def parse(self, data, clock):
if not data: # nothing received or nothing in the history -> nothing to parse
return None
if self.lenNames > len(data):
raise Exception("CSVParser: not enough data fields")
result = JOb()
sd = self.wrapper.getSensorDescription()
result.fields = sd.fields
# print data
for i in range(0, self.lenNames):
n = self.names[i]
if n in sd.fields:
result[n] = JOb()
result[n].propertyName = sd.field[n].propertyName
result[n].propertyURI = sd.field[n].propertyURI
if "unit" in sd.field[n]:
result[n].unit = sd.field[n].unit
result[n].observationSamplingTime = clock.timeAsString()
result[n].sensorID = sd.fullSensorID
if self.timestampcell >= 0:
result[n].observationResultTime = sd.parseTimestamp(data[self.timestampcell]).strftime(AbstractClock.format)
else:
result[n].observationResultTime = result[n].observationSamplingTime
if sd.field[n].dataType == "datetime.datetime":
result[n].value = dt.datetime.strptime(data[i], sd.field[n].format)
else:
result[n].value = str2Type(u(data[i]), sd.field[n].dataType)
return result
def parse(self, data, clock):
if not data: # nothing received or nothing in the history -> nothing to parse
return None
if isinstance(data, str) or isinstance(data, unicode):
data = JOb(u(data))
result = JOb()
sd = self.wrapper.getSensorDescription()
result.fields = sd.fields
for fieldname in sd.fields:
result[fieldname] = JOb()
result[fieldname].propertyName = sd.field[fieldname].propertyName
result[fieldname].propertyURI = sd.field[fieldname].propertyURI
if "unit" in sd.field[fieldname]:
result[fieldname].unit = sd.field[fieldname].unit
result[fieldname].sensorID = sd.fullSensorID
result[fieldname].observationSamplingTime = clock.timeAsString()
if self.timestampfield and self.timestampfield in data:
result[fieldname].observationResultTime = sd.parseTimestamp(data[self.timestampfield]).strftime(
AbstractClock.format
)
else:
result[fieldname].observationResultTime = result[fieldname].observationSamplingTime
if sd.field[fieldname].dataType == "datetime.datetime":
if sd.field[fieldname].format.startswith("UNIX"):
result[fieldname].value = sd.parseTimestamp(data[fieldname]) if fieldname in data else None
else:
result[fieldname].value = (
dt.datetime.strptime(data[fieldname], sd.field[fieldname].format) if fieldname in data else None
)
else:
result[fieldname].value = (
str2Type(u(data[fieldname]), sd.field[fieldname].dataType) if fieldname in data else None
)
return result
def get_observations(self, uuid, start=None, end=None, format='json', onlyLast=False, fields=None, offset=0):
from virtualisation.resourcemanagement.resourcemanagement import ResourceManagement
w = self.rm.getWrapperByUUID(uuid)
if not w:
return None
sd = w.getSensorDescription()
# prepare query
_filter = ["sensor_uuid = '%s'" % uuid]
order = "ORDER BY sampling_time"
limitation = ""
if onlyLast:
order += " DESC"
else:
if start:
_filter.append("sampling_time >= TIMESTAMP '%s'" % start)
if end:
_filter.append("sampling_time <= TIMESTAMP '%s'" % end)
_filter = "WHERE " + " and ".join(_filter)
if fields:
fields = fields.split(',')
fields_ = []
for ft in fields:
fields_.append("data->'%s' AS %s" % (ft, ft))
fields_.append("quality")
else:
fields_ = SQL.cp_observation_fields
limitation = "LIMIT %d" % (1 if onlyLast else self.PAGINATION_LIMIT)
query = "SELECT %s FROM %s.cp_observations %s %s %s OFFSET %d;" % (",".join(fields_), SQL.SCHEMA, _filter, order, limitation, offset)
# query = "SELECT %s FROM %s.cp_observations %s %s;" % (",".join(fields_), SQL.SCHEMA, _filter, order)
L.d("SQL: executing query", query)
try:
# need a new cursor object to no interfere with the state of the class's inserting cursor
cursor = self.conn.cursor()
cursor.execute(query)
data = cursor.fetchall()
data2 = [list(x) for x in data]
del data
if format in ('n3', 'nt', 'xml', 'turtle', 'pretty-xml', 'trix'):
if ResourceManagement.args.messagebus or ResourceManagement.args.triplestore:
if fields:
observations = []
qualities = []
for x in data2:
tmp = JOb()
for i in range(0, len(fields)):
ft = fields[i]
tmp[ft] = JOb(x[i])
tmp.fields = fields
observations.append(tmp)
qualities.append(JOb(x[-1]))
else:
observations = [JOb(x[3]) for x in data2]
qualities = [JOb(x[4]) for x in data2]
g = self.rm.annotator.annotateObservation(observations, sd, None, qualities)
del observations
del qualities
