all the predicitons
# IMPORTANT, must use logits instead of probs to compute the loss, otherwise it's super super slow at the beginning (grads of probs are small)!
start_time = time.time()
if not opt.copy_model:
ml_loss = criterion(
decoder_log_probs.contiguous().view(-1, opt.vocab_size),
trg_target.contiguous().view(-1)
)
else:
ml_loss = criterion(
decoder_log_probs.contiguous().view(-1, opt.vocab_size + max_oov_number),
trg_copy_target.contiguous().view(-1)
)
'''
Training with Reinforcement Learning (instance-level reward f-score)
'''
src_list, trg_list, _, trg_copy_target_list, src_oov_map_list, oov_list, src_str_list, trg_str_list = one2many_batch
if torch.cuda.is_available():
src_list = src_list.cuda()
src_oov_map_list = src_oov_map_list.cuda()
rl_loss = get_loss_rl()
start_time = time.time()
ml_loss.backward()
print("--backward- %s seconds ---" % (time.time() - start_time))
if opt.max_grad_norm > 0:
pre_norm = torch.nn.utils.clip_grad_norm(model.parameters(), opt.max_grad_norm)
after_norm = (sum([p.grad.data.norm(2) ** 2 for p in model.parameters() if p.grad is not None])) ** (1.0 / 2)
logging.info('clip grad (%f -> %f)' % (pre_norm, after_norm))
optimizer.step()
train_losses.append(ml_loss.data[0])
progbar.update(epoch, batch_i, [('train_loss', ml_loss.data[0]), ('PPL', ml_loss.data[0])])
if batch_i > 1 and batch_i % opt.report_every == 0:
logging.info('====================== %d =========================' % (batch_i))
logging.info('Epoch : %d Minibatch : %d, Loss=%.5f' % (epoch, batch_i, np.mean(ml_loss.data[0])))
sampled_size = 2
logging.info('Printing predictions on %d sampled examples by greedy search' % sampled_size)
if torch.cuda.is_available():
src = src.data.cpu().numpy()
decoder_log_probs = decoder_log_probs.data.cpu().numpy()
max_words_pred = decoder_log_probs.argmax(axis=-1)
trg_target = trg_target.data.cpu().numpy()
trg_copy_target = trg_copy_target.data.cpu().numpy()
else:
src = src.data.numpy()
decoder_log_probs = decoder_log_probs.data.numpy()
max_words_pred = decoder_log_probs.argmax(axis=-1)
trg_target = trg_target.data.numpy()
trg_copy_target = trg_copy_target.data.numpy()
sampled_trg_idx = np.random.random_integers(low=0, high=len(trg) - 1, size=sampled_size)
src = src[sampled_trg_idx]
oov_lists = [oov_lists[i] for i in sampled_trg_idx]
max_words_pred = [max_words_pred[i] for i in sampled_trg_idx]
decoder_log_probs = decoder_log_probs[sampled_trg_idx]
if not opt.copy_model:
trg_target = [trg_target[i] for i in sampled_trg_idx] # use the real target trg_loss (the starting <BOS> has been removed and contains oov ground-truth)
else:
trg_target = [trg_copy_target[i] for i in sampled_trg_idx]
for i, (src_wi, pred_wi, trg_i, oov_i) in enumerate(zip(src, max_words_pred, trg_target, oov_lists)):
nll_prob = -np.sum([decoder_log_probs[i][l][pred_wi[l]] for l in range(len(trg_i))])
find_copy = np.any([x >= opt.vocab_size for x in src_wi])
has_copy = np.any([x >= opt.vocab_size for x in trg_i])
sentence_source = [opt.id2word[x] if x < opt.vocab_size else oov_i[x-opt.vocab_size] for x in src_wi]
sentence_pred = [opt.id2word[x] if x < opt.vocab_size else oov_i[x-opt.vocab_size] for x in pred_wi]
sentence_real = [opt.id2word[x] if x < opt.vocab_size else oov_i[x-opt.vocab_size] for x in trg_i]
sentence_source = sentence_source[:sentence_source.index('<pad>')] if '<pad>' in sentence_source else sentence_source
sentence_pred = sentence_pred[:sentence_pred.index('<pad>')] if '<pad>' in sentence_pred else sentence_pred
sentence_real = sentence_real[:sentence_real.index('<pad>')] if '<pad>' in sentence_real else sentence_real
logging.info('==================================================')
logging.info('Source: %s ' % (' '.join(sentence_source)))
logging.info('\t\tPred : %s (%.4f)' % (' '.join(sentence_pred), nll_prob) + (' [FIND COPY]' if find_copy else ''))
logging.info('\t\tReal : %s ' % (' '.join(sentence_real)) + (' [HAS COPY]' + str(trg_i) if has_copy else ''))
if total_batch > 1 and total_batch % opt.run_valid_every == 0:
logging.info('*' * 50)
logging.info('Run validing and testing @Epoch=%d,#(Total batch)=%d' % (epoch, total_batch))
# valid_losses = _valid_error(valid_data_loader, model, criterion, epoch, opt)
# valid_history_losses.append(valid_losses)
valid_score_dict = evaluate_beam_search(generator, valid_data_loader, opt, title='valid', epoch=epoch, save_path=opt.exp_path + '/epoch%d_batch%d_total_batch%d' % (epoch, batch_i, total_batch))
test_score_dict = evaluate_beam_search(generator, test_data_loader, opt, title='test', epoch=epoch, save_path=opt.exp_path + '/epoch%d_batch%d_total_batch%d' % (epoch, batch_i, total_batch))
checkpoint_names.append('epoch=%d-batch=%d-total_batch=%d' % (epoch, batch_i, total_batch))
train_history_losses.append(copy.copy(train_losses))
valid_history_losses.append(valid_score_dict)
test_history_losses.append(test_score_dict)
train_losses = []
scores = [train_history_losses]
curve_names = ['Training Error']
scores += [[result_dict[name] for result_dict in valid_history_losses] for name in opt.report_score_names]
curve_names += ['Valid-'+name for name in opt.report_score_names]
scores += [[result_dict[name] for result_dict in test_history_losses] for name in opt.report_score_names]
curve_names += ['Test-'+name for name in opt.report_score_names]
scores = [np.asarray(s) for s in scores]
# Plot the learning curve
plot_learning_curve(scores=scores,
curve_names=curve_names,
checkpoint_names=checkpoint_names,
title='Training Validation & Test',
save_path=opt.exp_path + '/[epoch=%d,batch=%d,total_batch=%d]train_valid_test_curve.png' % (epoch, batch_i, total_batch))
'''
determine if early stop training (whether f-score increased, before is if valid error decreased)
'''
valid_loss = np.average(valid_history_losses[-1][opt.report_score_names[0]])
is_best_loss = valid_loss > best_loss
rate_of_change = float(valid_loss - best_loss) / float(best_loss) if float(best_loss) > 0 else 0.0
# valid error doesn't increase
if rate_of_change <= 0:
stop_increasing += 1
else:
stop_increasing = 0
if is_best_loss:
logging.info('Validation: update best loss (%.4f --> %.4f), rate of change (ROC)=%.2f' % (
best_loss, valid_loss, rate_of_change * 100))
else:
logging.info('Validation: best loss is not updated for %d times (%.4f --> %.4f), rate of change (ROC)=%.2f' % (
stop_increasing, best_loss, valid_loss, rate_of_change * 100))
best_loss = max(valid_loss, best_loss)
# only store the checkpoints that make better validation performances
if total_batch > 1 and (total_batch % opt.save_model_every == 0 or is_best_loss): #epoch >= opt.start_checkpoint_at and
# Save the checkpoint
logging.info('Saving checkpoint to: %s' % os.path.join(opt.save_path, '%s.epoch=%d.batch=%d.total_batch=%d.error=%f' % (opt.exp, epoch, batch_i, total_batch, valid_loss) + '.model'))
