def make_highlighting_report_for_each_session(part='digital reading',
redo=False,
use_edit_dir=True):
# get the session names
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# avoid sessions where the corrections have not been completely calculated
if not os.path.isfile(sess.dir_name + os.sep +
'time_to_find_highlights.json'):
continue
# don't recalculate
if not redo and os.path.isfile(sess.dir_name + os.sep +
'time_to_make_highlight_report.json'):
continue
time_to_find_highlights = {}
t0 = time.time()
report = make_report(sess, part=part, use_edit_dir=use_edit_dir)
with open(sess.dir_name + os.sep + settings.highlighting_report,
'w') as fp:
json.dump(report, fp, indent=4, sort_keys=False)
time_to_find_highlights['make_report'] = time.time() - t0
with open(
sess.dir_name + os.sep + 'time_to_make_highlight_report.json',
'w') as fp:
json.dump(time_to_find_highlights, fp)
def find_highlights_for_each_session(no_bolding=False,
img_dir_path=settings.frame_images_dir,
part='digital reading',
dir_to_read_from=settings.global_id_dir,
dir_to_save_to=settings.highlights_dir,
recalculate=False):
# get the session names
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# avoid sessions where the corrections have not been completely calculated
if not os.path.isfile(sess.dir_name + os.sep +
'time_to_assign_ids.json'):
continue
# don't recalculate
if not recalculate and os.path.isfile(sess.dir_name + os.sep +
'time_to_find_highlights.json'):
continue
time_to_find_highlights = {}
t0 = time.time()
find_all_highlights(sess,
part=part,
no_bolding=no_bolding,
img_dir_path=img_dir_path,
dir_to_read_from=dir_to_read_from,
dir_to_save_to=dir_to_save_to,
recalculate=recalculate)
time_to_find_highlights['find_all_highlights'] = time.time() - t0
with open(sess.dir_name + os.sep + 'time_to_find_highlights.json',
'w') as fp:
json.dump(time_to_find_highlights, fp)
def assign_global_ids_to_each_session(redo=False,
part='digital reading',
error_dir=settings.error_dir):
# get the session names
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# avoid sessions where the corrections have not been completely calculated
if not os.path.isfile(sess.dir_name + os.sep +
'time_to_cleanup_ocr.json'):
continue
# don't recalculate
if not redo and os.path.isfile(sess.dir_name + os.sep +
'time_to_assign_ids.json'):
continue
time_to_assign_ids = {}
t0 = time.time()
assign_global_ids_from_correct_file(sess,
part=part,
redo=redo,
error_dir=error_dir)
time_to_assign_ids['assign_global_ids_from_correct_file'] = time.time(
) - t0
with open(sess.dir_name + os.sep + 'time_to_assign_ids.json',
'w') as fp:
json.dump(time_to_assign_ids, fp)
def run_initial_ocr_and_time_on_each_session(redo=False, cutoff_parts=True):
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
if not redo and os.path.isfile(sess.dir_name + os.sep +
'time_to_run_initial_ocr.json'):
continue
time_to_build = run_initial_ocr_and_time(sess,
cutoff_parts=cutoff_parts)
with open(sess.dir_name + os.sep + 'time_to_run_initial_ocr.json',
'w') as fp:
json.dump(time_to_build, fp)
def assign_global_ids_to_corrected_files_for_each_session():
# get the session names
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# assign the global ids
assign_global_ids_from_correct_file(
sess,
part='digital reading',
redo=True,
error_dir=settings.error_dir,
source_dir_name=settings.editor_dir,
alt_dir_name=settings.editor_dir,
start_from_scratch=True)
def make_highlighting_images(part='digital reading', redo=False):
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# avoid sessions where there is no highlighting report
if not os.path.isfile(sess.dir_name + os.sep +