del query
return g.serialize(format=format)
else:
return "Error: requires messagebus or triplestore to be enabled"
else:
# search in all columns in each row for a datetime.datetime and parse it
for i in range(0, len(data2)):
data2[i] = map(lambda x: x.strftime("%Y-%m-%d %H:%M:%S") if isinstance(x, datetime.datetime) else x, data2[i])
json_list = []
for x in data2:
if fields:
# y = JOb({})
y = {}
for i in range(0, len(fields)):
# ft = fields[i]
# y[ft] = JOb(x[i])
y[fields[i]] = x[i]
# y.quality = JOb(x[-1])
# y.fields = fields
y["fields"] = fields
y["quality"] = x[-1]
else:
# y = JOb(x[3])
# y.quality = JOb(x[4])
y = x[3]
y["quality"] = x[4]
json_list.append(y)
del query
del data2
# return JOb(json_list).dumps()
return json_list
except Exception as e:
L.e("SQL:", e)
L.e("SQL query used:", query)
return "Error: " + str(e)
def update(self):
from virtualisation.resourcemanagement.resourcemanagement import ResourceManagement
# print "time", self.clock.now()
latStart = datetime.now()
L.d("processing:", self.getSensorDescription().sensorID)
# L.d(self.clock.now())
if self.replaymode:
self.stats.startMeasurement("Update_replay")
# self.clock.pause()
if self.historyreader:
L.d2("abstractwrapper get data")
self.stats.startMeasurement("Update_replay.Historyreader")
data_raw = self.historyreader.tick(self.clock)
self.stats.stopMeasurement("Update_replay.Historyreader")
L.d2("abstractwrapper received data:", str(data_raw))
if data_raw:
data_list = [data_raw] if not self.historyreader.multiple_observations else data_raw
for data in data_list:
try:
L.d2("abstractwrapper parse data")
# print "data to parse", data
self.stats.startMeasurement("Update_replay.Historyparser")
parsed = self.historyparser.parse(data, self.clock)
self.stats.stopMeasurement("Update_replay.Historyparser")
L.d2("abstractwrapper parsed data:", str(parsed))
del data
if parsed:
self.stats.startMeasurement("Update_replay.Preparation")
ObservationIDGenerator.addObservationIDToFields(parsed)
parsed.producedInReplayMode = True
parsed.recovered = False
parsed.latency = (datetime.now() - latStart).total_seconds()
self.stats.stopMeasurement("Update_replay.Preparation")
# QoI Start
quality = None
if self.qoiSystem:
L.d2("abstractwrapper get quality")
self.stats.startMeasurement("Update_replay.Quality")
quality = self.qoiSystem.addData(self.getSensorDescription(), parsed, self.clock)
self.stats.stopMeasurement("Update_replay.Quality")
L.d2("abstractwrapper quality:", quality)
if self.faultRecoveryActive:
L.d2("abstractwrapper update fault recovery")
self.stats.startMeasurement("Update_replay.FaultRecoveryUpdate")
self.updateFaultRecoveries(parsed, quality)
self.stats.stopMeasurement("Update_replay.FaultRecoveryUpdate")
L.d2("abstractwrapper fault recovery updated")
self.stats.startMeasurement("Update_replay.Receiver")
for r in self.receiver:
L.d2("abstractwrapper start receiver", r)
r.receive(parsed, self.getSensorDescription(), self.clock, quality)
L.d2("abstractwrapper receiver", r, "finished")
self.stats.stopMeasurement("Update_replay.Receiver")
except Exception as e:
L.e("Error while updating sensor", self.getSensorDescription().fullSensorID, e)
finally:
if ResourceManagement.args.gentle:
self.clock.sleep()
else:
L.d("there is no data, ask fault recovery1")
# L.i(self.getSensorDescription().sensorID)
# L.i(self.clock.now())
try:
self.stats.startMeasurement("Update_replay.Recovery")
data = JSONObject()
data.latency = 0
data.producedInReplayMode = True
data.recovered = True
data.fields = []
for n in self.getSensorDescription().fields:
if n in self.faultRecoveries and self.faultRecoveries[n].isReady():
data.fields.append(n)
data[n] = JSONObject()
# at this point the dataType is in FAULT_RECOVERY_SUPPORTED_DATATYPES and we can safely use cast
data[n].value = self.faultRecoveryCast(
self.faultRecoveries[n].getEstimation(),
self.getSensorDescription().field[n].dataType,
)
data[n].propertyName = self.getSensorDescription().field[n].propertyName
data[n].propertyURI = self.getSensorDescription().field[n].propertyURI
if "unit" in self.getSensorDescription().field[n]:
data[n].unit = self.getSensorDescription().field[n].unit
data[n].sensorID = self.getSensorDescription().fullSensorID
data[n].observationSamplingTime = self.clock.timeAsString()
data[n].observationResultTime = data[n].observationSamplingTime