torch.save(
model.state_dict(),
open(os.path.join(opt.save_path, '%s.epoch=%d.batch=%d.total_batch=%d' % (opt.exp, epoch, batch_i, total_batch) + '.model'), 'wb')
)
torch.save(
(epoch, total_batch, best_loss, stop_increasing, checkpoint_names, train_history_losses, valid_history_losses, test_history_losses),
open(os.path.join(opt.save_path, '%s.epoch=%d.batch=%d.total_batch=%d' % (opt.exp, epoch, batch_i, total_batch) + '.state'), 'wb')
)
if stop_increasing >= opt.early_stop_tolerance:
logging.info('Have not increased for %d epoches, early stop training' % stop_increasing)
early_stop_flag = True
break
logging.info('*' * 50)
def knn_diabetes():
# 加载数据集
data = pd.read_csv('./pima-indians-diabetes/diabetes.csv')
# print('dataset shape {}'.format(data.shape))
# print(data.head())
# print(data.groupby('Outcome').size())
# 处理数据集
X = data.iloc[:, :8]
Y = data.iloc[:, 8]
X_train, X_test, Y_train, Y_test = train_test_split(X, Y, test_size=0.2)
# print(X_train.shape, X_test.shape, Y_train.shape, Y_test.shape)
'''
# 模型比较
models = []
models.append(("KNN", KNeighborsClassifier(n_neighbors=2)))
models.append(("KNN with weights", KNeighborsClassifier(
n_neighbors=2, weights="distance")))
models.append(("Radius Neighbors", RadiusNeighborsClassifier(
n_neighbors=2, radius=500.0)))
results = []
for name, model in models:
kfold = KFold(n_splits=10)
cv_result = cross_val_score(model, X, Y, cv=kfold)
results.append((name, cv_result))
for i in range(len(results)):
print("name: {}; cross val score: {}".format(
results[i][0], results[i][1].mean()))
'''
# 模型训练及分析
# knn = KNeighborsClassifier(n_neighbors=2)
# knn.fit(X_train, Y_train)
# train_score = knn.score(X_train, Y_train)
# test_score = knn.score(X_test, Y_test)
# print("train score: {}\ntest score: {}".format(train_score, test_score))
knn = KNeighborsClassifier(n_neighbors=2)
cv = ShuffleSplit(n_splits=10, test_size=0.2, random_state=0)
plt.figure(figsize=(10, 6))
plot_learning_curve(plt,
knn,
"Learn Curve for KNN Diabetes",
X,
Y,
ylim=(0.0, 1.01),
cv=cv)
plt.show()
# 特征选择及数据可视化
selector = SelectKBest(k=2)
X_new = selector.fit_transform(X, Y)
print('X_new.shape {}'.format(X_new.shape))
plt.figure(figsize=(10, 6))
plt.ylabel("BMI")
plt.xlabel("Glucose")
plt.scatter(X_new[Y == 0][:, 0],
X_new[Y == 0][:, 1],
c='r',
s=20,
marker='o')
#画出样本
plt.scatter(X_new[Y == 1][:, 0],
X_new[Y == 1][:, 1],
c='g',
s=20,
marker='^')
#画出样本
plt.show()
# env_name=Env(), # we are using a tiny environment here for testing
)
NUM_OF_PLAYERS = 1
config = {
'num_players': NUM_OF_PLAYERS,
'log_filename': './logs/policy_agent.log',
'static_drawpile': False,
}
logging.basicConfig(filename=config['log_filename'],
filemode='w',
level=logging.INFO)
env = Env(config)
rollouts, dueling_dqn = instantiate(params)
trainer = Trainer()
rewards, deck_ends = trainer.train(env, rollouts, dueling_dqn, params)
print("Training completed!")
torch.save(dueling_dqn.Q.state_dict(), './models/duelingDQN.pt')
evaluations = []
num_iter = 50
for i in range(num_iter): # lets play 50 games
env.run_PG(dueling_dqn)
evaluations.append(env.get_num_cards_in_drawpile())
print('GAME OVER!')
plot_learning_curve(deck_ends, params.num_updates)
plot_testing(evaluations, num_iter)
x_train_pca, x_test_pca = utils.pca(x_train, x_test,
featrue_preserve_radio)
'''x_train_pca, x_test_pca = utils.pca_with_model(pca_model_name='pca_model.sav',
scaler_model_name='scaler_model.sav',
x_train=x_train, x_test=x_test)'''
clf = SVC(kernel='rbf', gamma=0.0005, C=1)
tic = time.time()
clf.fit(x_train_pca, y_train)
toc = time.time()
score = clf.score(x_test_pca, y_test)
print("train time: " + str(1000 * (toc - tic)) + "ms")
print("score: {:.6f}".format(score))
y_pred = clf.predict(x_test_pca)
print(confusion_matrix(y_test, y_pred))
print(classification_report(y_test, y_pred,
target_names=utils.label_names))
# save model
pickle.dump(clf, open('svm_model.sav', 'wb'))
# plot learning curve
train_sizes, train_scores, test_scores = learning_curve(
estimator=clf,
X=x_train_pca,
y=y_train,
train_sizes=np.linspace(0.1, 1.0, 10),
cv=4,
n_jobs=4)
utils.plot_learning_curve(train_sizes, train_scores, test_scores)
def train(self,
save_dir='./tmp',
transfer_dir=None,
details=False,
verbose=True,
show_each_step=False,
show_percentage=True,
**kwargs):
train_size = self.train_set.num_examples
num_steps_per_epoch = np.ceil(train_size / self.batch_size).astype(int)
self.steps_per_epoch = num_steps_per_epoch
num_steps = num_steps_per_epoch * self.num_epochs
self.total_steps = num_steps
validation_frequency = kwargs.get('validation_frequency', None)
summary_frequency = kwargs.get('summary_frequency', None)
if validation_frequency is None:
validation_frequency = num_steps_per_epoch
if summary_frequency is None:
summary_frequency = num_steps_per_epoch
num_validations = num_steps // validation_frequency
last_val_iter = num_validations * validation_frequency
if transfer_dir is not None: # Transfer learning setup
model_to_load = kwargs.get('model_to_load', None)
blocks_to_load = kwargs.get('blocks_to_load', None)
load_moving_average = kwargs.get('load_moving_average', False)
start_epoch = kwargs.get('start_epoch', 0)
start_step = num_steps_per_epoch * start_epoch
if not os.path.isdir(transfer_dir):
ckpt_to_load = transfer_dir
elif model_to_load is None: # Find a model to be transferred
ckpt_to_load = tf.train.latest_checkpoint(transfer_dir)
elif isinstance(model_to_load, str):
ckpt_to_load = os.path.join(transfer_dir, model_to_load)
else:
fp = open(os.path.join(transfer_dir, 'checkpoints.txt'), 'r')
ckpt_list = fp.readlines()
fp.close()
ckpt_to_load = os.path.join(transfer_dir,
ckpt_list[model_to_load].rstrip())
reader = pywrap_tensorflow.NewCheckpointReader(
ckpt_to_load) # Find variables to be transferred
var_to_shape_map = reader.get_variable_to_shape_map()
var_names = [var for var in var_to_shape_map.keys()]
var_list = []
if blocks_to_load is None:
for blk in self.model.block_list:
var_list += self.model.get_collection(
'block_{}/variables'.format(blk))
var_list += self.model.get_collection(
'block_{}/ema_variables'.format(blk))
else:
for blk in blocks_to_load:
var_list += self.model.get_collection(
'block_{}/variables'.format(blk))
var_list += self.model.get_collection(
'block_{}/ema_variables'.format(blk))
variables_not_loaded = []
if load_moving_average:
variables = {}
for var in var_list:
var_name = var.name.rstrip(':0')
ema_name = var.name.rstrip(
':0') + '/ExponentialMovingAverage'
if ema_name in var_to_shape_map:
if var.get_shape() == var_to_shape_map[ema_name]:
variables[ema_name] = var
if var_name in var_names:
var_names.remove(ema_name)
else:
print('<{}> was not loaded due to shape mismatch'.