settings.highlighting_report):
continue
# don't recalculate
if not redo and os.path.isfile(sess.dir_name + os.sep +
'time_to_make_highlight_image.json'):
continue
time_to_make_matrix = {}
t0 = time.time()
get_highlight_visualization_matrix(sess, part=part, redo=redo)
time_to_make_matrix['make_matrix'] = time.time() - t0
with open(sess.dir_name + os.sep + 'time_to_make_highlight_image.json',
'w') as fp:
json.dump(time_to_make_matrix, fp)
def get_reading_times():
all_sesion_names = get_session_names()
all_times = []
for sess_name in all_sesion_names:
sess = Session(sess_name)
reading_times = [x for x in sess.metadata if x['part'] == 'digital reading']
if len(reading_times) == 0:
start_time = None
end_time = None
else:
start_time = min([x['start_time'] for x in reading_times])
end_time = max([x['end_time'] for x in reading_times])
all_times.append([sess_name, start_time, end_time])
with open('reading_times.csv', 'w') as outfile:
writer = csv.writer(outfile)
writer.writerow(['sess_name', 'start_time', 'end_time'])
for row in all_times:
writer.writerow(row)
def run_cleanup_session_and_time_on_each_session(redo=False,
part='digital reading'):
# get the correct bag names
correct_bags = get_correct_bags()
word_to_doc = make_matching_dictionary(correct_bags)
# get the session names
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
if not redo and os.path.isfile(sess.dir_name + os.sep +
'time_to_cleanup_ocr.json'):
continue
time_to_cleanup = cleanup_session(sess,
correct_bags,
word_to_doc,
redo=redo,
stop_at_lines=False,
alt_dir_name=None,
part=part)
with open(sess.dir_name + os.sep + 'time_to_cleanup_ocr.json',
'w') as fp:
json.dump(time_to_cleanup, fp)
y_bottom - y_top,
facecolor='b',
alpha=1.0 / len(data))
plt.add_patch(rect)
# scale the plot to fit over the image
plt.xlim([0, width])
plt.ylim([height, 0])
# get rid of y ticks
plt.yticks([], [])
plt.xticks([], [])
plt.savefig(sess.dir_name + os.sep + 'dwell_heatmap.png', dpi=800)
if __name__ == '__main__':
for sess_name in get_session_names():
print(sess_name)
sess = Session(sess_name)
plot_scroll(sess,
xml_dir_extention=None,
start_time=None,
end_time=None,
reset_time=False,
filename='scrolling.png')
if not os.path.isdir(sess.dir_name + os.sep + 'hocr-files'):
print('no hocr')
continue
if not os.path.isdir(sess.dir_name + os.sep + 'xml-files'):
print('no xml')
continue
hocr_files = len(os.listdir(sess.dir_name + os.sep + 'hocr-files'))
def save_scrolling_for_all_sessions(part='digital reading'): for sess_name in get_session_names(): sess = Session(sess_name) calculate_scrolling(sess, part=part, redo=True)
for filename in os.listdir(dir_name):
if filename.startswith('.'):
continue
length_of_zeros = len(filename[:filename.find('.')])
break
# if there is nothing in the frames directory, exit
if length_of_zeros is None:
return
# set the matching string
frame_matching_string = dir_name + '%0' + str(length_of_zeros) + 'd.png'
command = [
'ffmpeg', '-r',
str(1 / settings.little_t), '-i', frame_matching_string, '-vcodec',
'mpeg4', '-y', sess.dir_name + os.sep + settings.explanation_video
]
# build the video
subprocess.call(command)
if __name__ == '__main__':
session_names = get_session_names()
# only make an explanation for the first session
# be aware this takes a VERY long time per video
for sess_name in session_names[:1]:
sess = Session(sess_name)
# make a visualization
make_explanation_frames_for_session(sess)
make_explanation_video(sess)
def make_highlighting_viz_for_all_sessions(part='digital reading'):
session_names = get_session_names()
for sess_name in session_names:
sess = Session(sess_name)
# make a visualization
make_highlight_viz(sess, part=part)