self.stats.stopMeasurement("Update_replay.Recovery")
self.stats.startMeasurement("Update_replay.ObservationIDGenerator")
ObservationIDGenerator.addObservationIDToFields(data)
self.stats.stopMeasurement("Update_replay.ObservationIDGenerator")
quality = None
if self.qoiSystem:
self.stats.startMeasurement("Update_replay.Quality")
quality = self.qoiSystem.addData(self.getSensorDescription(), data, self.clock)
self.stats.stopMeasurement("Update_replay.Quality")
self.stats.startMeasurement("Update_replay.Receiver")
for r in self.receiver:
r.receive(data, self.getSensorDescription(), self.clock, quality)
self.stats.stopMeasurement("Update_replay.Receiver")
except Exception as e:
L.e("Error while updating sensor", self.getSensorDescription().fullSensorID, e)
finally:
pass
# if ResourceManagement.args.gentle:
# self.clock.sleep()
else:
pass # no history reader - nothing to do
self.stats.stopMeasurement("Update_replay")
else: # no replay mode
self.stats.startMeasurement("Update_live")
if self.connection:
try:
self.stats.startMeasurement("Update_live.Connection")
data_raw = self.connection.next()
self.stats.stopMeasurement("Update_live.Connection")
if data_raw:
data_list = [data_raw] if not self.connection.multiple_observations else data_raw
for data in data_list:
self.stats.startMeasurement("Update_live.Parser")
parsed = self.parser.parse(data, self.clock)
self.stats.stopMeasurement("Update_live.Parser")
if parsed:
self.stats.startMeasurement("Update_live.Preparation")
ObservationIDGenerator.addObservationIDToFields(parsed)
parsed.producedInReplayMode = False
parsed.recovered = False
parsed.latency = (datetime.now() - latStart).total_seconds()
self.stats.stopMeasurement("Update_live.Preparation")
# QoI Start
quality = None
if self.qoiSystem:
# TODO update the timestamp
self.stats.startMeasurement("Update_live.Quality")
quality = self.qoiSystem.addData(self.getSensorDescription(), parsed, self.clock)
self.stats.stopMeasurement("Update_live.Quality")
if self.faultRecoveryActive:
L.d2("abstractwrapper update fault recovery")
self.stats.startMeasurement("Update_live.FaultRecoveryUpdate")
self.updateFaultRecoveries(parsed, quality)
self.stats.stopMeasurement("Update_live.FaultRecoveryUpdate")
L.d2("abstractwrapper fault recovery updated")
self.stats.startMeasurement("Update_live.Receiver")
for r in self.receiver:
r.receive(parsed, self.getSensorDescription(), self.clock, quality)
self.stats.stopMeasurement("Update_live.Receiver")
else:
# fault recovery
L.i("there is no data, ask fault recovery2")
try:
self.stats.startMeasurement("Update_live.Recovery")
data = JSONObject()
data.latency = 0
data.recovered = True
data.fields = []
for n in self.getSensorDescription().fields:
if n in self.faultRecoveries and self.faultRecoveries[n].isReady():
data.fields.append(n)
data[n] = JSONObject()
data[n].value = self.faultRecoveryCast(
self.faultRecoveries[n].getEstimation(),
self.getSensorDescription().field[n].dataType,
)
data[n].propertyName = self.getSensorDescription().field[n].propertyName
data[n].propertyURI = self.getSensorDescription().field[n].propertyURI
if "unit" in self.getSensorDescription().field[n]:
data[n].unit = self.getSensorDescription().field[n].unit
data[n].sensorID = self.getSensorDescription().fullSensorID
data[n].observationSamplingTime = self.clock.timeAsString()
data[n].observationResultTime = data[n].observationSamplingTime
self.stats.stopMeasurement("Update_live.Recovery")
ObservationIDGenerator.addObservationIDToFields(data)
quality = None
if self.qoiSystem:
self.stats.startMeasurement("Update_live.Quality")
quality = self.qoiSystem.addData(self.getSensorDescription(), data, self.clock)
self.stats.stopMeasurement("Update_live.Quality")
self.stats.startMeasurement("Update_live.Receiver")
for r in self.receiver:
r.receive(data, self.getSensorDescription(), self.clock, quality)
self.stats.stopMeasurement("Update_live.Receiver")
except Exception as e:
L.e(
"Error while updating sensor (fault recovery)",
self.getSensorDescription().fullSensorID,
str(e),
)
finally:
pass
# if ResourceManagement.args.gentle:
# self.clock.sleep()
except Exception as e:
L.e(
"Error while updating sensor (not fault recovery)",
self.getSensorDescription().fullSensorID,
str(e),
)
else:
pass # no live mode supported
self.stats.stopMeasurement("Update_live")