format(var_name))
variables_not_loaded.append(var_name)
elif var_name in var_to_shape_map:
if var.get_shape() == var_to_shape_map[var_name]:
variables[var_name] = var
if var_name in var_names:
var_names.remove(var_name)
else:
print('<{}> was not loaded due to shape mismatch'.
format(var_name))
variables_not_loaded.append(var_name)
else:
variables_not_loaded.append(var_name)
else:
variables = []
for var in var_list:
var_name = var.name.rstrip(':0')
if var_name in var_to_shape_map:
if var.get_shape() == var_to_shape_map[var_name]:
variables.append(var)
var_names.remove(var_name)
else:
print('<{}> was not loaded due to shape mismatch'.
format(var_name))
variables_not_loaded.append(var_name)
else:
variables_not_loaded.append(var_name)
saver_transfer = tf.train.Saver(variables)
self.model.session.run(tf.global_variables_initializer())
saver_transfer.restore(self.model.session, ckpt_to_load)
if verbose:
print('')
print(
'Variables have been initialized using the following checkpoint:'
)
print(ckpt_to_load)
print(
'The following variables in the checkpoint were not used:')
print(var_names)
print(
'The following variables do not exist in the checkpoint, so they were initialized randomly:'
)
print(variables_not_loaded)
print('')
pkl_file = os.path.join(transfer_dir,
'learning_curve-result-1.pkl')
pkl_loaded = False
if os.path.exists(pkl_file):
train_steps = start_step if show_each_step else start_step // validation_frequency
eval_steps = start_step // validation_frequency
with open(pkl_file, 'rb') as fo:
prev_results = pkl.load(fo)
prev_results[0] = prev_results[0][:train_steps]
prev_results[1] = prev_results[1][:train_steps]
prev_results[2] = prev_results[2][:eval_steps]
prev_results[3] = prev_results[3][:eval_steps]
train_len = len(prev_results[0])
eval_len = len(prev_results[2])
if train_len == train_steps and eval_len == eval_steps:
train_losses, train_scores, eval_losses, eval_scores = prev_results
pkl_loaded = True
else:
train_losses, train_scores, eval_losses, eval_scores = [], [], [], []
else:
train_losses, train_scores, eval_losses, eval_scores = [], [], [], []
else:
start_epoch = 0
start_step = 0
self.model.session.run(tf.global_variables_initializer())
train_losses, train_scores, eval_losses, eval_scores = [], [], [], []
pkl_loaded = False
max_to_keep = kwargs.get('max_to_keep', 5)
log_trace = kwargs.get('log_trace', False)
saver = tf.train.Saver(max_to_keep=max_to_keep)
saver.export_meta_graph(
filename=os.path.join(save_dir, 'model.ckpt.meta'))
kwargs[
'monte_carlo'] = False # Turn off monte carlo dropout for validation
with tf.device('/cpu:{}'.format(self.model.cpu_offset)):
with tf.variable_scope('summaries'): # TensorBoard summaries
tf.summary.scalar('Loss', self.model.loss)
tf.summary.scalar('Learning Rate', self.learning_rate)
for i, val in enumerate(self.model.debug_values):
tf.summary.scalar('Debug_{}-{}'.format(i, val.name), val)
tf.summary.image('Input Images',
tf.cast(self.model.input_images * 255,
dtype=tf.uint8),
max_outputs=4)
tf.summary.image('Augmented Input Images',
tf.cast(self.model.X_all * 255,
dtype=tf.uint8),
max_outputs=4)
for i, img in enumerate(self.model.debug_images):
tf.summary.image('Debug_{}-{}'.format(i, img.name),
tf.cast(img * 255, dtype=tf.uint8),
max_outputs=4)
tf.summary.histogram('Image Histogram', self.model.X_all)
for blk in self.model.block_list:
weights = self.model.get_collection(
'block_{}/weight_variables'.format(blk))
if len(weights) > 0:
tf.summary.histogram(
'Block {} Weight Histogram'.format(blk),
weights[0])
weights = self.model.get_collection('weight_variables')
with tf.variable_scope('weights_l1'):
weights_l1 = tf.math.accumulate_n(
[tf.reduce_sum(tf.math.abs(w)) for w in weights])
tf.summary.scalar('Weights L1 Norm', weights_l1)
with tf.variable_scope('weights_l2'):
weights_l2 = tf.global_norm(weights)
tf.summary.scalar('Weights L2 Norm', weights_l2)
tail_scores_5 = []
tail_scores_1 = []
with tf.variable_scope('weights_tail_score'):
for w in weights:
w_size = tf.size(w, out_type=tf.float32)
w_std = tf.math.reduce_std(w)
w_abs = tf.math.abs(w)
tail_threshold_5 = 1.96 * w_std
tail_threshold_1 = 2.58 * w_std
num_weights_5 = tf.math.reduce_sum(
tf.cast(tf.math.greater(w_abs, tail_threshold_5),
dtype=tf.float32))
num_weights_1 = tf.math.reduce_sum(
tf.cast(tf.math.greater(w_abs, tail_threshold_1),
dtype=tf.float32))
tail_scores_5.append(num_weights_5 / (0.05 * w_size))
tail_scores_1.append(num_weights_1 / (0.01 * w_size))
tail_score_5 = tf.math.accumulate_n(tail_scores_5) / len(
tail_scores_5)
tail_score_1 = tf.math.accumulate_n(tail_scores_1) / len(
tail_scores_1)
tf.summary.scalar('Weights Tail Score 5p', tail_score_5)
tf.summary.scalar('Weights Tail Score 1p', tail_score_1)
with tf.variable_scope('gradients_l2'):
gradients_l2 = tf.global_norm(self.avg_grads)
tf.summary.scalar('Gradients L2 Norm', gradients_l2)
merged = tf.summary.merge_all()
train_writer = tf.summary.FileWriter(
os.path.join(save_dir, 'logs'), self.model.session.graph)
train_results = dict()
if verbose:
print('Running training loop...')
