Python find_rv_variantkey_by_rsid Examples

Example #1

 def test_find_rv_variantkey_by_rsid_notfound(self):
     vk, first = bs.find_rv_variantkey_by_rsid(rvsrc, 0, 9, 0xfffffff0)
     self.assertEqual(vk, 0)
     self.assertEqual(first, 10)

Example #2

 def test_find_rv_variantkey_by_rsid(self):
     for item, _, _, _, rsid, vkey in testData:
         vk, first = bs.find_rv_variantkey_by_rsid(rvsrc, 0, 9, rsid)
         self.assertEqual(vk, vkey)
         self.assertEqual(first, item)

Example #3

File: test_rsidvar.py Project: madduri/variantkey

 def test_find_rv_variantkey_by_rsid_notfound(self):
     vk, first = bs.find_rv_variantkey_by_rsid(rvmc, 0, rvnrows, 0xfffffff0)
     self.assertEqual(vk, 0)
     self.assertEqual(first, 9)

Example #4

File: example.py Project: tecnickcom/variantkey

# /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\


# RSIDVAR
# -------

# Load the lookup table for rsID to VariantKey.
# The input binary file can be generated using the resources/tools/rsvk.sh script.
# This example uses the "c/test/data/rsvk.10.bin".
mf, mc, nrows = vk.mmap_rsvk_file('rsvk.10.bin', [])
if nrows <= 0:
    assert False, "Unable to open the rsvk.10.bin file"

vk.find_rv_variantkey_by_rsid(mc, 0, nrows, rsid=0X00000061)
# (9223656209074749440, 3)

vk.get_next_rv_variantkey_by_rsid(mc, 2, nrows, 0x00000061)
# (9223656209074749440, 3)

vk.munmap_binfile(mf)

# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

# Load the lookup table for rsID to VariantKey.
# The input binary file can be generated using the resources/tools/rsvk.sh script.
# This example uses the "c/test/data/rsvk.m.10.bin".
mf, mc, nrows = vk.mmap_rsvk_file('rsvk.m.10.bin', [])
if nrows <= 0:
    assert False, "Unable to open the rsvk.m.10.bin file"

Example #5

# /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\

# RSIDVAR
# -------

# Load the lookup table for rsID to VariantKey.
# The input binary file can be generated using the resources/tools/vkhexbin.sh script.
# This example uses the "c/test/data/rsvk.10.bin".
mfsrc, mffd, mfsize, mflast = vk.mmap_binfile('rsvk.10.bin')
if mffd < 0:
    assert False, "Unable to open the rsvk.10.bin file"

print(vk.get_rv_variantkey(mfsrc, item=3))
# 9223656209074749440

print(vk.find_rv_variantkey_by_rsid(mfsrc, 0, 9, rsid=0X00000061))
# (9223656209074749440, 3)

print(vk.get_next_rv_variantkey_by_rsid(mfsrc, 2, 9, 0x00000061))
# (9223656209074749440, 3)

vk.munmap_binfile(mfsrc, mffd, mfsize)

# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

# Load the lookup table for rsID to VariantKey.
# The input binary file can be generated using the resources/tools/vkhexbin.sh script.
# This example uses the "c/test/data/rsvk.m.10.bin".
mfsrc, mffd, mfsize, mflast = vk.mmap_binfile('rsvk.m.10.bin')
if mffd < 0:
    assert False, "Unable to open the rsvk.m.10.bin file"