Python AbstractVervetWorkflow.__init__ Examples

Example #1

File: PCAOnVCFWorkflow.py Project: mjmontague/vervet-web

    def __init__(self, **keywords):
        """
		2011-7-11
		"""
        AbstractVervetWorkflow.__init__(self, **keywords)
        self.inputDir = os.path.abspath(self.inputDir)
        self.smartpca_path = self.insertHomePath(self.smartpca_path, self.home_path)

Example #2

File: CalculateDistanceMatrixFromVCFPipe.py Project: mjmontague/vervet-web

	def __init__(self,  **keywords):
		"""
		2011-7-11
		"""
		AbstractVervetWorkflow.__init__(self, **keywords)
		
		self.inputDir = os.path.abspath(self.inputDir)

Example #3

File: ReadFileBaseCountWorkflow.py Project: mjmontague/vervet-web

    def __init__(self, **keywords):
        """
		2011-7-11
		"""
        AbstractVervetWorkflow.__init__(self, **keywords)

        if self.ind_seq_id_ls:
            self.ind_seq_id_ls = getListOutOfStr(self.ind_seq_id_ls, data_type=int)

Example #4

File: UnpackAndAddIndividualSequence2DB.py Project: mjmontague/vervet-web

	def __init__(self,  **keywords):
		"""
		2011-8-3
		"""
		AbstractVervetWorkflow.__init__(self, **keywords)
		self.addJobsDict = {1: self.addJobsToProcessWUSTLData,\
						2: self.addJobsToProcessMcGillData,\
						3: self.addJobsToProcessSouthAfricanRNAData,\
						4: self.addJobsToProcessSouthAfricanDNAData,\
						5: self.addJobsToProcessUNGCVervetData}