print('Batch size: {}'.format(self.batch_size))
print('Number of epochs: {}'.format(self.num_epochs))
print('Number of training iterations: {}'.format(num_steps))
print('Number of iterations per epoch: {}'.format(
num_steps_per_epoch))
if show_each_step:
step_losses, step_scores = [], []
else:
step_losses, step_scores = 0, 0
eval_loss, eval_score = np.inf, 0
annotations = []
self.train_set.initialize(
self.model.session) # Initialize training iterator
handles = self.train_set.get_string_handles(
self.model.session) # Get a string handle from training iterator
# if self.val_set is not None:
# self.val_set.initialize(self.model.session) # Initialize validation iterator
with tf.variable_scope('calc/'):
step_init_op = self.model.global_step.assign(
start_step, name='init_global_step')
self.model.session.run([step_init_op] + self.model.init_ops)
tf.get_default_graph().finalize()
# self._test_drive(save_dir=save_dir) # Run test code
self.curr_epoch += start_epoch
self.curr_step += start_step
step_loss, step_score = 0, 0
start_time = time.time()
for i in range(num_steps - start_step): # Training iterations
self._update_learning_rate()
try:
step_loss, step_Y_true, step_Y_pred = self._step(
handles,
merged=merged,
writer=train_writer,
summary=i % summary_frequency == 0,
log_trace=log_trace and i % summary_frequency == 1)
step_score = self.evaluator.score(step_Y_true, step_Y_pred)
except tf.errors.OutOfRangeError:
if verbose:
remainder_size = train_size - (self.steps_per_epoch -
1) * self.batch_size
print(
'The last iteration ({} data) has been ignored'.format(
remainder_size))
if show_each_step:
step_losses.append(step_loss)
step_scores.append(step_score)
else:
step_losses += step_loss
step_scores += step_score
self.curr_step += 1
if (
i + 1
) % validation_frequency == 0: # Validation every validation_frequency iterations
if self.val_set is not None:
_, eval_Y_true, eval_Y_pred, eval_loss = self.model.predict(
self.val_set,
verbose=False,
return_images=False,
run_init_ops=False,
**kwargs)
eval_score = self.evaluator.score(eval_Y_true, eval_Y_pred)
eval_scores.append(eval_score)
eval_losses.append(eval_loss)
del eval_Y_true, eval_Y_pred
curr_score = eval_score
self.model.save_results(self.val_set,
os.path.join(save_dir, 'results'),
self.curr_epoch,
max_examples=kwargs.get(
'num_examples_to_save', None),
**kwargs)
else:
curr_score = np.mean(
step_scores
) if show_each_step else step_scores / validation_frequency
if self.evaluator.is_better(curr_score, self.best_score,
**kwargs): # Save best model
self.best_score = curr_score
saver.save(self.model.session,
os.path.join(save_dir, 'model.ckpt'),
global_step=self.model.global_step,
write_meta_graph=False)
if show_each_step:
annotations.append((self.curr_step, curr_score))
else:
annotations.append(
(self.curr_step // validation_frequency,
curr_score))
annotations = annotations[-max_to_keep:]
elif self.curr_step == last_val_iter: # Save latest model
saver.save(self.model.session,
os.path.join(save_dir, 'model.ckpt'),
global_step=self.model.global_step,
write_meta_graph=False)
if show_each_step:
annotations.append((self.curr_step, curr_score))
else:
annotations.append(
(self.curr_step // validation_frequency,
curr_score))
annotations = annotations[-max_to_keep:]
ckpt_list = saver.last_checkpoints[::-1]
fp = open(os.path.join(save_dir, 'checkpoints.txt'), 'w')
for fname in ckpt_list:
fp.write(fname.split(os.sep)[-1] + '\n')
fp.close()
if show_each_step:
train_losses += step_losses
train_scores += step_scores
step_losses, step_scores = [], []
else:
step_loss = step_losses / validation_frequency
step_score = step_scores / validation_frequency
train_losses.append(step_loss)
train_scores.append(step_score)
step_losses, step_scores = 0, 0
if (
i + 1
) % num_steps_per_epoch == 0: # Print and plot results every epoch
self.train_set.initialize(
self.model.session
) # Initialize training iterator every epoch
if show_each_step:
val_freq = validation_frequency
start = 0 if pkl_loaded else start_step
else:
val_freq = 1
start = 0 if pkl_loaded else start_epoch
if self.val_set is not None:
if verbose:
if show_percentage:
print(
'[epoch {}/{}]\tTrain loss: {:.5f} |Train score: {:2.3%} '
'|Eval loss: {:.5f} |Eval score: {:2.3%} |LR: {:.7f} '
'|Elapsed time: {:5.0f} sec'.format(
self.curr_epoch, self.num_epochs,
step_loss, step_score, eval_loss,
eval_score, self.init_learning_rate *
self.curr_multiplier,
time.time() - start_time))
else:
print(
'[epoch {}/{}]\tTrain loss: {:.5f} |Train score: {:.5f} '
'|Eval loss: {:.5f} |Eval score: {:.5f} |LR: {:.7f} '
'|Elapsed time: {:5.0f} sec'.format(
self.curr_epoch, self.num_epochs,
step_loss, step_score, eval_loss,
eval_score, self.init_learning_rate *
self.curr_multiplier,
time.time() - start_time))
if len(eval_losses) > 0:
if self.model.num_classes is None:
loss_thres = min(eval_losses) * 2
else:
if self.model.num_classes > 1:
loss_thres = max([
2 * np.log(self.model.num_classes),
min(eval_losses) * 2
])
else:
loss_thres = min(eval_losses) * 2
plot_learning_curve(train_losses,
train_scores,
eval_losses=eval_losses,
eval_scores=eval_scores,
name=self.evaluator.name,
loss_threshold=loss_thres,
mode=self.evaluator.mode,
img_dir=save_dir,
annotations=annotations,
start_step=start,
validation_frequency=val_freq)
else:
if verbose:
if show_percentage:
print(
'[epoch {}/{}]\tTrain loss: {:.5f} |Train score: {:2.3%} |LR: {:.7f} '
'|Elapsed time: {:5.0f} sec'.format(
self.curr_epoch, self.num_epochs,
step_loss, step_score,
self.init_learning_rate *
self.curr_multiplier,
time.time() - start_time))
else:
print(
'[epoch {}/{}]\tTrain loss: {:.5f} |Train score: {:.5f} |LR: {:.7f} '
'|Elapsed time: {:5.0f} sec'.format(
self.curr_epoch, self.num_epochs,
step_loss, step_score,
self.init_learning_rate *
self.curr_multiplier,
time.time() - start_time))
if self.model.num_classes is None:
loss_thres = min(train_losses) * 2
else:
if self.model.num_classes > 1:
loss_thres = max([
2 * np.log(self.model.num_classes),
min(train_losses) * 2
])
else:
loss_thres = min(train_losses) * 2
plot_learning_curve(train_losses,
train_scores,
eval_losses=None,
eval_scores=None,
name=self.evaluator.name,
loss_threshold=loss_thres,
mode=self.evaluator.mode,
img_dir=save_dir,
annotations=annotations,
start_step=start,
validation_frequency=val_freq)
self.curr_epoch += 1
plt.close()
train_writer.close()
if verbose:
print('Total training time: {:.2f} sec'.format(time.time() -
start_time))
print('Best {} {}: {:.4f}'.format(
'evaluation' if self.val_set is not None else 'training',
self.evaluator.name, self.best_score))
print('Done.')
if details:
train_results['step_losses'] = step_losses
train_results['step_scores'] = step_scores
if self.val_set is not None:
train_results['eval_losses'] = eval_losses
train_results['eval_scores'] = eval_scores
return train_results
## HEART - SEP. TARGET AND FEATURES
heart_x = heart.iloc[:,:-1].values
heart_y = heart.iloc[:,-1].values
## ABALONE - SEP. TARGET AND FEATURES
abalone_x = abalone.drop('target',axis=1).values
scaler = StandardScaler()
abalone_x = scaler.fit_transform(abalone_x)
abalone_y = abalone['target'].values
data_all = [(abalone_x, abalone_y), (heart_x, heart_y)]
plot_learning_curve(estimator=abalone_dt,
title='DT Learning Curve - Abalone',
X = abalone_x,
y = abalone_y,
cv = 3,
train_sizes = np.linspace(0.15, 1.0, 5),
n_jobs = -1,
save_as = 'abalone_dt_lc',
scoring = 'roc_auc')
plot_learning_curve(estimator = heart_dt,
title = 'DT Learning Curve - Heart',
X = heart_x,
y = heart_y,
train_sizes = np.linspace(0.15, 1.0, 5),
cv = 3,
n_jobs = -1,
save_as = 'heart_dt_lc',
scoring = 'roc_auc'
)
def train(self,
n_episodes=500,
annealing_episodes=450,
every_episode=10,
**kwargs):
if self.training is False:
raise Exception(
'prohibited to call train() for a non-training model')
reward_history = [0.0]
reward_averaged = []
lr = self.lr
eps = self.epsilon
annealing_episodes = annealing_episodes or n_episodes
eps_drop = (self.epsilon - self.epsilon_final) / annealing_episodes
print "eps_drop: {}".format(eps_drop)
step = 0
# calling the property method of BaseTFModel to start a session
self.sess.run(self.init_vars)
self.__init_target_q_net()
for n_episode in range(n_episodes):
ob = self.env.reset()
done = False
traj = []
reward = 0.
while not done:
a = self.act(ob, eps)
assert a >= 0
new_ob, r, done, _ = self.env.step(a)
step += 1
reward += r
traj.append(Transition(ob, a, r, new_ob, done))
ob = new_ob
# No enough samples in the buffer yet.
if self.memory.size < self.batch_size:
continue
# Training with a mini batch of samples
batch_data = self.memory.sample(self.batch_size)
feed_dict = {
self.learning_rate: lr,
self.states: batch_data['s'],
self.actions: batch_data['a'],
self.rewards: batch_data['r'],
self.states_next: batch_data['s_next'],
self.done_flags: batch_data['done']
}
if self.double_q:
actions_next = self.sess.run(
self.actions_selected_by_q,
{self.states: batch_data['s_next']})
feed_dict.update({self.actions_next: actions_next})
_, q_val, q_target_val, loss, summ_str = self.sess.run(
[
self.optimizer, self.q, self.q_target, self.loss,
self.merged_summary
],
feed_dict=feed_dict)
self.writer.add_summary(summ_str, step)
# update the target q net if necessary
self.__update_target_q_net(step)
self.memory.add(traj)
reward_history.append(reward)
reward_averaged.append(np.mean(reward_history[-10:]))
# Annealing the learning and exploration rate after every episode
lr *= self.lr_decay
if eps > self.epsilon_final:
eps -= eps_drop
if reward_history and every_episode and n_episode % every_episode == 0:
print "[episodes: {}/step: {}], best: {}, avg: {:.2f}:{}, lr: {:.4f}, eps: {:.4f}".format(
n_episode, step, np.max(reward_history),
np.mean(reward_history[-10:]), reward_history[-5:], lr,
eps)
self.save_model(step=step)
print "[training completed] episodes: {}, Max reward: {}, Average reward: {}".format(
len(reward_history), np.max(reward_history),
np.mean(reward_history))
fig_path = os.path.join(self.model_path, 'figs')
makedirs(fig_path)
fig_file = os.path.join(
fig_path, '{n}-{t}.png'.format(n=self.name, t=int(time.time())))
plot_learning_curve(fig_file, {
'reward': reward_history,
'reward_avg': reward_averaged
},
xlabel='episode')
def work(self, sess, n_episodes=2000, plot_learning_curve=False):
try:
self.final_returns
except AttributeError:
self.reset_network(sess)
with tf.variable_scope(
self.name), sess.as_default(), sess.graph.as_default():
for episode in range(n_episodes):
last_state = self.env.reset()
# plot the learning curve
if plot_learning_curve:
if episode % self.plot_learning_curve_freq == 0:
utils.plot_learning_curve(
self.final_returns, self.plot_learning_curve_freq)
for i in range(1000):
self.env.render()
# get curreny epsilon
if self.learning_step_counter < self.n_exploration_steps:
epsilon = self.exploration_eps[
self.learning_step_counter]
else:
epsilon = self.epsilon_final
# choose an action according to epsilon-greedy policy
random_helper = np.random.rand()
if random_helper >= epsilon:
q_vals = sess.run(self.dqn.q_eval,
feed_dict={self.dqn.s: [last_state]})
action = np.argmax(q_vals)
else:
action = self.env.action_space.sample()
# get and store the transition
next_state, reward, done, info = self.env.step(action)
self.replay_memory.push(last_state, action, next_state,
reward, done)
states, actions, next_states, rewards, dones = self.replay_memory.sample(
self.minibatch_size)
sess.run(self.dqn.update_gradient_op,
feed_dict={
self.dqn.s: states,
self.dqn.s_next: next_states,
self.dqn.a: actions,
self.dqn.r: rewards,
self.dqn.done: dones
})
self.learning_step_counter += 1
if self.learning_step_counter % self.target_net_update_freq == 0:
sess.run(self.dqn.target_replace_op)
if done:
self.final_returns.append(i)
break
else:
last_state = next_state
n_games = 2000
env = gym.make('LunarLander-v2')
agent = ACAgent(input_dims=[8],
action_size=4,
lr=5e-6,
gamma=0.99,
fc1Dm=2048,
fc2Dm=1536)
fname = 'Actor_cretic_' + 'Lunar_Lander_'+ str(agent.fc1Dm)+ 'fc1_dims_' + \
str(agent.fc2Dm) + 'fc2Dm_lr'+ str(agent.lr)+ '_' + str(n_games) + 'games'
figure_file = 'plots/' + fname + '.png'
scores = []
for episode in range(n_games):
state = env.reset()
score = 0
done = False
while not done:
action = agent.choose_action(state)
new_state, reward, done, info = env.step(action)
agent.learn(state, reward, new_state, done)
score += reward
state = new_state
scores.append(score)
avg_score = np.mean(scores[-100:])
print('episode ', episode, 'score %.2f' % score,
'avg_score %.2f' % avg_score)
x = [i + 1 for i in range(len(scores))]
plot_learning_curve(scores, x, figure_file)
input_dims=[8],
n_actions=4,
fc1_dims=2048,
fc2_dims=1536)
n_games = 3000
fname = 'ACTOR_CRITIC_' + 'lunar_lander_' + str(agent.fc1_dims) + \
'_fc1_dims_' + str(agent.fc2_dims) + '_fc2_dims_lr' + str(agent.lr) +\
'_' + str(n_games) + 'games'
figure_file = 'plots/' + fname + '.png'
scores = []
for i in range(n_games):
done = False
observation = env.reset()
score = 0
while not done:
action = agent.choose_action(observation)
observation_, reward, done, info = env.step(action)
score += reward
agent.learn(observation, reward, observation_, done)
observation = observation_
scores.append(score)
avg_score = np.mean(scores[-100:])
print('episode ', i, 'score %.1f' % score,
'average score %.1f' % avg_score)
x = [i + 1 for i in range(n_games)]
plot_learning_curve(x, scores, figure_file)
setproctitle("(hwijeen) word drop")
logging.basicConfig(
format='%(asctime)s - %(name)s - %(levelname)s - %(message)s',
datefmt='%m/%d/%Y %H:%M:%S',
level=logging.INFO)
logger = logging.getLogger(__name__)
if __name__ == "__main__":
DATA_DIR = '/home/nlpgpu5/hwijeen/MulDocSumm/data/'
FILE = 'rottentomatoes_prepared'
DEVICE = torch.device('cuda:1')
EPOCH = 50
WORD_DROP = 0.2
data = MulSumData(DATA_DIR, FILE, 99, DEVICE)
selfattnCVAE = build_SelfAttnCVAE(len(data.vocab),
hidden_dim=600,
latent_dim=300,
enc_bidirectional=True,
word_drop=WORD_DROP,
device=DEVICE)
trainer = Trainer(selfattnCVAE,
data,
lr=0.001,
to_record=['recon_loss', 'kl_loss'])
results = trainer.train(num_epoch=EPOCH, verbose=True)
plot_learning_curve(results['train_losses'], results['valid_losses'])
plot_metrics(results['train_metrics'], results['valid_metrics'])
plot_kl_loss(trainer.stats.stats['kl_loss'])
'best score %.4f' % best_score,
'epsilon %.4f' % agent.epsilon, 'game steps', n_game_steps,
'steps', n_steps)
if avg_score > best_score:
if not args.load_checkpoint:
agent.save_models()
best_score = avg_score
else:
print(
'episode: ', i, 'score: ', score,
' average score ** best score ** epsilon %.4f' % agent.epsilon,
'game steps', n_game_steps, 'steps', n_steps)
eps_history.append(agent.epsilon)
# if args.load_checkpoint and n_steps >= 18000:
# break
if save_data:
print('saving data...')
save_data = False
x = [i + 1 for i in range(len(scores))]
plot_learning_curve(steps_array, scores, eps_history,
figure_file + '_step_' + str(n_steps) + '.png')
np.save(scores_file + '_step_' + str(n_steps) + '.npy',
np.array(scores))
x = [i + 1 for i in range(len(scores))]
plot_learning_curve(steps_array, scores, eps_history,
figure_file + '_step_final.png')
np.save(scores_file + '_step_final.npy', np.array(scores))
# utils.plot_learning_curve(best_svm, 'best svm accuracy score',
# tfidf_uni_bigram_train,
# train_cats, cv=5, n_jobs=-1, scorer=accuracy_scorer)
# utils.plot_learning_curve(best_svm, 'best svm hamming loss',
# tfidf_uni_bigram_train,
# train_cats, cv=5, n_jobs=-1, scorer=hamming_losser)
# utils.plot_learning_curve(best_svm, 'best svm jaccard score',
# tfidf_uni_bigram_train,
# train_cats, cv=5, n_jobs=-1, scorer=jaccard_scorer)
# utils.plot_learning_curve(best_svm, 'best svm matthews corr coef scorer', tfidf_uni_bigram_train,
# train_cats, cv=5, n_jobs=-1,
# scorer=matthews_corrcoef_scorer)
utils.plot_learning_curve(best_svm,
'best svm recall score',
tfidf_uni_bigram_train,
train_cats,
cv=5,
n_jobs=-1,
scorer=recall_scorer)
def evaluate():
train_uni_bigram, test_uni_bigram, train_cats, test_cats = \
feature_vecs.do_uni_bigram()
tfidf_uni_bigram_train = feature_vecs.tfidf_matrix(train_uni_bigram)
tfidf_uni_bigram_test = feature_vecs.tfidf_matrix(test_uni_bigram)
# tfidf_uni_bigram_train, tfidf_uni_bigram_test, train_cats, test_cats = feature_vecs.do_means_embeddings()
svm_classifier = LinearSVC(max_iter=5000, dual=False)
def main():
Hyper.init()
env = make_env(
Constants.env_id) # See wrapper code for environment in atari_image.py
Hyper.n_actions = env.action_space.n
shape = (env.observation_space.shape)
agent = Agent(input_dims=shape, env=env, n_actions=env.action_space.n)
filename = f"{Constants.env_id}_games{Hyper.n_games}_alpha{Hyper.alpha}.png"
figure_file = f'plots/{filename}'
best_ave_score = env.reward_range[0]
best_score = 0
score_history = []
load_checkpoint = False
if load_checkpoint:
agent.load_models()
env.render(mode='human')
total_steps = 0
game_id = 0
for i in range(Hyper.n_games):
game_id += 1
if game_id % 20 == 0:
Hyper.alpha = Hyper.alpha * 1.2
Hyper.beta = Hyper.beta * 1.2
observation = env.reset()
done = False
steps = 0
score = 0
while not done:
# Sample action from the policy
action = agent.choose_action(observation)
# Sample transition from the environment
new_observation, reward, done, info = env.step(action)
steps += 1
total_steps += 1
# Store transition in the replay buffer
agent.remember(observation, action, reward, new_observation, done)
if not load_checkpoint:
agent.learn()
score += reward
observation = new_observation
score_history.append(score)
avg_score = np.mean(score_history[-100:])
if score > best_score:
best_score = score
if avg_score > best_ave_score:
best_ave_score = avg_score
if not load_checkpoint:
agent.save_models()
episode = i + 1
print(
f"episode {episode}: score {score}, best_score {best_score}, best ave score {best_ave_score}, trailing 100 games avg {avg_score}, steps {steps}, total steps {total_steps}"
)
print(f"total number of steps taken: {total_steps}")
if not load_checkpoint:
x = [i + 1 for i in range(Hyper.n_games)]
plot_learning_curve(x, score_history, figure_file)
observation = env.reset()
while not done:
action = agent.choose_action(observation)
observation_, reward, done, info = env.step(action)
score += reward
if not load_checkpoint:
agent.store_transition(observation, action, reward,
observation_, int(done))
agent.learn()
observation = observation_
n_steps += 1
score.append(score)
steps_array.append(n_steps)
avg_score = np.mean(scores[-100:])
print(
f'episode {i} score: {score},'
f'average score {avg_score:.1f} best score {best_score:.1f} epsilon {agent.epsilon:.2f}'
f'steps {n_steps}')
if avg_score > best_score:
if not load_checkpoint:
agent.save_models()
best_score = avg_score
eps_history.append(agent.epsilon)
plot_learning_curve(steps_array, scores, eps_history, figure_file)
def train_model(model, optimizer, criterion, training_data_loader,
validation_data_loader, opt):
logging.info(
'====================== Checking GPU Availability ========================='
)
if torch.cuda.is_available():
if isinstance(opt.gpuid, int):
opt.gpuid = [opt.gpuid]
logging.info('Running on GPU! devices=%s' % str(opt.gpuid))
model = model.cuda()
model = nn.DataParallel(model, device_ids=opt.gpuid)
criterion.cuda()
else:
logging.info('Running on CPU!')
logging.info(
'====================== Start Training =========================')
train_history_losses = []
valid_history_losses = []
best_loss = sys.float_info.max
train_losses = []
total_batch = 0
early_stop_flag = False
for epoch in range(opt.start_epoch, opt.epochs):
if early_stop_flag:
break
progbar = Progbar(title='Training',
target=len(training_data_loader),
batch_size=opt.batch_size,
total_examples=len(training_data_loader.dataset))
model.train()
for batch_i, batch in enumerate(training_data_loader):
batch_i += 1 # for the aesthetics of printing
total_batch += 1
src = batch.src
trg = batch.trg
# print("src size - ",src.size())
# print("target size - ",trg.size())
if torch.cuda.is_available():
src.cuda()
trg.cuda()
optimizer.zero_grad()
decoder_logits, _, _ = model.forward(src,
trg,
must_teacher_forcing=False)
start_time = time.time()
# remove the 1st word in trg to let predictions and real goal match
loss = criterion(
decoder_logits.contiguous().view(-1, opt.vocab_size),
trg[:, 1:].contiguous().view(-1))
print("--loss calculation- %s seconds ---" %
(time.time() - start_time))
start_time = time.time()
loss.backward()
print("--backward- %s seconds ---" % (time.time() - start_time))
if opt.max_grad_norm > 0:
pre_norm = torch.nn.utils.clip_grad_norm(
model.parameters(), opt.max_grad_norm)
after_norm = (sum([
p.grad.data.norm(2)**2 for p in model.parameters()
if p.grad is not None
]))**(1.0 / 2)
logging.info('clip grad (%f -> %f)' % (pre_norm, after_norm))
optimizer.step()
train_losses.append(loss.data[0])
perplexity = np.math.exp(loss.data[0])
progbar.update(epoch, batch_i, [('train_loss', loss.data[0]),
('perplexity', perplexity)])
if batch_i > 1 and batch_i % opt.report_every == 0:
logging.info(
'====================== %d =========================' %
(batch_i))
logging.info(
'Epoch : %d Minibatch : %d, Loss=%.5f, PPL=%.5f' %
(epoch, batch_i, np.mean(loss.data[0]), perplexity))
sampled_size = 2
logging.info(
'Printing predictions on %d sampled examples by greedy search'
% sampled_size)
# softmax logits to get probabilities (batch_size, trg_len, vocab_size)
# decoder_probs = torch.nn.functional.softmax(decoder_logits.view(trg.size(0) * trg.size(1), -1)).view(*trg.size(), -1)
if torch.cuda.is_available():
src = src.data.cpu().numpy()
decoder_logits = decoder_logits.data.cpu().numpy()
max_words_pred = decoder_logits.argmax(axis=-1)
trg = trg.data.cpu().numpy()
else:
src = src.data.numpy()
decoder_logits = decoder_logits.data.numpy()
max_words_pred = decoder_logits.argmax(axis=-1)
trg = trg.data.numpy()
sampled_trg_idx = np.random.random_integers(low=0,
high=len(trg) - 1,
size=sampled_size)
src = src[sampled_trg_idx]
max_words_pred = [max_words_pred[i] for i in sampled_trg_idx]
decoder_logits = decoder_logits[sampled_trg_idx]
trg = [trg[i][1:] for i in sampled_trg_idx
] # the real target has removed the starting <BOS>
for i, (src_wi, pred_wi,
real_wi) in enumerate(zip(src, max_words_pred, trg)):
nll_prob = -np.sum(
np.log2([
decoder_logits[i][l][pred_wi[l]]
for l in range(len(real_wi))
]))
sentence_source = [opt.id2word[x] for x in src_wi]
sentence_pred = [opt.id2word[x] for x in pred_wi]
sentence_real = [opt.id2word[x] for x in real_wi]
logging.info(
'==================================================')
logging.info('Source: %s ' % (' '.join(sentence_source)))
logging.info('\t\tPred : %s (%.4f)' %
(' '.join(sentence_pred), nll_prob))
logging.info('\t\tReal : %s ' % (' '.join(sentence_real)))
if total_batch > 1 and total_batch % opt.run_valid_every == 0:
logging.info('*' * 50)
logging.info(
'Run validation test @Epoch=%d,#(Total batch)=%d' %
(epoch, total_batch))
valid_losses = _valid(validation_data_loader,
model,
criterion,
optimizer,
epoch,
opt,
is_train=False)
train_history_losses.append(copy.copy(train_losses))
valid_history_losses.append(valid_losses)
train_losses = []
# Plot the learning curve
plot_learning_curve(
train_history_losses,
valid_history_losses,
'Training and Validation',
curve1_name='Training Error',
curve2_name='Validation Error',
save_path=opt.exp_path +
'/[epoch=%d,batch=%d,total_batch=%d]train_valid_curve.png'
% (epoch, batch_i, total_batch))
'''
determine if early stop training
'''
valid_loss = np.average(valid_history_losses[-1])
is_best_loss = valid_loss < best_loss
rate_of_change = float(valid_loss -
best_loss) / float(best_loss)
# only store the checkpoints that make better validation performances
if total_batch > 1 and epoch >= opt.start_checkpoint_at and (
total_batch % opt.save_model_every == 0
or is_best_loss):
# Save the checkpoint
logging.info('Saving checkpoint to: %s' % os.path.join(
opt.save_path,
'%s.epoch=%d.batch=%d.total_batch=%d.error=%f' %
(opt.exp, epoch, batch_i, total_batch, valid_loss) +
'.model'))
torch.save(
model.state_dict(),
open(
os.path.join(
opt.save_path,
'%s.epoch=%d.batch=%d.total_batch=%d' %
(opt.exp, epoch, batch_i, total_batch) +
'.model'), 'wb'))
# valid error doesn't decrease
if rate_of_change >= 0:
stop_increasing += 1
else:
stop_increasing = 0
if is_best_loss:
logging.info(
'Validation: update best loss (%.4f --> %.4f), rate of change (ROC)=%.2f'
% (best_loss, valid_loss, rate_of_change * 100))
else:
logging.info(
'Validation: best loss is not updated for %d times (%.4f --> %.4f), rate of change (ROC)=%.2f'
% (stop_increasing, best_loss, valid_loss,
rate_of_change * 100))
best_loss = min(valid_loss, best_loss)
if stop_increasing >= opt.early_stop_tolerance:
logging.info(
'Have not increased for %d epoches, early stop training'
% stop_increasing)
early_stop_flag = True
break
logging.info('*' * 50)
def display_learning_curves(clf, X, y, title="Learning Curves"):
return plot_learning_curve(clf, title, X, y,
n_jobs=-1, train_sizes=np.linspace(0.1, 1.0, 5),
scoring=ndcg_scorer)
for min_samples in range(1,21):
for max_depth in range(1,21):
test_algo(DecisionTreeClassifier, X, Y, "Decision Tree with max_depth=%d and min_samples_leaf=%d" %
(max_depth, min_samples), {'max_depth': max_depth, 'min_samples_leaf': min_samples})
print
algo, options, name = best_classifier
print "Best overall: %s with %.5f" % (name, best_score)
# re-train best algo with whole training set
classifier = algo(**options)
classifier.fit(X, Y)
output_predictions(classifier, '04_submission.csv', formatting_functions, features)
plot_learning_curve(name, algo, options, X, Y, min_size=50, n_steps=50)
print '='*100
print
# Random forests
best_score = 0.0
best_classifier = ()
test_algo(RandomForestClassifier, X, Y, "Random Forest with 10 trees")
test_algo(RandomForestClassifier, X, Y, "Random Forest with 50 trees", {'n_estimators': 50})
test_algo(RandomForestClassifier, X, Y, "Random Forest with 100 trees", {'n_estimators': 100})
test_algo(RandomForestClassifier, X, Y, "Random Forest with 10 trees, max_depth=6 and min_samples_leaf=6",
{'max_depth': 6, 'min_samples_leaf': 6})
test_algo(RandomForestClassifier, X, Y, "Random Forest with 50 trees, max_depth=6 and min_samples_leaf=6",
def train_model(model, optimizer, criterion, training_data_loader, validation_data_loader, opt):
logging.info('====================== Checking GPU Availability =========================')
if torch.cuda.is_available():
if isinstance(opt.gpuid, int):
opt.gpuid = [opt.gpuid]
logging.info('Running on GPU! devices=%s' % str(opt.gpuid))
model = model.cuda()
model = nn.DataParallel(model, device_ids=opt.gpuid)
criterion.cuda()
else:
logging.info('Running on CPU!')
logging.info('====================== Start Training =========================')
train_history_losses = []
valid_history_losses = []
best_loss = sys.float_info.max
train_losses = []
total_batch = 0
early_stop_flag = False
for epoch in range(opt.start_epoch , opt.epochs):
if early_stop_flag:
break
progbar = Progbar(title='Training', target=len(training_data_loader), batch_size=opt.batch_size,
total_examples=len(training_data_loader.dataset))
model.train()
for batch_i, batch in enumerate(training_data_loader):
batch_i += 1 # for the aesthetics of printing
total_batch += 1
src = batch.src
trg = batch.trg
# print("src size - ",src.size())
# print("target size - ",trg.size())
if torch.cuda.is_available():
src.cuda()
trg.cuda()
optimizer.zero_grad()
decoder_logits, _, _ = model.forward(src, trg, must_teacher_forcing=False)
start_time = time.time()
# remove the 1st word in trg to let predictions and real goal match
loss = criterion(
decoder_logits.contiguous().view(-1, opt.vocab_size),
trg[:, 1:].contiguous().view(-1)
)
print("--loss calculation- %s seconds ---" % (time.time() - start_time))
start_time = time.time()
loss.backward()
print("--backward- %s seconds ---" % (time.time() - start_time))
if opt.max_grad_norm > 0:
pre_norm = torch.nn.utils.clip_grad_norm(model.parameters(), opt.max_grad_norm)
after_norm = (sum([p.grad.data.norm(2) ** 2 for p in model.parameters() if p.grad is not None])) ** (1.0 / 2)
logging.info('clip grad (%f -> %f)' % (pre_norm, after_norm))
optimizer.step()
train_losses.append(loss.data[0])
perplexity = np.math.exp(loss.data[0])
progbar.update(epoch, batch_i, [('train_loss', loss.data[0]), ('perplexity', perplexity)])
if batch_i > 1 and batch_i % opt.report_every == 0:
logging.info('====================== %d =========================' % (batch_i))
logging.info('Epoch : %d Minibatch : %d, Loss=%.5f, PPL=%.5f' % (epoch, batch_i, np.mean(loss.data[0]), perplexity))
sampled_size = 2
logging.info('Printing predictions on %d sampled examples by greedy search' % sampled_size)
# softmax logits to get probabilities (batch_size, trg_len, vocab_size)
# decoder_probs = torch.nn.functional.softmax(decoder_logits.view(trg.size(0) * trg.size(1), -1)).view(*trg.size(), -1)
if torch.cuda.is_available():
src = src.data.cpu().numpy()
decoder_logits = decoder_logits.data.cpu().numpy()
max_words_pred = decoder_logits.argmax(axis=-1)
trg = trg.data.cpu().numpy()
else:
src = src.data.numpy()
decoder_logits = decoder_logits.data.numpy()
max_words_pred = decoder_logits.argmax(axis=-1)
trg = trg.data.numpy()
sampled_trg_idx = np.random.random_integers(low=0, high=len(trg) - 1, size=sampled_size)
src = src[sampled_trg_idx]
max_words_pred = [max_words_pred[i] for i in sampled_trg_idx]
decoder_logits = decoder_logits[sampled_trg_idx]
trg = [trg[i][1:] for i in sampled_trg_idx] # the real target has removed the starting <BOS>
for i, (src_wi, pred_wi, real_wi) in enumerate(zip(src, max_words_pred, trg)):
nll_prob = -np.sum(np.log2([decoder_logits[i][l][pred_wi[l]] for l in range(len(real_wi))]))
sentence_source = [opt.id2word[x] for x in src_wi]
sentence_pred = [opt.id2word[x] for x in pred_wi]
sentence_real = [opt.id2word[x] for x in real_wi]
logging.info('==================================================')
logging.info('Source: %s ' % (' '.join(sentence_source)))
logging.info('\t\tPred : %s (%.4f)' % (' '.join(sentence_pred), nll_prob))
logging.info('\t\tReal : %s ' % (' '.join(sentence_real)))
if total_batch > 1 and total_batch % opt.run_valid_every == 0:
logging.info('*' * 50)
logging.info('Run validation test @Epoch=%d,#(Total batch)=%d' % (epoch, total_batch))
valid_losses = _valid(validation_data_loader, model, criterion, optimizer, epoch, opt, is_train=False)
train_history_losses.append(copy.copy(train_losses))
valid_history_losses.append(valid_losses)
train_losses = []
# Plot the learning curve
plot_learning_curve(train_history_losses, valid_history_losses, 'Training and Validation',
curve1_name='Training Error', curve2_name='Validation Error',
save_path=opt.exp_path + '/[epoch=%d,batch=%d,total_batch=%d]train_valid_curve.png' % (epoch, batch_i, total_batch))
'''
determine if early stop training
'''
valid_loss = np.average(valid_history_losses[-1])
is_best_loss = valid_loss < best_loss
rate_of_change = float(valid_loss - best_loss) / float(best_loss)
# only store the checkpoints that make better validation performances
if total_batch > 1 and epoch >= opt.start_checkpoint_at and (total_batch % opt.save_model_every == 0 or is_best_loss):
# Save the checkpoint
logging.info('Saving checkpoint to: %s' % os.path.join(opt.save_path, '%s.epoch=%d.batch=%d.total_batch=%d.error=%f' % (opt.exp, epoch, batch_i, total_batch, valid_loss) + '.model'))
torch.save(
model.state_dict(),
open(os.path.join(opt.save_path, '%s.epoch=%d.batch=%d.total_batch=%d' % (opt.exp, epoch, batch_i, total_batch) + '.model'), 'wb')
)
# valid error doesn't decrease
if rate_of_change >= 0:
stop_increasing += 1
else:
stop_increasing = 0
if is_best_loss:
logging.info('Validation: update best loss (%.4f --> %.4f), rate of change (ROC)=%.2f' % (
best_loss, valid_loss, rate_of_change * 100))
else:
logging.info('Validation: best loss is not updated for %d times (%.4f --> %.4f), rate of change (ROC)=%.2f' % (
stop_increasing, best_loss, valid_loss, rate_of_change * 100))
best_loss = min(valid_loss, best_loss)
if stop_increasing >= opt.early_stop_tolerance:
logging.info('Have not increased for %d epoches, early stop training' % stop_increasing)
early_stop_flag = True
break
logging.info('*' * 50)
plot_matrix(etc_3, X_test, y_test, filename) """Plot ROC Curve""" y_score = etc_3.predict_proba(X_test) y_test_bin = np.array(label_binarize(y_test, classes=np.unique(y))) n_classes = y_test_bin.shape[1] plot_roc_curve(n_classes, y_test_bin, y_score, filename) """Plot Decision Area""" clf = ExtraTreesClassifier(n_estimators=ESTIMATORS, max_features=0.42, n_jobs=-1) plot_decision_area(clf, X_scaled[:, 2:4], y, title="Extra Trees Classifier", filename=filename) """Plot Learning Curve""" X_lc = X_scaled[:10000] y_lc = y[:10000] plot_learning_curve(clf, "Extra Trees Classifier", X_lc, y_lc, filename=filename) """Plot Validation Curve: max_depth""" clf = ExtraTreesClassifier(n_estimators=ESTIMATORS, max_depth=8) param_name = "max_depth" param_range = [1, 2, 4, 8, 16, 32, 100] plot_validation_curve(clf, X_lc, y_lc, param_name, param_range, scoring="roc_auc", cv=n_classes, filename=filename) """Plot Validation Curve: n_estimators""" # clf = ExtraTreesClassifier(n_estimators=ESTIMATORS ,max_features=0.42, max_depth=16) # param_name = 'n_estimators' # param_range = [1, 2, 4, 10, 30] # plot_validation_curve(clf, X_scaled, y, # param_name, param_range, # scoring='accuracy', cv=n_classes, # filename)
